ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl04b10 |
|---|---|
| Clone Library Name | barley_pub |
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 85.5 bits (210), Expect = 6e-17 Identities = 37/46 (80%), Positives = 43/46 (93%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 331 RQNRTPTIV+VW+VLLASIFSLLWVR+DPFT+R+ GP+I CGINC Sbjct: 1020 RQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 79.0 bits (193), Expect = 6e-15 Identities = 33/46 (71%), Positives = 39/46 (84%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 331 RQNRTPTIV++W+VLLASIFSLLWVR+DPF + GP+ CGINC Sbjct: 981 RQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 73.9 bits (180), Expect = 2e-13 Identities = 29/46 (63%), Positives = 40/46 (86%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 331 RQNRTPTIV++W++LLASIFSL+WVR+DPF + GP ++ CG++C Sbjct: 1004 RQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 63.2 bits (152), Expect = 3e-10 Identities = 25/46 (54%), Positives = 38/46 (82%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 331 +Q++ PTI++VW++LLASI +LLWVRV+PF + GP ++ CG+NC Sbjct: 1038 KQDKMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPVLEICGLNC 1082
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 62.4 bits (150), Expect = 6e-10 Identities = 25/46 (54%), Positives = 38/46 (82%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 331 +Q+R PTI++VW++LLASI +LLWVRV+PF + GP ++ CG++C Sbjct: 1039 KQDRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1083
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 62.0 bits (149), Expect = 7e-10 Identities = 25/46 (54%), Positives = 38/46 (82%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 331 +Q+R PTI++VW++LLASI +LLWVRV+PF + GP ++ CG++C Sbjct: 1024 KQDRMPTIILVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1068
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 62.0 bits (149), Expect = 7e-10 Identities = 25/46 (54%), Positives = 39/46 (84%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 331 +Q+R PTI++VW++LLASI +LLWVRV+PF ++ GP ++ CG++C Sbjct: 1042 KQDRVPTIILVWSILLASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 61.6 bits (148), Expect = 9e-10 Identities = 30/38 (78%), Positives = 33/38 (86%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPN 355 RQNRTPTIVIVW+VLLASIFSLLWVR++PF A PN Sbjct: 1035 RQNRTPTIVIVWSVLLASIFSLLWVRINPFVD--ANPN 1070
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 59.3 bits (142), Expect = 5e-09 Identities = 26/32 (81%), Positives = 30/32 (93%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTT 373 RQNRTPTIVIVW+ LLASIFSLLWVR++PF + Sbjct: 1022 RQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 58.9 bits (141), Expect = 6e-09 Identities = 25/46 (54%), Positives = 37/46 (80%) Frame = -2 Query: 468 RQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 331 RQNRTPTIVI+W++LLAS+FSL+WVR++PF ++ + + +NC Sbjct: 938 RQNRTPTIVILWSILLASVFSLVWVRINPFVSK---TDTTSLSLNC 980
>RS7_PYRAE (Q8ZYK5) 30S ribosomal protein S7P| Length = 223 Score = 33.1 bits (74), Expect = 0.36 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Frame = +1 Query: 127 RFLCSKKRA*PHENGRWSITSIYKCVFAILTTFSNVVIR-----NSKHKFSLAPRVVSRS 291 R++C K PH GR+ T K I+ N+++R KHK A +V R+ Sbjct: 59 RYICLKPVILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHK---AYNIVKRA 115 Query: 292 --LLYFLSLQSPIFLAVDA 342 L+Y+ + ++P+ + +DA Sbjct: 116 FDLIYYKTGKNPLQVFIDA 134
>NOLA2_BOVIN (Q5E950) H/ACA ribonucleoprotein complex subunit 2 (Nucleolar| protein family A member 2) Length = 153 Score = 32.3 bits (72), Expect = 0.62 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Frame = -3 Query: 404 CCGFVLIHSLHVSLAQISKPVAS--TARKMGDCRDRKYNSDRLTTRGARENLCLELRITT 231 CCG H L V+L I++P+AS RK+ C +K + RG +E ++ I Sbjct: 18 CCGERTYHELLVNLNPIAQPLASRRLTRKLYKC-IKKAVKQKQIRRGVKE---VQKFINK 73 Query: 230 FEK-VVKIAKTHL*IDVIDHLPFS*G*ALFLEQRNL 126 EK ++ +A L I+V HLP + E RNL Sbjct: 74 GEKGIMVLAGDTLPIEVYCHLP------VMCEDRNL 103
>RS5_CICAR (O65731) 40S ribosomal protein S5 (Fragment)| Length = 197 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Frame = +1 Query: 157 PHENGRWSITSIYKCVFAILTTFSNVVIRNSKH--KFSLAPRVVSRS--LLYFLSLQSPI 324 PH GR+S+ K I+ +N ++ + ++ K +A R++ + +++ L+ Q+PI Sbjct: 43 PHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPI 102 Query: 325 FLAVDA 342 + VDA Sbjct: 103 QVIVDA 108
>PUF3_YEAST (Q07807) Protein PUF3| Length = 879 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +1 Query: 211 ILTTFSNVVIRNSKHKFSLAPRVVSRSLLYFLSLQSPIFLA 333 I+ T +N V+ SKHKF A VV +S+LY Q + ++ Sbjct: 757 IIETVANNVVEYSKHKF--ASNVVEKSILYGSKNQKDLIIS 795
>RS5B_ARATH (P51427) 40S ribosomal protein S5-2| Length = 207 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Frame = +1 Query: 157 PHENGRWSITSIYKCVFAILTTFSNVVIRNSKH--KFSLAPRVVSRS--LLYFLSLQSPI 324 PH GR+S+ K I+ +N ++ + ++ K +A R+V + +++ LS +PI Sbjct: 53 PHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPI 112 Query: 325 FLAVDA 342 + +DA Sbjct: 113 QVIIDA 118
>RS5A_ARATH (Q9ZUT9) 40S ribosomal protein S5-1| Length = 207 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Frame = +1 Query: 157 PHENGRWSITSIYKCVFAILTTFSNVVIRNSKH--KFSLAPRVVSRS--LLYFLSLQSPI 324 PH GR+S+ K I+ +N ++ + ++ K +A R+V + +++ LS +PI Sbjct: 53 PHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPI 112 Query: 325 FLAVDA 342 + +DA Sbjct: 113 QVIIDA 118
>RPOB_PLAFA (P21421) DNA-directed RNA polymerase beta chain (EC 2.7.7.6)| Length = 1024 Score = 28.5 bits (62), Expect = 8.9 Identities = 25/102 (24%), Positives = 46/102 (45%) Frame = +1 Query: 31 IIYINNKYKNS*VHSYDTKCLIGKFL*VYNPMRFLCSKKRA*PHENGRWSITSIYKCVFA 210 ++Y+NN Y N + + +I K + +YN ++F+ SK N +I S+ K Sbjct: 177 LLYLNNIYINKNISLFIYNNIINKKILIYNYIKFIYSK------YNNINNIISL-KLFII 229 Query: 211 ILTTFSNVVIRNSKHKFSLAPRVVSRSLLYFLSLQSPIFLAV 336 L F+N+ I FS+ S Y ++ + F ++ Sbjct: 230 KLNKFNNIYINLLNILFSIKLNFSYYSDFYINNIYNKKFYSI 271
>SYTL1_MOUSE (Q99N80) Synaptotagmin-like protein 1 (Exophilin-7)| Length = 567 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +1 Query: 214 LTTFSNVVIRNSKHKFSLAPRVVSRSLLYFLSLQSPIFLAVDATGLDIWASETCSEWI 387 L N +R+S + L RV+S S+ + SL IFL LD W ++ + W+ Sbjct: 331 LNPIFNETLRHSVQQADLPGRVLSLSVWHRESLGRNIFLGEVEVPLDTWNWDSEATWL 388 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,575,762 Number of Sequences: 219361 Number of extensions: 1403633 Number of successful extensions: 2813 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2812 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
