ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl04b07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184232.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 106 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 165 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975 Query: 166 cccgccaacctccatcgtcacgc 188 ||| || ||||||| | |||||| Sbjct: 2974 ccctcccacctccaccatcacgc 2952
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 106 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 165 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 1701639 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 1701580 Query: 166 cccgccaacctccatcgtcacgc 188 ||| || ||||||| | |||||| Sbjct: 1701579 ccctcccacctccaccatcacgc 1701557 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cacgcccctcttctcgccct 203 |||||||||||||||||||| Sbjct: 35501711 cacgcccctcttctcgccct 35501692 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 cggcggtggcgtcgtcgtccgcgc 299 ||||||||||||| |||||||||| Sbjct: 33219143 cggcggtggcgtcctcgtccgcgc 33219120
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 106 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 165 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 43982 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 43923 Query: 166 cccgccaacctccatcgtcacgc 188 ||| || ||||||| | |||||| Sbjct: 43922 ccctcccacctccaccatcacgc 43900
>dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B18, full insert sequence Length = 3486 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 106 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 165 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 3035 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2976 Query: 166 cccgccaacctccatcgtcacgc 188 ||| || ||||||| | |||||| Sbjct: 2975 ccctcccacctccaccatcacgc 2953
>dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full insert sequence Length = 3193 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 106 ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 165 |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975 Query: 166 cccgccaacctccatcgtcacgc 188 ||| || ||||||| | |||||| Sbjct: 2974 ccctcccacctccaccatcacgc 2952
>gb|AY106982.1| Zea mays PCO102337 mRNA sequence Length = 641 Score = 93.7 bits (47), Expect = 4e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 105 cctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactcca 164 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 207 cctatgcttcgatccgcatgttccatgtcatggtgaagctcttcccgagcggcaatgcca 266 Query: 165 gcccgcc 171 ||||||| Sbjct: 267 gcccgcc 273 Score = 63.9 bits (32), Expect = 4e-07 Identities = 103/127 (81%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 254 aagtaggggctcgacgtggcgacggcggtggcgtcgtcgtccgcgccgtccgcccggatg 313 ||||| ||||||||||| |||||||| |||||||| || ||||||| || ||||| Sbjct: 350 aagtaagggctcgacgtcgcgacggcagtggcgtc------cgtgccgtccacctggatg 403 Query: 314 gcgaggtccctgccggcgccgtgcagccccagcaccgtgatcctctcgatgacgagcccc 373 || |||||| |||||| || | ||| |||||||||| || | |||||| ||| |||||| Sbjct: 404 gcaaggtccttgccggtaccctccagacccagcaccgagagcttctcgacgaccagcccc 463 Query: 374 ttgtgca 380 ||||||| Sbjct: 464 ttgtgca 470
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 313 ggcgaggtccctgccggcgccgtgc 337 ||||||||||| ||||||||||||| Sbjct: 2095834 ggcgaggtcccggccggcgccgtgc 2095810
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 ggcgtcgtcgtccgcgccgtccgcc 307 ||||||||||||| ||||||||||| Sbjct: 240430 ggcgtcgtcgtccccgccgtccgcc 240454
>emb|AL672114.1|MLO672114 Mesorhizobium loti R7A symbiosis island; segment 3/4 Length = 149050 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 cgtcgtccgcgccgtccgccc 308 ||||||||||||||||||||| Sbjct: 138281 cgtcgtccgcgccgtccgccc 138261
>gb|AF311738.1|AF311738 Mesorhizobium loti NifA (nifA) gene, complete cds; nicotinic acid mononucleotide biosynthetic operon and biotin biosynthetic operon; complete sequence; PanD (panD) gene, complete cds; and unknown genes Length = 13200 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 cgtcgtccgcgccgtccgccc 308 ||||||||||||||||||||| Sbjct: 3080 cgtcgtccgcgccgtccgccc 3060
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.4 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 271 ggcgacggcggtggcg-tcgtcgtccgcgccgtccgc 306 ||||||| |||||||| |||| ||||||||||||||| Sbjct: 6491244 ggcgacgccggtggcgatcgtggtccgcgccgtccgc 6491208 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 cgtcgtccgcgccgtccgccc 308 ||||||||||||||||||||| Sbjct: 4709303 cgtcgtccgcgccgtccgccc 4709323
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 278 gcggtggcgtcgtcgtccgcg 298 ||||||||||||||||||||| Sbjct: 982452 gcggtggcgtcgtcgtccgcg 982432 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 ggcgtcgtcgtccgcgccgtccgc 306 |||||||||| ||||||||||||| Sbjct: 2994137 ggcgtcgtcggccgcgccgtccgc 2994160
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 291 cgtccgcgccgtccgcccggatggcgagg 319 |||||||||||||||||||| ||||||| Sbjct: 686917 cgtccgcgccgtccgcccggcaggcgagg 686945
>gb|AY926321.1| Aponogeton hexatepalus voucher Sainty 434337 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence Length = 470 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 262 gctcgacgtggcgacggcggtggcgtcgtcgtccgcg 298 ||||| || |||| |||||| |||||||||||||||| Sbjct: 409 gctcgccggggcggcggcggcggcgtcgtcgtccgcg 373
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tttaagctctataaatttaa 29 |||||||||||||||||||| Sbjct: 798940 tttaagctctataaatttaa 798959
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 ggcgacggcggtggcgtcgtcgtc 294 |||| ||||||||||||||||||| Sbjct: 79591 ggcggcggcggtggcgtcgtcgtc 79614
>ref|XM_467863.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3047 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 cgtcgtccgcgccgtccgcc 307 |||||||||||||||||||| Sbjct: 384 cgtcgtccgcgccgtccgcc 403
>ref|NM_190436.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1635 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cacgcccctcttctcgccct 203 |||||||||||||||||||| Sbjct: 24 cacgcccctcttctcgccct 43
>ref|XM_472360.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 ggcgacggcggtggcgtcgtcgtc 294 |||| ||||||||||||||||||| Sbjct: 392 ggcggcggcggtggcgtcgtcgtc 369
>ref|XM_368616.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00628.4) partial mRNA Length = 1062 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 gcgtcgtcgtccgcgccgtccgcc 307 |||||||||||| ||||||||||| Sbjct: 704 gcgtcgtcgtcctcgccgtccgcc 681
>gb|AY623084.1| Crocus sativus unknown mRNA Length = 532 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 atggtgaagctcttccccag 153 |||||||||||||||||||| Sbjct: 359 atggtgaagctcttccccag 378
>ref|XM_001000967.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha) (LOC639686), mRNA Length = 5817 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ttccatgtcatggtgaagct 144 |||||||||||||||||||| Sbjct: 3549 ttccatgtcatggtgaagct 3530
>ref|XM_001002743.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha) (LOC677358), mRNA Length = 5820 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ttccatgtcatggtgaagct 144 |||||||||||||||||||| Sbjct: 3549 ttccatgtcatggtgaagct 3530
>ref|XM_992311.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle alpha isoform (MyHC-alpha) (LOC667772), mRNA Length = 5820 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ttccatgtcatggtgaagct 144 |||||||||||||||||||| Sbjct: 3549 ttccatgtcatggtgaagct 3530
>gb|AY289593.1| Mycobacterium ulcerans FabH-like protein and type I polyketide synthase loading module genes, partial cds Length = 6747 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 268 cgtggcgacggcggtggcgtcgtcgtcc 295 |||||||| ||||| ||||||||||||| Sbjct: 4831 cgtggcgaaggcggcggcgtcgtcgtcc 4858
>gb|AY394445.2| Mycobacterium ulcerans clone 92 mycolactone polyketide synthase (mlpks) gene, partial cds Length = 442 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 268 cgtggcgacggcggtggcgtcgtcgtcc 295 |||||||| ||||| ||||||||||||| Sbjct: 32 cgtggcgaaggcggcggcgtcgtcgtcc 59
>gb|AY394446.2| Mycobacterium ulcerans clone 94 mycolactone polyketide synthase (mlpks) pseudogene, partial sequence Length = 1704 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 268 cgtggcgacggcggtggcgtcgtcgtcc 295 |||||||| ||||| ||||||||||||| Sbjct: 1139 cgtggcgaaggcggcggcgtcgtcgtcc 1166
>gb|AY394441.2| Mycobacterium ulcerans clone 85 mycolactone polyketide synthase (mlpks) pseudogene, partial sequence Length = 1781 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 268 cgtggcgacggcggtggcgtcgtcgtcc 295 |||||||| ||||| ||||||||||||| Sbjct: 588 cgtggcgaaggcggcggcgtcgtcgtcc 561
>gb|AC122233.4| Mus musculus BAC clone RP23-137D14 from 16, complete sequence Length = 203964 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ttccatgtcatggtgaagct 144 |||||||||||||||||||| Sbjct: 52009 ttccatgtcatggtgaagct 52028
>gb|AC112521.4| Mus musculus BAC clone RP23-186C6 from 9, complete sequence Length = 230334 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 cagccccagcaccgtgatcctctc 360 |||||||||||| ||||||||||| Sbjct: 185177 cagccccagcacagtgatcctctc 185200
>gb|AC166563.2| Spironucleus vortens clone JGIBAWF-9G17, complete sequence Length = 40267 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 236 tgcgcgtccgcggccaagaagtag 259 |||||||||||||||| ||||||| Sbjct: 19060 tgcgcgtccgcggccaggaagtag 19037
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome Length = 1485148 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 actttttaagctctataaat 25 |||||||||||||||||||| Sbjct: 1103611 actttttaagctctataaat 1103630
>emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on chromosome 10 Contains part of the gene for VPS10 domain receptor protein SORCS 1, complete sequence Length = 158724 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 catgcagacggaagcagagg 86 |||||||||||||||||||| Sbjct: 93875 catgcagacggaagcagagg 93894
>emb|Y10438.1|SPFKBAD Streptomyces sp. MA6548 fkbA gene and partial fkbD gene encoding FK506 polyketide synthase and cytochrome P-450-9-deoxo-FK506 hydroxylase, respectively Length = 19791 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 gcgtcgtcgtccgcgccgtc 303 |||||||||||||||||||| Sbjct: 19172 gcgtcgtcgtccgcgccgtc 19153
>emb|BX649209.1| Mycobacterium ulcerans plasmid pMUM001, complete plasmid genome Length = 174155 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 268 cgtggcgacggcggtggcgtcgtcgtcc 295 |||||||| ||||| ||||||||||||| Sbjct: 136524 cgtggcgaaggcggcggcgtcgtcgtcc 136497 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 268 cgtggcgacggcggtggcgtcgtcgtcc 295 |||||||| ||||| ||||||||||||| Sbjct: 71699 cgtggcgaaggcggcggcgtcgtcgtcc 71672
>emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23, complete sequence Length = 133759 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 ggcgacggcggtggcgtcgtcgtc 294 |||| ||||||||||||||||||| Sbjct: 124203 ggcggcggcggtggcgtcgtcgtc 124226
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 3/6 Length = 317511 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tttaagctctataaatttaa 29 |||||||||||||||||||| Sbjct: 97835 tttaagctctataaatttaa 97854
>gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, complete sequence Length = 165311 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 atgcagacggaagcagaggc 87 |||||||||||||||||||| Sbjct: 90987 atgcagacggaagcagaggc 90968
>gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, complete sequence Length = 202956 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 aagcagaggcaaatgcagct 97 |||||||||||||||||||| Sbjct: 99826 aagcagaggcaaatgcagct 99807
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 ggcgacggcggtggcgtcgtcgtc 294 |||| ||||||||||||||||||| Sbjct: 19835741 ggcggcggcggtggcgtcgtcgtc 19835764
>gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 750 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ttttaagctctataaattta 28 |||||||||||||||||||| Sbjct: 645 ttttaagctctataaattta 664
>gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 750 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ttttaagctctataaattta 28 |||||||||||||||||||| Sbjct: 645 ttttaagctctataaattta 664
>gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 750 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ttttaagctctataaattta 28 |||||||||||||||||||| Sbjct: 645 ttttaagctctataaattta 664
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cgtcgtccgcgccgtccgcc 307 |||||||||||||||||||| Sbjct: 31794512 cgtcgtccgcgccgtccgcc 31794493
>gb|AF315118.1|AF315118 Populus euphratica clone PSR1 salt-induced mRNA sequence Length = 1079 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 atggtgaagctcttccccag 153 |||||||||||||||||||| Sbjct: 207 atggtgaagctcttccccag 188
>gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, complete sequence Length = 181663 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 agctctataaatttaaatta 33 |||||||||||||||||||| Sbjct: 175855 agctctataaatttaaatta 175836
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 gcggtggcgtcgtcgtccgcgccg 301 |||||||| ||||||||||||||| Sbjct: 2573996 gcggtggcctcgtcgtccgcgccg 2573973
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cacgcccctcttctcgccct 203 |||||||||||||||||||| Sbjct: 31898 cacgcccctcttctcgccct 31879
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cacgcccctcttctcgccct 203 |||||||||||||||||||| Sbjct: 125660 cacgcccctcttctcgccct 125641
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 tggcgacggcggtggcgtcg 289 |||||||||||||||||||| Sbjct: 2735170 tggcgacggcggtggcgtcg 2735151
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1070A12 Length = 148449 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 cggcggtggcgtcgtcgtccgcgc 299 ||||||||||||| |||||||||| Sbjct: 12390 cggcggtggcgtcctcgtccgcgc 12367
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cgtcgtccgcgccgtccgcc 307 |||||||||||||||||||| Sbjct: 90310 cgtcgtccgcgccgtccgcc 90291
>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22 Length = 82035 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tactttttaagctctataaa 24 |||||||||||||||||||| Sbjct: 24387 tactttttaagctctataaa 24368
>dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full insert sequence Length = 1978 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cacgcccctcttctcgccct 203 |||||||||||||||||||| Sbjct: 70 cacgcccctcttctcgccct 89
>ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 (ENSANGG00000003543), partial mRNA Length = 3441 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gacgacgacgagtcgaacga 58 |||||||||||||||||||| Sbjct: 1237 gacgacgacgagtcgaacga 1256
>dbj|AK110580.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E08, full insert sequence Length = 1232 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 ggcgacggcggtggcgtcgtcgtc 294 |||| ||||||||||||||||||| Sbjct: 439 ggcggcggcggtggcgtcgtcgtc 416
>dbj|AK070699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056I20, full insert sequence Length = 3047 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 cgtcgtccgcgccgtccgcc 307 |||||||||||||||||||| Sbjct: 384 cgtcgtccgcgccgtccgcc 403
>gb|J04639.1|TTHTAQP1A Thermus aquaticus DNA polymerase (PolI) gene Length = 2626 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 atggtgaagctcttccccag 153 |||||||||||||||||||| Sbjct: 2413 atggtgaagctcttccccag 2432
>dbj|D32013.1|TTHDNAP Thermus aquaticus gene for DNA polymerase, complete cds Length = 3026 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 atggtgaagctcttccccag 153 |||||||||||||||||||| Sbjct: 2293 atggtgaagctcttccccag 2312 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,279,452 Number of Sequences: 3902068 Number of extensions: 3279452 Number of successful extensions: 80717 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 79645 Number of HSP's gapped (non-prelim): 1073 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
