>gb|AY029259.1| Hordeum vulgare alpha-L-arabinofuranosidase/beta-D-xylosidase
            isoenzyme ARA-I mRNA, complete cds
          Length = 2647

 Score =  618 bits (312), Expect = e-174
 Identities = 334/340 (98%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                        
Query: 82   tttacagttgcaaatcgtccctccaattccaaacgaataaaatcaaatttaacaaccgca 141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2634 tttacagttgcaaatcgtccctccaattccaaacgaataaaatcaaatttaacaaccgca 2575

                                                                        
Query: 142  acaaaacaactcccaaagcctcccgtggatccaattctttcttgtcccaacataaaggcc 201
            |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 2574 acaaaacaactcccaaagcctcccgtggatccaattctttcttgtcccaacg-aaaggcc 2516

                                                                        
Query: 202  catttggttatttcacctcccttaaatcaattcctacggcccattaccccggtcggccca 261
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2515 catttggttatttcacctcccttaaatcgattcctacggcccattaccccggtcggccca 2456

                                                                        
Query: 262  tccaattccatcttctttttcccctatcaaatgaaatcgatcctccctacgtggaatttt 321
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2455 tccaattccatcttctttttcccctatcaaatgaaatcgattctccctacgtggaatttt 2396

                                                                        
Query: 322  tctgatcaccgtcgatcatcagactcgcagttccacggtgtgcttgaggtcgccgacgtg 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2395 tctgatcaccgtcgatcatcagactcgcagttccacggtgtgcttgaggtcgccgtcatg 2336

                                                    
Query: 382  cagcgtgtggccgccgagcgccaccttgcggccgcccagc 421
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 cagcgtgtggccgccgagcgccaccttgcggccgcccagc 2296

>ref|XM_474061.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2298

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                              
Query: 359  gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccacctt 408
            |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 2279 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccacctt 2230

>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
              complete sequence
          Length = 153643

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                                
Query: 359    gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccacctt 408
              |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 142131 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccacctt 142180



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 83     ttacagttgcaaatcgtccctccaa 107
              |||||||||||||||| ||||||||
Sbjct: 141858 ttacagttgcaaatcgaccctccaa 141882

>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
             complete sequence
          Length = 126659

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                               
Query: 359   gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccacctt 408
             |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 18418 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccacctt 18467



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 83    ttacagttgcaaatcgtccctccaa 107
             |||||||||||||||| ||||||||
Sbjct: 18145 ttacagttgcaaatcgaccctccaa 18169

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                                  
Query: 359      gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccacctt 408
                |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 32623397 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccacctt 32623446



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 83       ttacagttgcaaatcgtccctccaa 107
                |||||||||||||||| ||||||||
Sbjct: 32623124 ttacagttgcaaatcgaccctccaa 32623148

>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full
            insert sequence
          Length = 2821

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                              
Query: 359  gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccacctt 408
            |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 2448 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccacctt 2399



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 83   ttacagttgcaaatcgtccctccaa 107
            |||||||||||||||| ||||||||
Sbjct: 2721 ttacagttgcaaatcgaccctccaa 2697

>dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J07, full
            insert sequence
          Length = 1746

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                              
Query: 359  gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccacctt 408
            |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1409 gtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccacctt 1360



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 83   ttacagttgcaaatcgtccctccaa 107
            |||||||||||||||| ||||||||
Sbjct: 1682 ttacagttgcaaatcgaccctccaa 1658

>gb|AY112378.1| Zea mays CL47610_1 mRNA sequence
          Length = 676

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 359 gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccacctt 408
           |||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct: 391 gtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccacctt 440



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 163 cccgtggatccaattctttc 182
           ||||||||||||||||||||
Sbjct: 216 cccgtggatccaattctttc 235

>emb|AL691468.12| Mouse DNA sequence from clone RP23-20K13 on chromosome 4 Contains the 3'
              end of a novel gene (4933412J03Rik), a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              the Tnfsf15 gene for tumor necrosis factor (ligand)
              superfamily member 15 and the 3' end of the Tnfsf8 for
              tumor necrosis factor (ligand) superfamily member 8,
              complete sequence
          Length = 212420

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 273    cttctttttcccctatcaaatg 294
              ||||||||||||||||||||||
Sbjct: 201544 cttctttttcccctatcaaatg 201565

>gb|AC112494.2| Homo sapiens X BAC RP11-1L9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155681

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 259    ccatccaattccatcttcttt 279
              |||||||||||||||||||||
Sbjct: 119520 ccatccaattccatcttcttt 119500

>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete
             sequence
          Length = 147810

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 117   aataaaatcaaatttaacaac 137
             |||||||||||||||||||||
Sbjct: 56521 aataaaatcaaatttaacaac 56541

>gb|AC108734.10| Homo sapiens 3 BAC RP11-259P15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125990

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 123    atcaaatttaacaaccgcaacaaaa 147
              ||||||||||||||| |||||||||
Sbjct: 102960 atcaaatttaacaacagcaacaaaa 102984

>emb|BX247870.5| Zebrafish DNA sequence from clone RP71-24B12 in linkage group 14,
             complete sequence
          Length = 148854

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   aaacaactcccaaagcctccc 165
             |||||||||||||||||||||
Sbjct: 80405 aaacaactcccaaagcctccc 80385

>gb|U33007.1|SCD9461 Saccharomyces cerevisiae chromosome IV lambda 3641 and cosmids 9461,
             9831, and 9410
          Length = 78500

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 269   ccatcttctttttcccctatc 289
             |||||||||||||||||||||
Sbjct: 42258 ccatcttctttttcccctatc 42278

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 397     gagcgccaccttgcggccgc 416
               ||||||||||||||||||||
Sbjct: 2452084 gagcgccaccttgcggccgc 2452103

>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 267     ttccatcttctttttcccctatca 290
               ||||||||| ||||||||||||||
Sbjct: 1304518 ttccatcttttttttcccctatca 1304495

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 369     ggtcgccgacgtgcagcgtg 388
               ||||||||||||||||||||
Sbjct: 3418248 ggtcgccgacgtgcagcgtg 3418229

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    ggtcgccgacgtgcagcgtg 388
              ||||||||||||||||||||
Sbjct: 455930 ggtcgccgacgtgcagcgtg 455911

>gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, complete sequence
          Length = 129417

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aaaacaactcccaaagcctc 163
             ||||||||||||||||||||
Sbjct: 50042 aaaacaactcccaaagcctc 50061

>gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complete sequence
          Length = 148915

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aaaacaactcccaaagcctc 163
             ||||||||||||||||||||
Sbjct: 67838 aaaacaactcccaaagcctc 67857

>emb|CR382284.13| Zebrafish DNA sequence from clone DKEY-95H16 in linkage group 8,
             complete sequence
          Length = 205882

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   aattctttcttgtcccaacataaa 197
             |||||||| |||||||||||||||
Sbjct: 88320 aattctttgttgtcccaacataaa 88297

>ref|XM_570495.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND04750) partial mRNA
          Length = 816

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 267 ttccatcttctttttcccctatca 290
           ||||||||| ||||||||||||||
Sbjct: 102 ttccatcttttttttcccctatca 125

>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  agcgccaccttgcggccgcc 417
            ||||||||||||||||||||
Sbjct: 2214 agcgccaccttgcggccgcc 2195

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    ggtcgccgacgtgcagcgtg 388
              ||||||||||||||||||||
Sbjct: 265786 ggtcgccgacgtgcagcgtg 265767

>gb|AC010108.6| Drosophila melanogaster 3L BAC RP98-23K9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167187

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    tctttcttgtcccaacataa 196
              ||||||||||||||||||||
Sbjct: 132320 tctttcttgtcccaacataa 132301

>gb|AC010565.6| Drosophila melanogaster 3L BAC RP98-19A3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 159928

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tctttcttgtcccaacataa 196
             ||||||||||||||||||||
Sbjct: 20061 tctttcttgtcccaacataa 20042

>gb|AE012383.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 291
            of 460 of the complete genome
          Length = 10211

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 352  ttccacggtgtgcttgaggtcgcc 375
            ||||||||||||| ||||||||||
Sbjct: 1186 ttccacggtgtgcgtgaggtcgcc 1163

>emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 in linkage group 5,
            complete sequence
          Length = 157382

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  caaacgaataaaatcaaatt 130
            ||||||||||||||||||||
Sbjct: 3795 caaacgaataaaatcaaatt 3814

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 398     agcgccaccttgcggccgcc 417
               ||||||||||||||||||||
Sbjct: 4119100 agcgccaccttgcggccgcc 4119081

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 352     ttccacggtgtgcttgaggtcgcc 375
               ||||||||||||| ||||||||||
Sbjct: 1704419 ttccacggtgtgcgtgaggtcgcc 1704442

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 117     aataaaatcaaatttaacaa 136
               ||||||||||||||||||||
Sbjct: 2271224 aataaaatcaaatttaacaa 2271243

>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0535G04
          Length = 154180

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    aataaaatcaaatttaacaa 136
              ||||||||||||||||||||
Sbjct: 130681 aataaaatcaaatttaacaa 130700

>emb|AL954168.6| Zebrafish DNA sequence from clone DKEY-3I24 in linkage group 17,
             complete sequence
          Length = 205011

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 103   tccaattccaaacgaataaaatcaaatt 130
             ||||||||||||| ||||||||||||||
Sbjct: 40013 tccaattccaaac-aataaaatcaaatt 39987

>gb|AE003545.3| Drosophila melanogaster chromosome 3L, section 40 of 83 of the complete
              sequence
          Length = 282115

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    tctttcttgtcccaacataa 196
              ||||||||||||||||||||
Sbjct: 190919 tctttcttgtcccaacataa 190900


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,118,602
Number of Sequences: 3902068
Number of extensions: 4118602
Number of successful extensions: 80997
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80676
Number of HSP's gapped (non-prelim): 323
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)