ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_469231.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
2dbj|AK061599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
3emb|CT025842.2| Medicago truncatula chromosome 5 clone mth2-54i2... 44 0.40
4gb|AC105966.11| Mus musculus chromosome 3, clone RP23-403H2, com... 42 1.6
5ref|XM_517444.1| PREDICTED: Pan troglodytes similar to transcrip... 42 1.6
6gb|AY112670.1| Homo sapiens transcriptional coactivator tubedown... 42 1.6
7ref|XM_874724.1| PREDICTED: Bos taurus similar to NMDA receptor ... 42 1.6
8ref|XM_874639.1| PREDICTED: Bos taurus similar to NMDA receptor ... 42 1.6
9ref|XM_874549.1| PREDICTED: Bos taurus similar to NMDA receptor ... 42 1.6
10ref|XM_616817.2| PREDICTED: Bos taurus similar to NMDA receptor ... 42 1.6
11ref|XM_864850.1| PREDICTED: Bos taurus similar to NMDA receptor ... 42 1.6
12ref|NM_057175.3| Homo sapiens NMDA receptor regulated 1 (NARG1),... 42 1.6
13ref|XM_540937.2| PREDICTED: Canis familiaris similar to NMDA rec... 42 1.6
14gb|AF510858.1| Mus musculus N-terminal aceyltransferase 1 mRNA, ... 42 1.6
15gb|BC030167.1| Mus musculus NMDA receptor-regulated gene 1, mRNA... 42 1.6
16gb|AY039242.1| Homo sapiens gastric cancer antigen Ga19 mRNA, co... 42 1.6
17ref|NM_053089.2| Mus musculus NMDA receptor-regulated gene 1 (Na... 42 1.6
18emb|CR861248.1| Pongo pygmaeus mRNA; cDNA DKFZp459P063 (from clo... 42 1.6
19dbj|AK163846.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 1.6
20gb|BC050017.1| Mus musculus NMDA receptor-regulated gene 1, mRNA... 42 1.6
21gb|AF327722.1|AF327722 Homo sapiens putative acetyltransferase m... 42 1.6
22dbj|AB221683.1| Mus musculus cDNA pooled tissues:(tissue_type=br... 42 1.6
23gb|AC097376.3| Homo sapiens BAC clone RP11-83A24 from 4, complet... 42 1.6
24gb|BC093928.1| Homo sapiens NMDA receptor regulated 1, mRNA (cDN... 42 1.6
25gb|AC108057.3| Homo sapiens BAC clone RP11-374N13 from 2, comple... 42 1.6
26emb|AJ314788.1|HSA314788 Homo sapiens mRNA for putative N-acetyl... 42 1.6
27gb|BC104806.1| Homo sapiens NMDA receptor regulated 1, mRNA (cDN... 42 1.6
28gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, co... 42 1.6
29gb|AC125688.6| Rattus norvegicus 20 BAC CH230-186I2 (Children's ... 40 6.2
30gb|AC116856.8| Mus musculus chromosome 14, clone RP24-403P16, co... 40 6.2
31gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
32gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.2
33gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
34emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 ... 40 6.2
35emb|AL589649.4| Human DNA sequence from clone RP11-264J13 on chr... 40 6.2
36emb|CR376765.12| Zebrafish DNA sequence from clone DKEY-208L2 in... 40 6.2
37emb|CR932968.2| Medicago truncatula chromosome 5 clone mth2-8e17... 40 6.2
38gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.2
39emb|BX649403.4| Zebrafish DNA sequence from clone CH211-153M11 i... 40 6.2
40gb|AC008814.6| Homo sapiens chromosome 5 clone CTD-2117L12, comp... 40 6.2
41gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Can... 40 6.2
42gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genom... 40 6.2
43dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
44dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
46gb|AC116172.2| Homo sapiens BAC clone RP11-24L21 from 4, complet... 40 6.2
47gb|AC008176.3|AC008176 Homo sapiens BAC clone RP11-451F11 from 7... 40 6.2
48gb|AF237622.1|AF237622 Mus musculus acetyltransferase Tubedown-1... 40 6.2
49emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, c... 40 6.2
50dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
51gb|AC090673.5| Homo sapiens 12 BAC RP11-366L20 (Roswell Park Can... 40 6.2
52emb|CT009602.4| PTB-121B21, complete sequence 40 6.2
53gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
54gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complet... 40 6.2
55gb|AC138720.5| Mus musculus BAC clone RP23-192O12 from chromosom... 40 6.2
56emb|AL391155.3|CNS06C81 Human chromosome 14 DNA sequence BAC R-5... 40 6.2
57gb|AF326972.1| Homo sapiens high-mobility group protein isoform ... 40 6.2

>ref|XM_469231.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2316

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 299  cctgctggagcgtcggaccggggtcatcacctcatcatcatccttgttctttttcttggc 358
            ||||||||| || ||||| |||||  ||||| | ||||||||||||||  | ||||||||
Sbjct: 2283 cctgctggaacgccggactggggtggtcaccgcctcatcatccttgtttctcttcttggc 2224

                        
Query: 359  agcgatcttctc 370
            || |||||||||
Sbjct: 2223 agggatcttctc 2212



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>dbj|AK061599.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A09, full
            insert sequence
          Length = 2801

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 299  cctgctggagcgtcggaccggggtcatcacctcatcatcatccttgttctttttcttggc 358
            ||||||||| || ||||| |||||  ||||| | ||||||||||||||  | ||||||||
Sbjct: 2453 cctgctggaacgccggactggggtggtcaccgcctcatcatccttgtttctcttcttggc 2394

                        
Query: 359  agcgatcttctc 370
            || |||||||||
Sbjct: 2393 agggatcttctc 2382



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>emb|CT025842.2| Medicago truncatula chromosome 5 clone mth2-54i22, COMPLETE SEQUENCE
          Length = 111922

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 84    agtttcaaaagcaatctcaaac 105
             ||||||||||||||||||||||
Sbjct: 18698 agtttcaaaagcaatctcaaac 18677



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>gb|AC105966.11| Mus musculus chromosome 3, clone RP23-403H2, complete sequence
          Length = 201376

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 330    tcatcatcatccttgttctttttct 354
              |||||||||||||| ||||||||||
Sbjct: 197607 tcatcatcatcctttttctttttct 197583



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>ref|XM_517444.1| PREDICTED: Pan troglodytes similar to transcriptional coactivator
           tubedown-100 isoform 1; putative N-acetyltransferase;
           gastric cancer antigen Ga19 (LOC461495), mRNA
          Length = 552

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 tcatcatcatccttgttctttttct 354
           |||||||||||||| ||||||||||
Sbjct: 145 tcatcatcatccttcttctttttct 121



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>gb|AY112670.1| Homo sapiens transcriptional coactivator tubedown-100 (TBDN100) mRNA,
            complete cds
          Length = 2601

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 1895 tcatcatcatccttcttctttttct 1871



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>ref|XM_874724.1| PREDICTED: Bos taurus similar to NMDA receptor regulated 1,
            transcript variant 5 (LOC536676), mRNA
          Length = 5687

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2204 tcatcatcatccttcttctttttct 2180



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>ref|XM_874639.1| PREDICTED: Bos taurus similar to NMDA receptor regulated 1,
            transcript variant 4 (LOC536676), mRNA
          Length = 5648

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2219 tcatcatcatccttcttctttttct 2195



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>ref|XM_874549.1| PREDICTED: Bos taurus similar to NMDA receptor regulated 1,
            transcript variant 3 (LOC536676), mRNA
          Length = 5642

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2213 tcatcatcatccttcttctttttct 2189



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>ref|XM_616817.2| PREDICTED: Bos taurus similar to NMDA receptor regulated 1,
            transcript variant 1 (LOC536676), mRNA
          Length = 5638

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2204 tcatcatcatccttcttctttttct 2180



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>ref|XM_864850.1| PREDICTED: Bos taurus similar to NMDA receptor regulated 1,
            transcript variant 2 (LOC536676), mRNA
          Length = 6241

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2204 tcatcatcatccttcttctttttct 2180



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>ref|NM_057175.3| Homo sapiens NMDA receptor regulated 1 (NARG1), mRNA
          Length = 5554

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2151 tcatcatcatccttcttctttttct 2127



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>ref|XM_540937.2| PREDICTED: Canis familiaris similar to NMDA receptor regulated 1
            (LOC483817), mRNA
          Length = 5449

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2030 tcatcatcatcctttttctttttct 2006



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>gb|AF510858.1| Mus musculus N-terminal aceyltransferase 1 mRNA, complete cds
          Length = 4056

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2092 tcatcatcatcctttttctttttct 2068



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>gb|BC030167.1| Mus musculus NMDA receptor-regulated gene 1, mRNA (cDNA clone
           IMAGE:3674167), complete cds
          Length = 2372

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 tcatcatcatccttgttctttttct 354
           |||||||||||||| ||||||||||
Sbjct: 410 tcatcatcatcctttttctttttct 386



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>gb|AY039242.1| Homo sapiens gastric cancer antigen Ga19 mRNA, complete cds
          Length = 3084

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2176 tcatcatcatccttcttctttttct 2152



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>ref|NM_053089.2| Mus musculus NMDA receptor-regulated gene 1 (Narg1), mRNA
          Length = 4056

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2092 tcatcatcatcctttttctttttct 2068



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>emb|CR861248.1| Pongo pygmaeus mRNA; cDNA DKFZp459P063 (from clone DKFZp459P063)
          Length = 4127

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2163 tcatcatcatccttcttctttttct 2139



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>dbj|AK163846.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130079A18 product:unclassifiable, full
           insert sequence
          Length = 2319

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 tcatcatcatccttgttctttttct 354
           |||||||||||||| ||||||||||
Sbjct: 486 tcatcatcatcctttttctttttct 462



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>gb|BC050017.1| Mus musculus NMDA receptor-regulated gene 1, mRNA (cDNA clone
            MGC:60847 IMAGE:30020858), complete cds
          Length = 4060

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2093 tcatcatcatcctttttctttttct 2069



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>gb|AF327722.1|AF327722 Homo sapiens putative acetyltransferase mRNA, complete cds
          Length = 4192

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2174 tcatcatcatccttcttctttttct 2150



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>dbj|AB221683.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
            days
            neonate,strain=BALB/c),(tissue_type=testis,
            dev_stage=adult, strain=C57BL/6J), clone:V01Y048K13
          Length = 2598

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 1895 tcatcatcatcctttttctttttct 1871



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>gb|AC097376.3| Homo sapiens BAC clone RP11-83A24 from 4, complete sequence
          Length = 145395

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 330   tcatcatcatccttgttctttttct 354
             |||||||||||||| ||||||||||
Sbjct: 76435 tcatcatcatccttcttctttttct 76411



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>gb|BC093928.1| Homo sapiens NMDA receptor regulated 1, mRNA (cDNA clone MGC:120963
            IMAGE:7939773), complete cds
          Length = 2739

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 1960 tcatcatcatccttcttctttttct 1936



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>gb|AC108057.3| Homo sapiens BAC clone RP11-374N13 from 2, complete sequence
          Length = 127242

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 177    acatgtctgtctgtctaacaa 197
              |||||||||||||||||||||
Sbjct: 117803 acatgtctgtctgtctaacaa 117783



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>emb|AJ314788.1|HSA314788 Homo sapiens mRNA for putative N-acetyltransferase
          Length = 5505

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 2103 tcatcatcatccttcttctttttct 2079



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>gb|BC104806.1| Homo sapiens NMDA receptor regulated 1, mRNA (cDNA clone MGC:132466
            IMAGE:8143809), complete cds
          Length = 2739

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 330  tcatcatcatccttgttctttttct 354
            |||||||||||||| ||||||||||
Sbjct: 1960 tcatcatcatccttcttctttttct 1936



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>gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, complete sequence
          Length = 202315

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 tcatcatcatccttgttctttttct 354
           |||||||||||||| ||||||||||
Sbjct: 788 tcatcatcatcctttttctttttct 764



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>gb|AC125688.6| Rattus norvegicus 20 BAC CH230-186I2 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 209618

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   tcaaacatgtctgtctgtct 192
             ||||||||||||||||||||
Sbjct: 66923 tcaaacatgtctgtctgtct 66904



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>gb|AC116856.8| Mus musculus chromosome 14, clone RP24-403P16, complete sequence
          Length = 196560

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 163   tattttatcatcaaacatgtctgtctgt 190
             |||||| ||||||||| |||||||||||
Sbjct: 39934 tattttctcatcaaacttgtctgtctgt 39907



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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 165   ttttatcatcaaacatgtctgtctgtct 192
             |||||||||  |||||||||||||||||
Sbjct: 38337 ttttatcattcaacatgtctgtctgtct 38310



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 299      cctgctggagcgtcggaccggggtcatcacctcatcatcatccttgtt 346
                ||||||||| || ||||| |||||  ||||| | ||||||||||||||
Sbjct: 26240356 cctgctggaacgccggactggggtggtcaccgcctcatcatccttgtt 26240403



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       ctcaaaccacaaaaacaaat 118
                ||||||||||||||||||||
Sbjct: 11142817 ctcaaaccacaaaaacaaat 11142836



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>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078f20,
              complete sequence
          Length = 151042

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 165    ttttatcatcaaacatgtctgtctgtct 192
              |||||||||  |||||||||||||||||
Sbjct: 138162 ttttatcattcaacatgtctgtctgtct 138135



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>emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 in linkage group 16,
             complete sequence
          Length = 179375

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   aaaccacaaaaacaaatcct 121
             ||||||||||||||||||||
Sbjct: 73607 aaaccacaaaaacaaatcct 73626



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>emb|AL589649.4| Human DNA sequence from clone RP11-264J13 on chromosome 6, complete
             sequence
          Length = 44768

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   atatgtagaacataacagcagaaa 158
             |||||| |||||||||||||||||
Sbjct: 40501 atatgtggaacataacagcagaaa 40478



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>emb|CR376765.12| Zebrafish DNA sequence from clone DKEY-208L2 in linkage group 13,
             complete sequence
          Length = 134448

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    tctcaatcagagaacaatacaagg 60
             |||||||||||| |||||||||||
Sbjct: 24466 tctcaatcagagcacaatacaagg 24489



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>emb|CR932968.2| Medicago truncatula chromosome 5 clone mth2-8e17, COMPLETE SEQUENCE
          Length = 128179

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   gtcatcacctcatcatcatc 340
             ||||||||||||||||||||
Sbjct: 53861 gtcatcacctcatcatcatc 53880



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>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ctcaaaccacaaaaacaaat 118
             ||||||||||||||||||||
Sbjct: 56174 ctcaaaccacaaaaacaaat 56193



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>emb|BX649403.4| Zebrafish DNA sequence from clone CH211-153M11 in linkage group 13,
              complete sequence
          Length = 170097

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     tcaaaagcaatctcaaacca 107
              ||||||||||||||||||||
Sbjct: 132286 tcaaaagcaatctcaaacca 132267



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>gb|AC008814.6| Homo sapiens chromosome 5 clone CTD-2117L12, complete sequence
          Length = 146671

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   tcatcatccttgttcttttt 352
             ||||||||||||||||||||
Sbjct: 89306 tcatcatccttgttcttttt 89325



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>gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181835

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    gtcatcacctcatcatcatc 340
              ||||||||||||||||||||
Sbjct: 163349 gtcatcacctcatcatcatc 163368



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>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete
             sequence
          Length = 122939

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 299   cctgctggagcgtcggaccggggtcatcacctcatcatcatccttgtt 346
             ||||||||| || ||||| |||||  ||||| | ||||||||||||||
Sbjct: 69815 cctgctggaacgccggactggggtggtcaccgcctcatcatccttgtt 69862



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 165      ttttatcatcaaacatgtctgtctgtct 192
                |||||||||  |||||||||||||||||
Sbjct: 16397727 ttttatcattcaacatgtctgtctgtct 16397700



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 332      atcatcatccttgttctttttctt 355
                ||||||||||||||||||| ||||
Sbjct: 26148388 atcatcatccttgttctttctctt 26148411



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 299      cctgctggagcgtcggaccggggtcatcacctcatcatcatccttgtt 346
                ||||||||| || ||||| |||||  ||||| | ||||||||||||||
Sbjct: 26331665 cctgctggaacgccggactggggtggtcaccgcctcatcatccttgtt 26331712



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       ctcaaaccacaaaaacaaat 118
                ||||||||||||||||||||
Sbjct: 11139580 ctcaaaccacaaaaacaaat 11139599



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>gb|AC116172.2| Homo sapiens BAC clone RP11-24L21 from 4, complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   tcatcatccttgttcttttt 352
             ||||||||||||||||||||
Sbjct: 65014 tcatcatccttgttcttttt 65033



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>gb|AC008176.3|AC008176 Homo sapiens BAC clone RP11-451F11 from 7p11.2-p21, complete sequence
          Length = 90180

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ctcaaaccacaaaaacaaat 118
             ||||||||||||||||||||
Sbjct: 52725 ctcaaaccacaaaaacaaat 52706



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>gb|AF237622.1|AF237622 Mus musculus acetyltransferase Tubedown-1 mRNA, complete cds
          Length = 3421

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 330  tcatcatcatccttgttctttttc 353
            |||||||||||||| |||||||||
Sbjct: 1486 tcatcatcatcctttttctttttc 1463



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>emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, complete sequence
          Length = 163120

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   aaaccacaaaaacaaatcct 121
             ||||||||||||||||||||
Sbjct: 77841 aaaccacaaaaacaaatcct 77822



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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 332   atcatcatccttgttctttttctt 355
             ||||||||||||||||||| ||||
Sbjct: 92319 atcatcatccttgttctttctctt 92342



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>gb|AC090673.5| Homo sapiens 12 BAC RP11-366L20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178755

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tttcaaaagcaatctcaaac 105
             ||||||||||||||||||||
Sbjct: 83086 tttcaaaagcaatctcaaac 83105



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>emb|CT009602.4| PTB-121B21, complete sequence
          Length = 236109

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    ctagccactagtcaaatatg 139
              ||||||||||||||||||||
Sbjct: 235222 ctagccactagtcaaatatg 235203



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 165      ttttatcatcaaacatgtctgtctgtct 192
                |||||||||  |||||||||||||||||
Sbjct: 16488742 ttttatcattcaacatgtctgtctgtct 16488715



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>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence
          Length = 191764

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    caaaccacaaaaacaaatcctagc 124
              ||||||||||||||||| ||||||
Sbjct: 183460 caaaccacaaaaacaaagcctagc 183483



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>gb|AC138720.5| Mus musculus BAC clone RP23-192O12 from chromosome 3, complete sequence
          Length = 191825

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    caaaccacaaaaacaaatcctagc 124
              ||||||||||||||||| ||||||
Sbjct: 158125 caaaccacaaaaacaaagcctagc 158102



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>emb|AL391155.3|CNS06C81 Human chromosome 14 DNA sequence BAC R-559M6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160550

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 221   ctacgagtcaggtgccctgaatgg 244
             ||||||||||||||||||| ||||
Sbjct: 45921 ctacgagtcaggtgccctggatgg 45898



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>gb|AF326972.1| Homo sapiens high-mobility group protein isoform C (HMGIC) gene, intron
             3 and partial cds
          Length = 112930

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tttcaaaagcaatctcaaac 105
             ||||||||||||||||||||
Sbjct: 97323 tttcaaaagcaatctcaaac 97342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,490,246
Number of Sequences: 3902068
Number of extensions: 5490246
Number of successful extensions: 119792
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119473
Number of HSP's gapped (non-prelim): 319
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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