ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SO4A1_HUMAN (Q96BD0) Solute carrier organic anion transporter fa... 32 0.70
2LASS3_HUMAN (Q8IU89) LAG1 longevity assurance homolog 3 30 2.7
3TRUA_XANCP (Q8P7R5) tRNA pseudouridine synthase A (EC 5.4.99.12)... 30 2.7
4UTER_HUMAN (P11684) Uteroglobin precursor (Secretoglobin family ... 30 3.5
5TRUA_XANOR (Q5GXR2) tRNA pseudouridine synthase A (EC 5.4.99.12)... 30 3.5
6TRUA_XANAC (Q8PJ25) tRNA pseudouridine synthase A (EC 5.4.99.12)... 30 3.5
7GON4L_MOUSE (Q9DB00) GON-4-like protein (GON-4 homolog) 29 5.9
8CAIT_PROSL (P59334) L-carnitine/gamma-butyrobetaine antiporter 28 7.7
9KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as... 28 7.7

>SO4A1_HUMAN (Q96BD0) Solute carrier organic anion transporter family member 4A1|
           (Solute carrier family 21 member 12) (Sodium-independent
           organic anion transporter E) (Organic anion-transporting
           polypeptide E) (OATP-E) (Colon organic anion
           transporter) (O
          Length = 722

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 337 LCHKGCPIMQQARTHRENVHRRCSC 263
           LCH GCP   +     + V+R CSC
Sbjct: 529 LCHAGCPAATETNVDGQKVYRDCSC 553



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>LASS3_HUMAN (Q8IU89) LAG1 longevity assurance homolog 3|
          Length = 383

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 136 FQAWFWLVRFWLVMFVQLIDL 74
           F+ WFWL RFWL   ++  DL
Sbjct: 5   FKEWFWLERFWLPPTIKWSDL 25



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>TRUA_XANCP (Q8P7R5) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 257

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 393 GCLLDGSNNTMEHTSNAISSVIKVALSCSKHAPTERMCIGDAAAAIHG 250
           G    G     EH   ++ + ++ ALS    AP + +C G   A +HG
Sbjct: 11  GSEFQGWQQLGEHGGPSVQATLQAALSSVADAPIQVVCAGRTDAGVHG 58



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>UTER_HUMAN (P11684) Uteroglobin precursor (Secretoglobin family 1A member 1)|
           (Clara cell phospholipid-binding protein) (CCPBP) (Clara
           cells 10 kDa secretory protein) (CC10) (Urinary protein
           1) (Urine protein 1) (UP1)
          Length = 91

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 155 MVVMFGVPSLVLACSFLACHVCPAYRSVLSTLCVKLP 45
           + V   + +L L CS  +  +CP+++ V+ TL +  P
Sbjct: 3   LAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTP 39



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>TRUA_XANOR (Q5GXR2) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 257

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 393 GCLLDGSNNTMEHTSNAISSVIKVALSCSKHAPTERMCIGDAAAAIHG 250
           G    G     EH   ++ + ++ ALS    AP + +C G   A +HG
Sbjct: 11  GSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHG 58



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>TRUA_XANAC (Q8PJ25) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 257

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 393 GCLLDGSNNTMEHTSNAISSVIKVALSCSKHAPTERMCIGDAAAAIHG 250
           G    G     EH   ++ + ++ ALS    AP + +C G   A +HG
Sbjct: 11  GSEFQGWQQLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHG 58



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>GON4L_MOUSE (Q9DB00) GON-4-like protein (GON-4 homolog)|
          Length = 2260

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 352  QQCHILCHKGCPIMQQARTHRENVHRRCSCCDSR 251
            + C   CH+G P  +  ++ R N H     CDS+
Sbjct: 1872 KDCSCSCHEGGPESKLKKSKRRNCHCSSKVCDSK 1905



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>CAIT_PROSL (P59334) L-carnitine/gamma-butyrobetaine antiporter|
          Length = 504

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 163 AFIWWLCLAFQAWFWLV 113
           AF W++ + F  WFWLV
Sbjct: 54  AFEWYMVIMFGGWFWLV 70



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>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 237 SYPLCRESQQLHLLCTFSRWVRACCMIGQPL*QRIWHCWYVPLCC 371
           S P C++S      CTFS   +ACC               VP+CC
Sbjct: 142 SSPCCQQSSCQSACCTFSPCQQACC---------------VPICC 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,829,049
Number of Sequences: 219361
Number of extensions: 1318592
Number of successful extensions: 3655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3654
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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