Clone Name | rbastl04b01 |
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Clone Library Name | barley_pub |
>gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, full insert mRNA sequence Length = 1200 Score = 573 bits (289), Expect = e-160 Identities = 409/444 (92%), Gaps = 10/444 (2%) Strand = Plus / Minus Query: 83 gaaaccaacggggcgctgacagattgtacgactcgaaacataaccattcactttgcatga 142 ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 1147 gaaaccaacggaacgctgacagattgtacgactccaaacacaaccattcactttgcatga 1088 Query: 143 acagt--cacatggtactaagcataaacgtaactgaagttgccaatgcata--acgtctg 198 ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 1087 acagtgtcacatggtactaagcataaacgtaaaggaagttgccaatgcatataacgtctg 1028 Query: 199 aaccaacaaagcagtatcccgcatgatcagcctagaaaccagcacgtcaggatgcggcga 258 |||||||||||| ||||||| | ||||||||||| | ||||||||||||||||| ||||| Sbjct: 1027 aaccaacaaagcggtatcccacgtgatcagccta-agaccagcacgtcaggatgtggcga 969 Query: 259 aatggtcgcttcaagtcagatttgcaccaagagtccttcgaccatccgccatgctcccgg 318 | |||||||||||||||||||||||| | |||||||||| ||||||||||||||| || Sbjct: 968 agtggtcgcttcaagtcagatttgca---atagtccttcgagcatccgccatgctcctgg 912 Query: 319 atgatatgtgtgcatgaactatgacttcaaaccttctgctttaactgcttatcctctgaa 378 |||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||| Sbjct: 911 atgatatgcatgcatgaactacgacttcat--cttctgctctaactgcttatcctctgaa 854 Query: 379 agaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccaccttattgtcgt 438 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| | Sbjct: 853 agaaatagaggtatcccatgtccttgggcaggtcgaccgatgcagcaaccttattgtcat 794 Query: 439 tgaagattgtccacctcccatctttgaggatatgggcgacatagtgcccacagtgtgtag 498 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 793 tgaagatcgtccacctcccatctttgaggatatgggcgacatagtgcccacagtgtgtag 734 Query: 499 aggttcccatgtggctcacaaatg 522 |||||||||||||||||||||||| Sbjct: 733 aggttcccatgtggctcacaaatg 710
>gb|BT019035.1| Zea mays clone Contig552.F mRNA sequence Length = 1262 Score = 163 bits (82), Expect = 7e-37 Identities = 136/154 (88%) Strand = Plus / Minus Query: 364 tgcttatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcag 423 |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| | | Sbjct: 1034 tgctaatcctctgaaagaaatagaggtagcccatttccttgggcaggtcaacagatactg 975 Query: 424 ccaccttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagt 483 | ||||| ||||||| ||||||||||||||||| |||||||||| ||| || || |||| Sbjct: 974 cgaccttgctgtcgttaaagattgtccacctcccgtctttgaggacatgagctacgtagt 915 Query: 484 gcccacagtgtgtagaggttcccatgtggctcac 517 |||| ||||| |||||||| ||||| |||||||| Sbjct: 914 gcccgcagtgggtagaggtgcccatatggctcac 881
>gb|AY105079.1| Zea mays PCO107820 mRNA sequence Length = 2648 Score = 163 bits (82), Expect = 7e-37 Identities = 136/154 (88%) Strand = Plus / Minus Query: 364 tgcttatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcag 423 |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| | | Sbjct: 2437 tgctaatcctctgaaagaaatagaggtagcccatttccttgggcaggtcaacagatactg 2378 Query: 424 ccaccttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagt 483 | ||||| ||||||| ||||||||||||||||| |||||||||| ||| || || |||| Sbjct: 2377 cgaccttgctgtcgttaaagattgtccacctcccgtctttgaggacatgagctacgtagt 2318 Query: 484 gcccacagtgtgtagaggttcccatgtggctcac 517 |||| ||||| |||||||| ||||| |||||||| Sbjct: 2317 gcccgcagtgggtagaggtgcccatatggctcac 2284
>ref|XM_550320.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2910 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 368 tatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 427 |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| || Sbjct: 2507 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 2448 Query: 428 cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 487 |||| | || ||||| ||| ||||||||| |||||||||| |||||| || |||||||| Sbjct: 2447 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 2388 Query: 488 acagtgtgtagaggttcccatgtggctcacaaa 520 ||| || |||||||| ||||| ||||||||||| Sbjct: 2387 acaatgggtagaggtgcccatatggctcacaaa 2355
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 368 tatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 427 |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| || Sbjct: 3993995 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 3993936 Query: 428 cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 487 |||| | || ||||| ||| ||||||||| |||||||||| |||||| || |||||||| Sbjct: 3993935 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 3993876 Query: 488 acagtgtgtagaggttcccatgtggctcacaaa 520 ||| || |||||||| ||||| ||||||||||| Sbjct: 3993875 acaatgggtagaggtgcccatatggctcacaaa 3993843
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 368 tatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 427 |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| || Sbjct: 115899 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 115840 Query: 428 cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 487 |||| | || ||||| ||| ||||||||| |||||||||| |||||| || |||||||| Sbjct: 115839 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 115780 Query: 488 acagtgtgtagaggttcccatgtggctcacaaa 520 ||| || |||||||| ||||| ||||||||||| Sbjct: 115779 acaatgggtagaggtgcccatatggctcacaaa 115747
>dbj|AK103230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123D13, full insert sequence Length = 2910 Score = 137 bits (69), Expect = 4e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 368 tatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 427 |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| || Sbjct: 2507 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 2448 Query: 428 cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 487 |||| | || ||||| ||| ||||||||| |||||||||| |||||| || |||||||| Sbjct: 2447 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 2388 Query: 488 acagtgtgtagaggttcccatgtggctcacaaa 520 ||| || |||||||| ||||| ||||||||||| Sbjct: 2387 acaatgggtagaggtgcccatatggctcacaaa 2355
>emb|AL133167.4|CNS01DU1 Human chromosome 14 DNA sequence BAC R-185P18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163096 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 449 ccacctcccatctttgaggata 470 |||||||||||||||||||||| Sbjct: 135328 ccacctcccatctttgaggata 135349
>ref|NM_001012525.1| Gallus gallus fibroblast growth factor 7 (keratinocyte growth factor) (FGF7), mRNA Length = 681 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gacgagagaagcaaacaacaa 57 ||||||||||||||||||||| Sbjct: 335 gacgagagaagcaaacaacaa 355
>emb|CR354361.1| Gallus gallus finished cDNA, clone ChEST537f11 Length = 1390 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gacgagagaagcaaacaacaa 57 ||||||||||||||||||||| Sbjct: 747 gacgagagaagcaaacaacaa 767
>dbj|AB193566.1| Gallus gallus Fgf7 mRNA for Fibroblast growth factor 7, complete cds Length = 681 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gacgagagaagcaaacaacaa 57 ||||||||||||||||||||| Sbjct: 335 gacgagagaagcaaacaacaa 355
>emb|BX929277.1| Gallus gallus finished cDNA, clone ChEST984o1 Length = 608 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gacgagagaagcaaacaacaa 57 ||||||||||||||||||||| Sbjct: 340 gacgagagaagcaaacaacaa 360
>gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, complete sequence Length = 206029 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 gcttatcctctgaaagaaatagag 388 ||||||||||||| |||||||||| Sbjct: 196665 gcttatcctctgagagaaatagag 196642
>gb|AC146041.2| Pan troglodytes BAC clone RP43-98A7 from 7, complete sequence Length = 120644 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 gcttatcctctgaaagaaatagag 388 ||||||||||||| |||||||||| Sbjct: 61558 gcttatcctctgagagaaatagag 61581
>gb|AC124441.5| Mus musculus BAC clone RP24-176L17 from chromosome 18, complete sequence Length = 190119 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 gtagaggttcccatgtggct 514 |||||||||||||||||||| Sbjct: 146899 gtagaggttcccatgtggct 146880
>gb|AC146378.2| Pan troglodytes BAC clone RP43-93I8 from 7, complete sequence Length = 135955 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 gcttatcctctgaaagaaatagag 388 ||||||||||||| |||||||||| Sbjct: 104585 gcttatcctctgagagaaatagag 104608
>emb|CR713366.2|CNS0GDDU Tetraodon nigroviridis full-length cDNA Length = 491 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 379 agaaatagaggtatcccatgtccttggg 406 |||| ||||||||||||||||| ||||| Sbjct: 65 agaagtagaggtatcccatgtctttggg 38
>ref|XM_962063.1| PREDICTED: Tribolium castaneum similar to CG12082-PA (LOC655510), mRNA Length = 2385 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 agccaccttattgtcgttgaagat 445 |||||||||||||||||| ||||| Sbjct: 2328 agccaccttattgtcgttaaagat 2305
>emb|AL772227.5| Mouse DNA sequence from clone RP23-1O16 on chromosome 11 Contains two novel genes, the 5' end of the gene for a novel protein similar to human Class V ATPase type 10B (ATP10B) (9030605H24Rik) and the 3' end of a novel gene, complete sequence Length = 178001 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gagagaagcaaacaacaatg 59 |||||||||||||||||||| Sbjct: 76600 gagagaagcaaacaacaatg 76581
>gb|AC024563.6| Homo sapiens chromosome 19 clone CTC-451A6, complete sequence Length = 158541 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tctgaaagaaatagaggtat 392 |||||||||||||||||||| Sbjct: 88831 tctgaaagaaatagaggtat 88812
>gb|AC011467.7| Homo sapiens chromosome 19 clone CTC-457E21, complete sequence Length = 187888 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tctgaaagaaatagaggtat 392 |||||||||||||||||||| Sbjct: 1670 tctgaaagaaatagaggtat 1689
>gb|AC105129.4| Homo sapiens chromosome 15, clone RP11-349G13, complete sequence Length = 198295 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ccatgtccttgggcaggtca 413 |||||||||||||||||||| Sbjct: 120698 ccatgtccttgggcaggtca 120679
>gb|AC008626.6| Homo sapiens chromosome 19 clone CTB-159G17, complete sequence Length = 155439 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tctgaaagaaatagaggtat 392 |||||||||||||||||||| Sbjct: 4118 tctgaaagaaatagaggtat 4099
>dbj|AK033531.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030605H24 product:hypothetical Membrane all-alpha structure containing protein, full insert sequence Length = 3477 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gagagaagcaaacaacaatg 59 |||||||||||||||||||| Sbjct: 1093 gagagaagcaaacaacaatg 1074
>dbj|AK036920.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930024M01 product:unclassifiable, full insert sequence Length = 2280 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gagagaagcaaacaacaatg 59 |||||||||||||||||||| Sbjct: 1354 gagagaagcaaacaacaatg 1335
>gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromosome unknown, complete sequence Length = 174983 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 aatgcataacgtctgaacca 203 |||||||||||||||||||| Sbjct: 62564 aatgcataacgtctgaacca 62583
>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence Length = 173169 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 cgaataaaattccaactaaa 81 |||||||||||||||||||| Sbjct: 40755 cgaataaaattccaactaaa 40774
>emb|AL163760.4|CNS01RI7 Human chromosome 14 DNA sequence BAC R-68I8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174860 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccttctgctttaactgctta 369 |||||||||||||||||||| Sbjct: 104548 ccttctgctttaactgctta 104529
>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25, complete sequence Length = 196037 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 aaaccagcacgtcaggatgc 253 |||||||||||||||||||| Sbjct: 95282 aaaccagcacgtcaggatgc 95263
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 atgtccttgggcaggtcaac 415 |||||||||||||||||||| Sbjct: 1541008 atgtccttgggcaggtcaac 1541027 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,159,335 Number of Sequences: 3902068 Number of extensions: 4159335 Number of successful extensions: 68047 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67965 Number of HSP's gapped (non-prelim): 77 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)