ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450107.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
3dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
4dbj|AK103665.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
5gb|AC138114.3| Mus musculus BAC clone RP24-247F6 from chromosome... 44 0.33
6gb|AC132440.3| Mus musculus BAC clone RP23-239I24 from chromosom... 44 0.33
7gb|AC123732.9| Mus musculus chromosome 1, clone RP23-459I8, comp... 42 1.3
8gb|AC102119.10| Mus musculus chromosome 19, clone RP23-173J6, co... 42 1.3
9gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, com... 42 1.3
10gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, com... 42 1.3
11gb|AC165239.3| Mus musculus chromosome 19, clone RP24-73C2, comp... 42 1.3
12emb|AL136097.10| Human DNA sequence from clone RP11-62C3 on chro... 42 1.3
13emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 ... 42 1.3
14gb|AC015801.25|AC015801 Homo sapiens chromosome 17, clone RP11-8... 42 1.3
15dbj|AK174886.1| Ciona intestinalis cDNA, clone:citb030d06, full ... 42 1.3
16gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, compl... 42 1.3
17gb|AF092354.1|AF092354 Terranatos dolichopterus 12s ribosomal RN... 42 1.3
18gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, com... 42 1.3
19gb|AC153899.3| Mus musculus BAC RP23-128C4 (Roswell Park Cancer... 40 5.1
20gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 40 5.1
21gb|AC101689.12| Mus musculus chromosome 1, clone RP23-217C21, co... 40 5.1
22gb|AC166488.5| Mus musculus chromosome 1, clone RP23-245C4, comp... 40 5.1
23gb|AC116895.12| Mus musculus chromosome 8, clone RP24-531C8, com... 40 5.1
24gb|AC165164.4| Mus musculus BAC clone RP23-117C21 from chromosom... 40 5.1
25ref|XM_588329.2| PREDICTED: Bos taurus similar to steroid recept... 40 5.1
26gb|AC109210.26| Mus musculus chromosome 7, clone RP23-9C7, compl... 40 5.1
27emb|AL136305.14| Human DNA sequence from clone RP1-259A10 on chr... 40 5.1
28emb|AL135790.7| Human DNA sequence from clone RP11-87N24 on chro... 40 5.1
29emb|AL008583.1|HS327J16 Human DNA sequence from clone RP3-327J16... 40 5.1
30emb|X55026.1|MTPACG Podospora anserina complete mitochondrial ge... 40 5.1
31emb|X13164.1|MIPAND1B Podospora anserina mitochondrial ND1 gene ... 40 5.1
32gb|AC160633.3| Mus musculus chromosome 8, clone RP23-407P24, com... 40 5.1
33gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Can... 40 5.1
34ref|NM_001013527.1| Danio rerio zgc:103605 (zgc:103605), mRNA 40 5.1
35ref|XM_624429.1| PREDICTED: Apis mellifera similar to MGC80227 p... 40 5.1
36dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
37gb|BC090903.1| Danio rerio zgc:103605, mRNA (cDNA clone MGC:1036... 40 5.1
38emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.1
39dbj|AK105692.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
40dbj|AK069805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
41gb|AC122197.4| Mus musculus BAC clone RP23-55A6 from 10, complet... 40 5.1
42emb|BX957287.9| Zebrafish DNA sequence from clone DKEYP-59A8 in ... 40 5.1
43gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
44emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.1
45emb|Z50031.1|MTPCATND1 P.comata mitochondrial DNA for ND1 gene (... 40 5.1
46emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chro... 40 5.1
47dbj|AB034225.1| Flavobacterium aquatile gyrB gene for DNA gyrase... 40 5.1
48emb|AL591366.15| Mouse DNA sequence from clone RP23-80N1 on chro... 40 5.1 
>ref|XM_450107.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3007

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 148/183 (80%), Gaps = 17/183 (9%)
 Strand = Plus / Minus

                                                                        
Query: 109  attacacccctgaatctgggaaagct---aaagaggtgacaggggg--agatctaaagtt 163
            |||||||||||||||| |||||||||   |||| || || ||||||  ||||||| ||||
Sbjct: 2884 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 2825

                                                                        
Query: 164  ---ctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 220
               ||| |||||||||||||||||||  | ||| ||||||||||       |||||||||
Sbjct: 2824 tttcttcttcttatgtatggtacacacaagaacattacgatcttc------gatcatcca 2771

                                                                        
Query: 221  catgggg-tcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 279
            | ||||| || ||||||||   | |||||||||||||||||||| ||  |||||||||||
Sbjct: 2770 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 2713

               
Query: 280  agg 282
            |||
Sbjct: 2712 agg 2710
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 148/183 (80%), Gaps = 17/183 (9%)
 Strand = Plus / Minus

                                                                           
Query: 109     attacacccctgaatctgggaaagct---aaagaggtgacaggggg--agatctaaagtt 163
               |||||||||||||||| |||||||||   |||| || || ||||||  ||||||| ||||
Sbjct: 1732686 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 1732627

                                                                           
Query: 164     ---ctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 220
                  ||| |||||||||||||||||||  | ||| ||||||||||       |||||||||
Sbjct: 1732626 tttcttcttcttatgtatggtacacacaagaacattacgatcttc------gatcatcca 1732573

                                                                           
Query: 221     catgggg-tcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 279
               | ||||| || ||||||||   | |||||||||||||||||||| ||  |||||||||||
Sbjct: 1732572 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 1732515

                  
Query: 280     agg 282
               |||
Sbjct: 1732514 agg 1732512
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>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0415D04
          Length = 176627

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 148/183 (80%), Gaps = 17/183 (9%)
 Strand = Plus / Minus

                                                                          
Query: 109    attacacccctgaatctgggaaagct---aaagaggtgacaggggg--agatctaaagtt 163
              |||||||||||||||| |||||||||   |||| || || ||||||  ||||||| ||||
Sbjct: 119258 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 119199

                                                                          
Query: 164    ---ctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 220
                 ||| |||||||||||||||||||  | ||| ||||||||||       |||||||||
Sbjct: 119198 tttcttcttcttatgtatggtacacacaagaacattacgatcttc------gatcatcca 119145

                                                                          
Query: 221    catgggg-tcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 279
              | ||||| || ||||||||   | |||||||||||||||||||| ||  |||||||||||
Sbjct: 119144 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 119087

                 
Query: 280    agg 282
              |||
Sbjct: 119086 agg 119084
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>dbj|AK103665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135J15, full
            insert sequence
          Length = 3007

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 148/183 (80%), Gaps = 17/183 (9%)
 Strand = Plus / Minus

                                                                        
Query: 109  attacacccctgaatctgggaaagct---aaagaggtgacaggggg--agatctaaagtt 163
            |||||||||||||||| |||||||||   |||| || || ||||||  ||||||| ||||
Sbjct: 2884 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 2825

                                                                        
Query: 164  ---ctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 220
               ||| |||||||||||||||||||  | ||| ||||||||||       |||||||||
Sbjct: 2824 tttcttcttcttatgtatggtacacacaagaacattacgatcttc------gatcatcca 2771

                                                                        
Query: 221  catgggg-tcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 279
            | ||||| || ||||||||   | |||||||||||||||||||| ||  |||||||||||
Sbjct: 2770 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 2713

               
Query: 280  agg 282
            |||
Sbjct: 2712 agg 2710
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>gb|AC138114.3| Mus musculus BAC clone RP24-247F6 from chromosome 6, complete sequence
          Length = 170688

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 41     aataaaggaatatcagaaggtatcat 66
              |||||| |||||||||||||||||||
Sbjct: 147808 aataaaagaatatcagaaggtatcat 147833
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>gb|AC132440.3| Mus musculus BAC clone RP23-239I24 from chromosome 8, complete sequence
          Length = 183218

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 264   tagataaatcatcaaaaggagg 285
             ||||||||||||||||||||||
Sbjct: 72606 tagataaatcatcaaaaggagg 72627
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>gb|AC123732.9| Mus musculus chromosome 1, clone RP23-459I8, complete sequence
          Length = 158620

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    tgaataaaggaatatcagaag 59
             |||||||||||||||||||||
Sbjct: 12766 tgaataaaggaatatcagaag 12746
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>gb|AC102119.10| Mus musculus chromosome 19, clone RP23-173J6, complete sequence
          Length = 218170

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 291    ctcatctgctggctgctgcta 311
              |||||||||||||||||||||
Sbjct: 217427 ctcatctgctggctgctgcta 217407
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>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence
          Length = 157629

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 41     aataaaggaatatcagaaggtatcatcat 69
              |||||||| || |||||||||||||||||
Sbjct: 114173 aataaagggatttcagaaggtatcatcat 114201
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>gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, complete sequence
          Length = 236163

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     tgaataaaggaatatcagaag 59
              |||||||||||||||||||||
Sbjct: 227599 tgaataaaggaatatcagaag 227579
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>gb|AC165239.3| Mus musculus chromosome 19, clone RP24-73C2, complete sequence
          Length = 208461

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   ctcatctgctggctgctgcta 311
             |||||||||||||||||||||
Sbjct: 67046 ctcatctgctggctgctgcta 67026
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>emb|AL136097.10| Human DNA sequence from clone RP11-62C3 on chromosome 9q22.1-22.33
              Contains a novel pseudogene, a novel gene, the IARS gene
              for isoleucine-tRNA synthetase, the  gene for a novel
              protein (FLJ20736), the 5' end of a novel gene, a UPF0183
              protein pseudogene, the NOL8 gene for nucleolar protein 8
              and three CpG islands, complete sequence
          Length = 193488

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     gtatcatcatttcagtccaaa 80
              |||||||||||||||||||||
Sbjct: 181591 gtatcatcatttcagtccaaa 181571
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>emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 on chromosome 6p24.1-25.3
             Contains a novel gene, complete sequence
          Length = 131819

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   taaagttctttttcttatgta 177
             |||||||||||||||||||||
Sbjct: 95137 taaagttctttttcttatgta 95157
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>gb|AC015801.25|AC015801 Homo sapiens chromosome 17, clone RP11-854A13, complete sequence
          Length = 185351

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 133   ctaaagaggtgacagggggagatct 157
             ||||||||||||||||| |||||||
Sbjct: 92548 ctaaagaggtgacagggagagatct 92524
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>dbj|AK174886.1| Ciona intestinalis cDNA, clone:citb030d06, full insert sequence
          Length = 576

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 162 ttctttttcttatgtatggta 182
           |||||||||||||||||||||
Sbjct: 397 ttctttttcttatgtatggta 417
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>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence
          Length = 195874

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 41     aataaaggaatatcagaaggtatcatcat 69
              |||||||| || |||||||||||||||||
Sbjct: 116164 aataaagggatttcagaaggtatcatcat 116136
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>gb|AF092354.1|AF092354 Terranatos dolichopterus 12s ribosomal RNA gene, partial sequence;
           tRNA-Xxx gene, complete sequence; and 16s ribosomal RNA
           gene, partial sequence
          Length = 543

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 267 ataaatcatcaaaaggaggca 287
           |||||||||||||||||||||
Sbjct: 392 ataaatcatcaaaaggaggca 412
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>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence
          Length = 226189

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 41     aataaaggaatatcagaaggtatcatcat 69
              |||||||| || |||||||||||||||||
Sbjct: 169996 aataaagggatttcagaaggtatcatcat 170024
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>gb|AC153899.3| Mus musculus  BAC RP23-128C4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 164582

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ttttgcacattttctttcct 39
              ||||||||||||||||||||
Sbjct: 140863 ttttgcacattttctttcct 140882
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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 254    ttatcaactatagataaatcatca 277
              ||||||||||||||||| ||||||
Sbjct: 194640 ttatcaactatagataattcatca 194663
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>gb|AC101689.12| Mus musculus chromosome 1, clone RP23-217C21, complete sequence
          Length = 189241

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     atgccttttgcacattttct 34
              ||||||||||||||||||||
Sbjct: 175955 atgccttttgcacattttct 175936
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>gb|AC166488.5| Mus musculus chromosome 1, clone RP23-245C4, complete sequence
          Length = 194413

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     atgccttttgcacattttct 34
              ||||||||||||||||||||
Sbjct: 129583 atgccttttgcacattttct 129602
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>gb|AC116895.12| Mus musculus chromosome 8, clone RP24-531C8, complete sequence
          Length = 170041

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    gttctttttcttatgtatgg 180
              ||||||||||||||||||||
Sbjct: 148277 gttctttttcttatgtatgg 148258
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>gb|AC165164.4| Mus musculus BAC clone RP23-117C21 from chromosome 10, complete sequence
          Length = 189986

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    ctcatctgctggctgctgct 310
              ||||||||||||||||||||
Sbjct: 150492 ctcatctgctggctgctgct 150511
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>ref|XM_588329.2| PREDICTED: Bos taurus similar to steroid receptor-interacting SNF2
           domain protein (LOC511069), mRNA
          Length = 4412

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 cactactggtcttaaatctc 331
           ||||||||||||||||||||
Sbjct: 832 cactactggtcttaaatctc 813
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>gb|AC109210.26| Mus musculus chromosome 7, clone RP23-9C7, complete sequence
          Length = 236592

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    agaaggtatcatcatttcag 74
             ||||||||||||||||||||
Sbjct: 53391 agaaggtatcatcatttcag 53372
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>emb|AL136305.14| Human DNA sequence from clone RP1-259A10 on chromosome 6p22.1-23
             Contains the gene for an ssDNA binding protein and a CpG
             island, complete sequence
          Length = 150520

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    cttttgcacattttctttcctgaa 42
             |||||||||||||| |||||||||
Sbjct: 47922 cttttgcacattttttttcctgaa 47899
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>emb|AL135790.7| Human DNA sequence from clone RP11-87N24 on chromosome 9p22.1-23
             Contains a ribosomal protein S12 (RPS12) pseudogene, 2
             novel genes, the 5' end of a variant of the PTPRD gene for
             protein tyrosine phosphatase, receptor type, D (HPTP,
             PTPD, HPTPD). and a CpG island, complete sequence
          Length = 176273

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 57    aaggtatcatcatttcagtccaaa 80
             |||||||||||||| |||||||||
Sbjct: 75388 aaggtatcatcattccagtccaaa 75411
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>emb|AL008583.1|HS327J16 Human DNA sequence from clone RP3-327J16 on chromosome 22q12.3-13.2,
             complete sequence
          Length = 111746

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ccttctaaattctgatgcct 20
             ||||||||||||||||||||
Sbjct: 25399 ccttctaaattctgatgcct 25418
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>emb|X55026.1|MTPACG Podospora anserina complete mitochondrial genome
          Length = 100314

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    ctgaataaaggaatatcaga 57
             ||||||||||||||||||||
Sbjct: 97789 ctgaataaaggaatatcaga 97808
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>emb|X13164.1|MIPAND1B Podospora anserina mitochondrial ND1 gene exons 3 and 4
          Length = 5803

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   ctgaataaaggaatatcaga 57
            ||||||||||||||||||||
Sbjct: 3121 ctgaataaaggaatatcaga 3140
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>gb|AC160633.3| Mus musculus chromosome 8, clone RP23-407P24, complete sequence
          Length = 203628

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   gttctttttcttatgtatgg 180
             ||||||||||||||||||||
Sbjct: 18810 gttctttttcttatgtatgg 18829
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>gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202827

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    caactatagataaatcatca 277
              ||||||||||||||||||||
Sbjct: 126371 caactatagataaatcatca 126390
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>ref|NM_001013527.1| Danio rerio zgc:103605 (zgc:103605), mRNA
          Length = 2001

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   ccttttgcacattttctttc 37
            ||||||||||||||||||||
Sbjct: 1596 ccttttgcacattttctttc 1615
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>ref|XM_624429.1| PREDICTED: Apis mellifera similar to MGC80227 protein (LOC552050),
           mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 tttctacaccttctcaactt 354
           ||||||||||||||||||||
Sbjct: 135 tttctacaccttctcaactt 116
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 108      aattacacccctgaatctgg 127
                ||||||||||||||||||||
Sbjct: 20897954 aattacacccctgaatctgg 20897973
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>gb|BC090903.1| Danio rerio zgc:103605, mRNA (cDNA clone MGC:103605 IMAGE:7250553),
            complete cds
          Length = 2001

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   ccttttgcacattttctttc 37
            ||||||||||||||||||||
Sbjct: 1596 ccttttgcacattttctttc 1615
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>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101075

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aattacacccctgaatctgg 127
             ||||||||||||||||||||
Sbjct: 99681 aattacacccctgaatctgg 99700
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>dbj|AK105692.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C06, full
            insert sequence
          Length = 2509

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  aattacacccctgaatctgg 127
            ||||||||||||||||||||
Sbjct: 1719 aattacacccctgaatctgg 1738
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>dbj|AK069805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030L10, full
            insert sequence
          Length = 1829

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  aattacacccctgaatctgg 127
            ||||||||||||||||||||
Sbjct: 998  aattacacccctgaatctgg 1017
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>gb|AC122197.4| Mus musculus BAC clone RP23-55A6 from 10, complete sequence
          Length = 232763

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   ctcatctgctggctgctgct 310
             ||||||||||||||||||||
Sbjct: 74566 ctcatctgctggctgctgct 74585
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>emb|BX957287.9| Zebrafish DNA sequence from clone DKEYP-59A8 in linkage group 20,
              complete sequence
          Length = 154419

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     tgaataaaggaatatcagaa 58
              ||||||||||||||||||||
Sbjct: 132925 tgaataaaggaatatcagaa 132906
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 108      aattacacccctgaatctgg 127
                ||||||||||||||||||||
Sbjct: 20824168 aattacacccctgaatctgg 20824187
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>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aattacacccctgaatctgg 127
             ||||||||||||||||||||
Sbjct: 61041 aattacacccctgaatctgg 61022
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>emb|Z50031.1|MTPCATND1 P.comata mitochondrial DNA for ND1 gene (strain ATCC36713)
          Length = 2683

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  ctgaataaaggaatatcaga 57
           ||||||||||||||||||||
Sbjct: 710 ctgaataaaggaatatcaga 729
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>emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chromosome X, complete
             sequence
          Length = 197688

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   agttctttttcttatgtatg 179
             ||||||||||||||||||||
Sbjct: 53722 agttctttttcttatgtatg 53703
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>dbj|AB034225.1| Flavobacterium aquatile gyrB gene for DNA gyrase B subunit, partial
           cds
          Length = 1422

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  tctttcctgaataaaggaat 51
           ||||||||||||||||||||
Sbjct: 271 tctttcctgaataaaggaat 290
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>emb|AL591366.15| Mouse DNA sequence from clone RP23-80N1 on chromosome 11, complete
             sequence
          Length = 117612

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    gtccaaagaggggctctaaaactc 97
             ||||||||||||| ||||||||||
Sbjct: 77732 gtccaaagagggggtctaaaactc 77755


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,538,881
Number of Sequences: 3902068
Number of extensions: 4538881
Number of successful extensions: 83575
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83394
Number of HSP's gapped (non-prelim): 177
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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