ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 33 0.26
2LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 33 0.26
3LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 32 0.76
4LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 31 1.7
5LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 31 1.7
6LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 30 3.8
7LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 30 3.8
8LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12) 29 4.9
9LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 29 4.9
10LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 28 8.4
11LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 28 8.4
12LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 28 8.4
13LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 28 8.4

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = -3

Query: 453 HTGQAEGLTARGIPNSISI 397
           H G A GLTA+GIPNSISI
Sbjct: 844 HKGAAAGLTAKGIPNSISI 862



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -3

Query: 447 GQAEGLTARGIPNSISI 397
           G AEG+TARGIPNSISI
Sbjct: 847 GAAEGITARGIPNSISI 863



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -3

Query: 450 TGQAEGLTARGIPNSISI 397
           TG A G+TA+GIPNSISI
Sbjct: 849 TGAAAGITAKGIPNSISI 866



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = -3

Query: 453 HTGQAEGLTARGIPNSISI 397
           H    EGLT RGIPNSISI
Sbjct: 846 HPSSKEGLTFRGIPNSISI 864



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 447 GQAEGLTARGIPNSISI 397
           G A GL+ARGIPNSISI
Sbjct: 854 GDAAGLSARGIPNSISI 870



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -3

Query: 453 HTGQAEGLTARGIPNSISI 397
           H    EGLT +GIPNSISI
Sbjct: 846 HRSSEEGLTFKGIPNSISI 864



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -3

Query: 441 AEGLTARGIPNSISI 397
           +EGLT RGIPNSISI
Sbjct: 851 SEGLTCRGIPNSISI 865



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>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -3

Query: 450 TGQAEGLTARGIPNSISI 397
           T + EGLT RGIPNSISI
Sbjct: 845 TCEDEGLTFRGIPNSISI 862



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 438 EGLTARGIPNSISI 397
           EGLT RGIPNSISI
Sbjct: 853 EGLTCRGIPNSISI 866



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 438 EGLTARGIPNSISI 397
           EGLT RGIPNSISI
Sbjct: 826 EGLTFRGIPNSISI 839



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 438 EGLTARGIPNSISI 397
           EGLT RGIPNSISI
Sbjct: 848 EGLTFRGIPNSISI 861



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 438 EGLTARGIPNSISI 397
           EGLT RGIPNSISI
Sbjct: 844 EGLTFRGIPNSISI 857



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 438 EGLTARGIPNSISI 397
           EGLT RGIPNSISI
Sbjct: 840 EGLTFRGIPNSISI 853


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,677,961
Number of Sequences: 219361
Number of extensions: 1443065
Number of successful extensions: 3503
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3500
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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