ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chr... 46 0.098
2gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosom... 44 0.39
3gb|AC107661.10| Mus musculus chromosome 10, clone RP23-174M1, co... 44 0.39
4emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on ch... 44 0.39
5emb|AL355102.5|CNS05TCL Human chromosome 14 DNA sequence BAC R-4... 44 0.39
6emb|AL928826.9| Mouse DNA sequence from clone RP23-456N9 on chro... 44 0.39
7gb|AC112988.7| Mus musculus chromosome 5, clone RP24-294H5, comp... 42 1.5
8gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, compl... 42 1.5
9gb|AC163990.2| Mus musculus chromosome 5, clone RP24-166G8, comp... 42 1.5
10gb|AC122744.16| Mus musculus chromosome 5, clone RP23-37I24, com... 42 1.5
11gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, com... 40 6.0
12gb|AC135736.6| Mus musculus BAC clone RP23-251A14 from chromosom... 40 6.0
13gb|AC122392.3| Mus musculus BAC clone RP24-81I14 from chromosome... 40 6.0
14emb|AL607038.3| Human DNA sequence from clone RP11-292B14 on chr... 40 6.0
15emb|AL357499.10| Human DNA sequence from clone RP11-455L10 on ch... 40 6.0
16emb|Z95395.1|SPAC3A12 S.pombe chromosome I cosmid c3A12 40 6.0
17gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete s... 40 6.0
18gb|AC008344.2|AC008344 Drosophila melanogaster, chromosome 2R, r... 40 6.0
19gb|AC008096.3|AC008096 Drosophila melanogaster, chromosome 2R, r... 40 6.0
20gb|AE003796.3| Drosophila melanogaster chromosome 2R, section 54... 40 6.0
21emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr... 40 6.0
22emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 40 6.0

>emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chromosome 11 Contains the
             5' end of a novel gene, three novel genes, the Slc6a4 gene
             for solute carrier family 6 (neurotransmitter transporter,
             serotonin) member 4, the Blmh gene for bleomycin hydrolase
             and three CpG islands, complete sequence
          Length = 229289

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 108   agctacagcccaaactggaagtt 130
             |||||||||||||||||||||||
Sbjct: 37222 agctacagcccaaactggaagtt 37200



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>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence
          Length = 181527

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 225   accaccaaaaccacacactatt 246
             ||||||||||||||||||||||
Sbjct: 36530 accaccaaaaccacacactatt 36551



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>gb|AC107661.10| Mus musculus chromosome 10, clone RP23-174M1, complete sequence
          Length = 187233

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 159    agattggaggtgggaatttgaa 180
              ||||||||||||||||||||||
Sbjct: 115723 agattggaggtgggaatttgaa 115744



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>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete
           sequence
          Length = 145652

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 225 accaccaaaaccacacactatt 246
           ||||||||||||||||||||||
Sbjct: 764 accaccaaaaccacacactatt 785



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>emb|AL355102.5|CNS05TCL Human chromosome 14 DNA sequence BAC R-404P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201844

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 126   aagtttgggaaccatgacacag 147
             ||||||||||||||||||||||
Sbjct: 24239 aagtttgggaaccatgacacag 24218



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>emb|AL928826.9| Mouse DNA sequence from clone RP23-456N9 on chromosome 2, complete
              sequence
          Length = 180533

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 225    accaccaaaaccacacactatt 246
              ||||||||||||||||||||||
Sbjct: 179297 accaccaaaaccacacactatt 179318



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>gb|AC112988.7| Mus musculus chromosome 5, clone RP24-294H5, complete sequence
          Length = 151194

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   accaccaaaaccacacactat 245
             |||||||||||||||||||||
Sbjct: 71702 accaccaaaaccacacactat 71682



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>gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, complete sequence
          Length = 206833

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   ggaagtttgggaaccatgaca 144
             |||||||||||||||||||||
Sbjct: 86129 ggaagtttgggaaccatgaca 86109



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>gb|AC163990.2| Mus musculus chromosome 5, clone RP24-166G8, complete sequence
          Length = 172641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 225   accaccaaaaccacacactat 245
             |||||||||||||||||||||
Sbjct: 74150 accaccaaaaccacacactat 74170



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>gb|AC122744.16| Mus musculus chromosome 5, clone RP23-37I24, complete sequence
          Length = 175214

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    accaccaaaaccacacactat 245
              |||||||||||||||||||||
Sbjct: 120243 accaccaaaaccacacactat 120223



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>gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, complete sequence
          Length = 209618

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   caccaaaaccacacactatt 246
             ||||||||||||||||||||
Sbjct: 34189 caccaaaaccacacactatt 34170



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>gb|AC135736.6| Mus musculus BAC clone RP23-251A14 from chromosome 16, complete sequence
          Length = 193253

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 421    tcctgcttccaccccctggcattc 444
              |||||||||||| |||||||||||
Sbjct: 146985 tcctgcttccacaccctggcattc 147008



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>gb|AC122392.3| Mus musculus BAC clone RP24-81I14 from chromosome 16, complete
            sequence
          Length = 195550

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 421  tcctgcttccaccccctggcattc 444
            |||||||||||| |||||||||||
Sbjct: 3773 tcctgcttccacaccctggcattc 3796



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>emb|AL607038.3| Human DNA sequence from clone RP11-292B14 on chromosome 13 Contains
            part of the UGCGL2 gene for UDP-glucose ceramide
            glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485) and
            a CpG island, complete sequence
          Length = 63266

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    ggtacagctccagacttttt 20
            ||||||||||||||||||||
Sbjct: 4088 ggtacagctccagacttttt 4107



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>emb|AL357499.10| Human DNA sequence from clone RP11-455L10 on chromosome 1 Contains part
             of the CHRM3 gene for muscarinic 3 cholinergic receptor,
             complete sequence
          Length = 150651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aacaaaaataaaggtgcagt 98
             ||||||||||||||||||||
Sbjct: 47249 aacaaaaataaaggtgcagt 47268



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>emb|Z95395.1|SPAC3A12 S.pombe chromosome I cosmid c3A12
          Length = 37013

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 79   aacaaaaataaaggtgcagtacta 102
            ||||||||||||||||| ||||||
Sbjct: 5272 aacaaaaataaaggtgctgtacta 5249



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>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence
          Length = 216143

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   atttgaacataccagctgct 193
             ||||||||||||||||||||
Sbjct: 11279 atttgaacataccagctgct 11298



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>gb|AC008344.2|AC008344 Drosophila melanogaster, chromosome 2R, region 56C-56D, BAC clone
              BACR19I21, complete sequence
          Length = 171981

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 249    ttagtaacattggatatcgatttt 272
              ||||||||||||||||| ||||||
Sbjct: 134420 ttagtaacattggatatggatttt 134443



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>gb|AC008096.3|AC008096 Drosophila melanogaster, chromosome 2R, region 56C-56D, BAC clone
              BACR21D20, complete sequence
          Length = 176813

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 249    ttagtaacattggatatcgatttt 272
              ||||||||||||||||| ||||||
Sbjct: 122185 ttagtaacattggatatggatttt 122162



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>gb|AE003796.3| Drosophila melanogaster chromosome 2R, section 54 of 73 of the complete
              sequence
          Length = 277421

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 249    ttagtaacattggatatcgatttt 272
              ||||||||||||||||| ||||||
Sbjct: 144873 ttagtaacattggatatggatttt 144896



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>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
              sequence
          Length = 225684

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 421    tcctgcttccaccccctggcattc 444
              |||||||||||| |||||||||||
Sbjct: 205164 tcctgcttccacgccctggcattc 205187



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>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
              sequence
          Length = 240977

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      ctccagactttttatttaaa 27
              ||||||||||||||||||||
Sbjct: 209591 ctccagactttttatttaaa 209610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,608,734
Number of Sequences: 3902068
Number of extensions: 4608734
Number of successful extensions: 88964
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88921
Number of HSP's gapped (non-prelim): 43
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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