ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl04a07 |
|---|---|
| Clone Library Name | barley_pub |
>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,| chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 917 Score = 99.4 bits (246), Expect = 2e-21 Identities = 49/53 (92%), Positives = 49/53 (92%) Frame = -3 Query: 300 AQLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLGAPS 142 AQL GSDNI AFTT RYKEQPLIVRGPGAGAEVTAGGVFCDILRL SYLGAPS Sbjct: 865 AQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRLASYLGAPS 917
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,| chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 920 Score = 98.2 bits (243), Expect = 5e-21 Identities = 48/53 (90%), Positives = 49/53 (92%) Frame = -3 Query: 300 AQLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLGAPS 142 AQL GSDNI AFTT RYK+QPLIVRGPGAGAEVTAGGVFCDILRL SYLGAPS Sbjct: 868 AQLSGSDNIIAFTTSRYKDQPLIVRGPGAGAEVTAGGVFCDILRLSSYLGAPS 920
>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,| chloroplast precursor (AK-HD) (AK-HSDH) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (Fragment) Length = 921 Score = 89.0 bits (219), Expect = 3e-18 Identities = 44/53 (83%), Positives = 46/53 (86%) Frame = -3 Query: 300 AQLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLGAPS 142 AQL GSDNI AFTT RY +QP I+RGPGAGAEVTAGGVF DILRL SYLGAPS Sbjct: 869 AQLSGSDNINAFTTERYNKQPPIIRGPGAGAEVTAGGVFSDILRLASYLGAPS 921
>DHOM_SCHPO (O94671) Probable homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 376 Score = 52.8 bits (125), Expect = 2e-07 Identities = 27/51 (52%), Positives = 35/51 (68%) Frame = -3 Query: 300 AQLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLGA 148 A L SDNI +FTT RY +PL+V G GAGA VTA GV D++++ S + A Sbjct: 320 ANLQSSDNIISFTTKRYHTRPLVVIGAGAGAAVTAAGVLGDMIKIMSQVRA 370
>AK2H_ECOLI (P00562) Bifunctional aspartokinase/homoserine dehydrogenase II| (AKII-HDII) [Includes: Aspartokinase II (EC 2.7.2.4); Homoserine dehydrogenase II (EC 1.1.1.3)] Length = 809 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/49 (46%), Positives = 31/49 (63%) Frame = -3 Query: 300 AQLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYL 154 A L DN+ A + Y++ PL++RGPGAG +VTAG + DI RL L Sbjct: 761 ASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINRLAQLL 809
>DHOM_YEAST (P31116) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 359 Score = 45.8 bits (107), Expect = 3e-05 Identities = 22/49 (44%), Positives = 32/49 (65%) Frame = -3 Query: 300 AQLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYL 154 A L GSDN+ + T RY P++++G GAGA VTA GV D++++ L Sbjct: 312 ASLKGSDNVISIKTKRYTN-PVVIQGAGAGAAVTAAGVLGDVIKIAQRL 359
>AK1H_SERMA (P27725) Bifunctional aspartokinase/homoserine dehydrogenase I| (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4); Homoserine dehydrogenase I (EC 1.1.1.3)] Length = 819 Score = 43.9 bits (102), Expect = 1e-04 Identities = 21/42 (50%), Positives = 29/42 (69%) Frame = -3 Query: 282 DNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSY 157 +N AF + Y+ PL++RG GAG +VTA GVF D+LR S+ Sbjct: 774 ENALAFYSRYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSW 815
>AKH_HAEIN (P44505) Bifunctional aspartokinase/homoserine dehydrogenase| (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 815 Score = 43.5 bits (101), Expect = 1e-04 Identities = 21/38 (55%), Positives = 26/38 (68%) Frame = -3 Query: 282 DNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILR 169 +N AF T Y+ PL++RG GAG VTA G+F DILR Sbjct: 774 ENALAFYTRYYQPIPLLLRGYGAGNAVTAAGIFADILR 811
>AK1H_ECOLI (P00561) Bifunctional aspartokinase/homoserine dehydrogenase I| (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4); Homoserine dehydrogenase I (EC 1.1.1.3)] Length = 820 Score = 43.5 bits (101), Expect = 1e-04 Identities = 21/42 (50%), Positives = 29/42 (69%) Frame = -3 Query: 282 DNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSY 157 +N AF + Y+ PL++RG GAG +VTA GVF D+LR S+ Sbjct: 775 ENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSW 816
>AKH_BUCAP (Q8K9U9) Bifunctional aspartokinase/homoserine dehydrogenase| (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 814 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/39 (51%), Positives = 27/39 (69%) Frame = -3 Query: 282 DNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRL 166 +N F T Y+ PL++RG GAG +VTA GVF D+LR+ Sbjct: 774 ENALTFYTNYYQPIPLVLRGYGAGNDVTASGVFSDLLRI 812
>AKH_BUCAI (P57290) Bifunctional aspartokinase/homoserine dehydrogenase| (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 816 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/38 (55%), Positives = 26/38 (68%) Frame = -3 Query: 282 DNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILR 169 +N AF T Y+ PL++RG GAG VTA GVF D+LR Sbjct: 776 ENALAFYTNYYQPIPLVLRGYGAGNNVTASGVFSDLLR 813
>AKH_BUCBP (Q89AR4) Bifunctional aspartokinase/homoserine dehydrogenase| (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 816 Score = 42.7 bits (99), Expect = 2e-04 Identities = 19/39 (48%), Positives = 27/39 (69%) Frame = -3 Query: 282 DNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRL 166 +N AF + Y+ PL++RG GAG VTA G+F D+LR+ Sbjct: 776 ENALAFYSKYYQPIPLVLRGYGAGNNVTASGIFSDVLRI 814
>VL2_HPV69 (Q9JH45) Minor capsid protein L2| Length = 467 Score = 31.6 bits (70), Expect = 0.53 Identities = 24/75 (32%), Positives = 34/75 (45%) Frame = +2 Query: 68 NIGQEGYKLPAIYLKKSINTVTDIYEGAPR*DPSRRMSQKTPPAVTSAPAPGPRTIRGCS 247 +I Q G L I+ S T YE P + S + P ++S P PG R + Sbjct: 169 DIPQSGEALGHIFTSTS-TAGTHSYEEIPMEVFASNTSSGSKP-ISSTPIPGIRRVAAPR 226 Query: 248 LYLKVVKAVMLSDPN 292 LY K + V ++DPN Sbjct: 227 LYSKAYQQVKVTDPN 241
>RPOA_EAVBU (P19811) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1 papain-like cysteine proteinase (EC 3.4.22.-) (PCP); Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP); Nonstructural protein Length = 3175 Score = 31.2 bits (69), Expect = 0.70 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +2 Query: 92 LPAIYLKKSINTVTDIYEGAPR*DPSRRMSQKTPPAVTSAPAPGPRT-IRGCSLYLKVVK 268 +PA ++ S N+ D+ + AP + ++ P T AP P PRT ++G S + Sbjct: 396 VPAPRVRPSANSSGDVKDPAPVPPVPKPRTKLATPNPTQAPIPAPRTRLQGASTQEPLAS 455 Query: 269 AVMLSD 286 A + SD Sbjct: 456 AGVASD 461
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 29.6 bits (65), Expect = 2.0 Identities = 22/56 (39%), Positives = 26/56 (46%) Frame = +2 Query: 86 YKLPAIYLKKSINTVTDIYEGAPR*DPSRRMSQKTPPAVTSAPAPGPRTIRGCSLY 253 Y A L S+ V Y G PR D M+ K PP V APAP + CS+Y Sbjct: 55 YSHVAAVLGGSVLLVAGGYSGRPRGD---LMAYKVPPFVFQAPAPDYH-LDYCSMY 106
>MPRF_STAAW (Q8NWU7) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -3 Query: 297 QLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLG 151 Q F ++N TAF RYK L+V G G E + YLG Sbjct: 548 QFFTNENKTAFLMYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLG 596
>MPRF_STAAU (Q9AIV3) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -3 Query: 297 QLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLG 151 Q F ++N TAF RYK L+V G G E + YLG Sbjct: 548 QFFTNENKTAFLMYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLG 596
>MPRF_STAAS (Q6G9J9) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -3 Query: 297 QLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLG 151 Q F ++N TAF RYK L+V G G E + YLG Sbjct: 548 QFFTNENKTAFLMYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLG 596
>MPRF_STAAN (Q7A5R9) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -3 Query: 297 QLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLG 151 Q F ++N TAF RYK L+V G G E + YLG Sbjct: 548 QFFTNENKTAFLMYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLG 596
>MPRF_STAAM (Q99UB9) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -3 Query: 297 QLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLG 151 Q F ++N TAF RYK L+V G G E + YLG Sbjct: 548 QFFTNENKTAFLMYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLG 596
>MPRF_STAAC (Q5HG59) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -3 Query: 297 QLFGSDNITAFTTLRYKEQPLIVRGPGAGAEVTAGGVFCDILRLGSYLG 151 Q F ++N TAF RYK L+V G G E + YLG Sbjct: 548 QFFTNENKTAFLMYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLG 596
>VL2_HPV28 (P50799) Minor capsid protein L2| Length = 473 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 200 VTSAPAPGPRTIRGCSLYLKVVKAVMLSDP 289 ++S P PG I G LY K V V ++DP Sbjct: 211 ISSTPVPGVSRIAGPRLYAKAVTQVKVTDP 240
>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1| precursor (Down syndrome cell adhesion molecule 2) Length = 2053 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 164 PSRRMSQKTPPAVTSAPAPGP 226 P R ++ PPA T+ PAPGP Sbjct: 1970 PQRTLAMPAPPAGTAPPAPGP 1990
>VL2_HPV03 (P36744) Minor capsid protein L2| Length = 473 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 200 VTSAPAPGPRTIRGCSLYLKVVKAVMLSDP 289 ++S P PG I G LY K V V ++DP Sbjct: 211 ISSTPVPGVSRIAGPRLYSKAVTQVKVTDP 240
>TRPE_YEAST (P00899) Anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 506 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +2 Query: 53 KTTKSNIGQEGYKLPAIYLKKSINTVTDIYEGAPR*DPSRRMSQKT 190 +T +SN+G+EGY+ LKK I DI +G PS+R+++ T Sbjct: 221 QTFESNVGKEGYENHVSTLKKHIKK-GDIIQGV----PSQRVARPT 261
>ENV_MLVAV (P03386) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP70; Spike protein p15E; R protein] Length = 669 Score = 25.4 bits (54), Expect(2) = 3.5 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = +1 Query: 70 YWARRVQVAGHLPKKIYQYSHRYL*GGPEV--GPQP 171 +W R+ V+GH P I+ + GP V GP P Sbjct: 237 WWGLRLYVSGHDPGLIFGIRLKITDSGPRVPIGPNP 272 Score = 21.9 bits (45), Expect(2) = 3.5 Identities = 9/24 (37%), Positives = 12/24 (50%) Frame = +2 Query: 164 PSRRMSQKTPPAVTSAPAPGPRTI 235 PSR ++PP S P P T+ Sbjct: 280 PSRPRPTRSPPPSNSTPTETPLTL 303
>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 932 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 161 DPSRRMSQKTPPAVTSAPAPGPRT 232 D + +QK+P A +AP PGPRT Sbjct: 682 DLAAAAAQKSPSAEAAAPPPGPRT 705
>RCOR2_XENLA (Q6NRZ0) REST corepressor 2| Length = 503 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/62 (25%), Positives = 23/62 (37%) Frame = +2 Query: 44 SKQKTTKSNIGQEGYKLPAIYLKKSINTVTDIYEGAPR*DPSRRMSQKTPPAVTSAPAPG 223 S Q + LP L+ +I ++ P P R + + PP V AP Sbjct: 427 SSQPAPPAAAAAASLSLPPPLLRPAIPCAPTLHRQPPPLQPGRLLQPRPPPLVRPAPRQS 486 Query: 224 PR 229 PR Sbjct: 487 PR 488
>AFG1_YEAST (P32317) Protein AFG1| Length = 509 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 10 NKTFYLLSSQVFKTKDYQVQYWARRVQVAGHLPKKIYQYSHRYL*GGPEVGPQPQDVAKN 189 +KTFY DY + W R +V P ++ Q++ + L G P +AKN Sbjct: 334 HKTFY----------DYPLTIWGREFKVPKCTPPRVAQFTFKQLCGEPLAAGDYLTLAKN 383
>TRPE_SCHPO (O94582) Probable anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 489 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = +2 Query: 62 KSNIGQEGYKLPAIYLKKSINTVTDIYEGAPR*DPSRRMSQKT 190 KSN+G++GYK LK+ I DI++ PS+R++++T Sbjct: 207 KSNVGEDGYKAFVSNLKEHIFN-GDIFQAV----PSQRIARRT 244
>VL2_HPV29 (P50800) Minor capsid protein L2| Length = 473 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 200 VTSAPAPGPRTIRGCSLYLKVVKAVMLSDP 289 ++S P PG + G LY K + V +SDP Sbjct: 211 ISSTPVPGVSRVAGPRLYGKALTQVRVSDP 240
>VL2_HPV32 (P36757) Minor capsid protein L2| Length = 476 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 176 MSQKTPPAVTSAPAPGPRTIRGCSLYLKVVK 268 +S T VTS P PGPR LY +V + Sbjct: 206 VSTDTSNTVTSTPIPGPRPTMRLGLYTRVTQ 236
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1 Query: 145 GGPEVGPQPQDVAKNPSGSH-LRARAWPAHD 234 GGP GP+ + + P+ H R +A PAH+ Sbjct: 960 GGPRAGPREAESGEEPARRHRARHKAQPAHE 990 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,762,095 Number of Sequences: 219361 Number of extensions: 919618 Number of successful extensions: 3119 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2973 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3104 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
