ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl04a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
3dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
4dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 94 5e-16
5gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
8dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
10gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
13gb|AC008571.6| Homo sapiens chromosome 5 clone CTC-550M4, comple... 46 0.096
14emb|BX323449.13| Zebrafish DNA sequence from clone DKEYP-115E12 ... 44 0.38
15gb|AC161363.7| Mus musculus BAC clone RP24-554L15 from chromosom... 42 1.5
16gb|AC010212.10| Drosophila melanogaster clone BACR32D05, complet... 42 1.5
17gb|AC138263.8| Mus musculus chromosome 6, clone RP23-291O5, comp... 42 1.5
18emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on ch... 42 1.5
19gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, comp... 42 1.5
20gb|AC022390.9| Homo sapiens chromosome 10 clone RP11-131N11, com... 42 1.5
21gb|AC092376.3| Homo sapiens chromosome 16 clone RP11-679B19, com... 42 1.5
22gb|AE003675.4| Drosophila melanogaster chromosome 3R, section 9 ... 42 1.5
23gb|AF087677.1|AF087677 Neisseria flavescens penicillin-binding p... 42 1.5
24gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, compl... 40 5.9
25gb|AC183804.3| Pan troglodytes BAC clone CH251-67P16 from chromo... 40 5.9
26gb|AC148022.2| Homo sapiens BAC clone RP11-1383G16 from 2, compl... 40 5.9
27gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, co... 40 5.9
28gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 5.9
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
30emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chro... 40 5.9
31emb|AL031943.11|HS223B1 Human DNA sequence from clone RP1-223B1 ... 40 5.9
32gb|AC159540.1| Homo sapiens BAC clone RP11-474M15 from 2, comple... 40 5.9
33emb|AL766849.1|SAG766849 Streptococcus agalactiae NEM316 complet... 40 5.9
34gb|AY083632.1| Lecanopteris crustacea trnL-trnF intergenic space... 40 5.9
35gb|AY083629.1| Lecanopteris lomarioides trnL-trnF intergenic spa... 40 5.9
36emb|CR932963.2| Medicago truncatula chromosome 5 clone mth2-115p... 40 5.9
37emb|AL672013.9| Mouse DNA sequence from clone RP23-32G8 on chrom... 40 5.9
38emb|AL928931.15| Mouse DNA sequence from clone RP23-419H3 on chr... 40 5.9
39emb|AL831890.1|HSM803215 Homo sapiens genomic DNA; cDNA DKFZp547... 40 5.9
40gb|DQ164508.1| Microsorum punctatum trnL-trnF intergenic spacer,... 40 5.9
41emb|BX470139.9| Zebrafish DNA sequence from clone CH211-141O12 i... 40 5.9
42dbj|AK149044.1| Mus musculus 2 days neonate sympathetic ganglion... 40 5.9
43gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complet... 40 5.9
44emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 i... 40 5.9
45gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genom... 40 5.9
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
47gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, co... 40 5.9
48gb|AC092683.3| Homo sapiens BAC clone RP11-734K23 from 2, comple... 40 5.9
49gb|AC148032.2| Homo sapiens BAC clone RP13-809J14 from 2, comple... 40 5.9
50gb|AC160020.1| Homo sapiens BAC clone RP11-540L21 from 2, comple... 40 5.9
51gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2,... 40 5.9
52dbj|AB013390.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.9
53emb|AJ278907.1|BTA278907 Bos taurus partial ed1 gene for ectodys... 40 5.9
54dbj|AB028896.2| Streptococcus agalactiae type-specific capsular ... 40 5.9
55emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 i... 40 5.9
56gb|AC156159.1| Homo sapiens chromosome 2 clone WI2-3194A1, compl... 40 5.9 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                           
Query: 265     cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
               ||||||| ||||| |||||||||||||| ||||| |||||||||||| ||| ||||||  
Sbjct: 3246013 cattagctaggtc-ttttgttctcctgtcggcaattgaatctgtacatgctattgtatag 3245955

                                          
Query: 325     gttagtggcttgagagattcaagtgcc 351
               ||||||| |||||||||||||||||||
Sbjct: 3245954 gttagtgacttgagagattcaagtgcc 3245928
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                            
Query: 265      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
                ||||||| ||||| ||||||| |||||| ||||| |||||||||||| ||||||||||  
Sbjct: 27859925 cattagctaggtc-ttttgttgtcctgtcggcaattgaatctgtacatgctgttgtatag 27859983

                                           
Query: 325      gttagtggcttgagagattcaagtgcc 351
                ||||||| |||||||||||||||||||
Sbjct: 27859984 gttagtgacttgagagattcaagtgcc 27860010
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>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1144G04
          Length = 194459

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                         
Query: 265   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
             ||||||| ||||| ||||||| |||||| ||||| |||||||||||| ||||||||||  
Sbjct: 46606 cattagctaggtc-ttttgttgtcctgtcggcaattgaatctgtacatgctgttgtatag 46664

                                        
Query: 325   gttagtggcttgagagattcaagtgcc 351
             ||||||| |||||||||||||||||||
Sbjct: 46665 gttagtgacttgagagattcaagtgcc 46691
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                         
Query: 265   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
             ||||||| ||||| |||||||||||||| ||||| |||||||||||| ||| ||||||  
Sbjct: 55706 cattagctaggtc-ttttgttctcctgtcggcaattgaatctgtacatgctattgtatag 55648

                                        
Query: 325   gttagtggcttgagagattcaagtgcc 351
             ||||||| |||||||||||||||||||
Sbjct: 55647 gttagtgacttgagagattcaagtgcc 55621
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>gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0024E08, complete sequence
          Length = 131946

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 76/87 (87%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                         
Query: 265   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
             ||||||| ||||| ||||||| ||||||  |||| |||||||||||| ||||||||||  
Sbjct: 88599 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtatag 88541

                                        
Query: 325   gttagtggcttgagagattcaagtgcc 351
             ||||||| ||| |||||||||||||||
Sbjct: 88540 gttagtgacttaagagattcaagtgcc 88514
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 76/87 (87%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                            
Query: 265      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
                ||||||| ||||| ||||||| ||||||  |||| |||||||||||| ||||||||||  
Sbjct: 26065032 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtatag 26064974

                                           
Query: 325      gttagtggcttgagagattcaagtgcc 351
                ||||||| ||| |||||||||||||||
Sbjct: 26064973 gttagtgacttaagagattcaagtgcc 26064947



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                            
Query: 265      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
                ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||  
Sbjct: 21570472 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 21570530

                               
Query: 325      gttagtggcttgaga 339
                |||| || |||||||
Sbjct: 21570531 gttattgacttgaga 21570545
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 76/87 (87%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                            
Query: 265      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
                ||||||| ||||| ||||||| || ||| ||||| |||||||||||| ||||||||||  
Sbjct: 10641450 cattagctaggtc-ttttgttgtcttgtcggcaattgaatctgtacatgctgttgtatag 10641392

                                           
Query: 325      gttagtggcttgagagattcaagtgcc 351
                |||| || |||||||||||||||||||
Sbjct: 10641391 gttattgacttgagagattcaagtgcc 10641365
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>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0057I13
          Length = 156330

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 76/87 (87%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                         
Query: 265   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
             ||||||| ||||| ||||||| || ||| ||||| |||||||||||| ||||||||||  
Sbjct: 93762 cattagctaggtc-ttttgttgtcttgtcggcaattgaatctgtacatgctgttgtatag 93704

                                        
Query: 325   gttagtggcttgagagattcaagtgcc 351
             |||| || |||||||||||||||||||
Sbjct: 93703 gttattgacttgagagattcaagtgcc 93677
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 76/87 (87%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                            
Query: 265      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
                ||||||| ||||| ||||||| ||||||  |||| |||||||||||| ||||||||||  
Sbjct: 26383728 cattagctaggtc-ttttgttgtcctgtcagcaattgaatctgtacatgctgttgtatag 26383670

                                           
Query: 325      gttagtggcttgagagattcaagtgcc 351
                ||||||| ||| |||||||||||||||
Sbjct: 26383669 gttagtgacttaagagattcaagtgcc 26383643



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                            
Query: 265      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
                ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||  
Sbjct: 21880671 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 21880729

                               
Query: 325      gttagtggcttgaga 339
                |||| || |||||||
Sbjct: 21880730 gttattgacttgaga 21880744
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>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             B1356F10, complete sequence
          Length = 170681

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                         
Query: 265   cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
             ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||  
Sbjct: 93991 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 94049

                            
Query: 325   gttagtggcttgaga 339
             |||| || |||||||
Sbjct: 94050 gttattgacttgaga 94064
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                            
Query: 265      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
                ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||  
Sbjct: 21378751 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 21378693

                               
Query: 325      gttagtggcttgaga 339
                |||| || |||||||
Sbjct: 21378692 gttattgacttgaga 21378678
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                            
Query: 265      cattagccaggtccttttgttctcctgttggcaactgaatctgtacacgctgttgtatgt 324
                ||||||| ||||| |||||||||| ||| ||||| |||||||||||| ||||||||||  
Sbjct: 21304970 cattagctaggtc-ttttgttctcttgtcggcaattgaatctgtacatgctgttgtatag 21304912

                               
Query: 325      gttagtggcttgaga 339
                |||| || |||||||
Sbjct: 21304911 gttattgacttgaga 21304897
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>gb|AC008571.6| Homo sapiens chromosome 5 clone CTC-550M4, complete sequence
          Length = 214267

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 329   gtggcttgagagattcaagtgcc 351
             |||||||||||||||||||||||
Sbjct: 24025 gtggcttgagagattcaagtgcc 24047
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>emb|BX323449.13| Zebrafish DNA sequence from clone DKEYP-115E12 in linkage group 14,
              complete sequence
          Length = 179115

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 103    acaacatgtcacacgagttaat 124
              ||||||||||||||||||||||
Sbjct: 113006 acaacatgtcacacgagttaat 113027
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>gb|AC161363.7| Mus musculus BAC clone RP24-554L15 from chromosome 6, complete sequence
          Length = 209193

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   aaaagaaagaatattgctgct 179
             |||||||||||||||||||||
Sbjct: 68723 aaaagaaagaatattgctgct 68703
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>gb|AC010212.10| Drosophila melanogaster clone BACR32D05, complete sequence
          Length = 161579

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 393   atacaactccagtgaacaatg 413
             |||||||||||||||||||||
Sbjct: 91123 atacaactccagtgaacaatg 91143
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>gb|AC138263.8| Mus musculus chromosome 6, clone RP23-291O5, complete sequence
          Length = 206016

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 159  aaaagaaagaatattgctgct 179
            |||||||||||||||||||||
Sbjct: 4010 aaaagaaagaatattgctgct 3990
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>emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on chromosome X Contains a
             tubulin beta polypeptide pseudogene, complete sequence
          Length = 197611

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   atttacagagctgttacatca 143
             |||||||||||||||||||||
Sbjct: 80852 atttacagagctgttacatca 80832
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>gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, complete sequence
          Length = 167820

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   agagctgttacatcacttggc 149
             |||||||||||||||||||||
Sbjct: 62982 agagctgttacatcacttggc 63002
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>gb|AC022390.9| Homo sapiens chromosome 10 clone RP11-131N11, complete sequence
          Length = 161223

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 330   tggcttgagagattcaagtgc 350
             |||||||||||||||||||||
Sbjct: 12759 tggcttgagagattcaagtgc 12739
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>gb|AC092376.3| Homo sapiens chromosome 16 clone RP11-679B19, complete sequence
          Length = 168083

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    ccaacacagtggggagtggct 77
             |||||||||||||||||||||
Sbjct: 46856 ccaacacagtggggagtggct 46876
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>gb|AE003675.4| Drosophila melanogaster chromosome 3R, section 9 of 118 of the complete
              sequence
          Length = 145958

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 393    atacaactccagtgaacaatg 413
              |||||||||||||||||||||
Sbjct: 129592 atacaactccagtgaacaatg 129612
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>gb|AF087677.1|AF087677 Neisseria flavescens penicillin-binding protein 1 (ponA) gene,
            complete cds
          Length = 3247

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 292  ttggcaactgaatctgtacac 312
            |||||||||||||||||||||
Sbjct: 1269 ttggcaactgaatctgtacac 1249
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>gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, complete sequence
          Length = 245404

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     atccaacacagtggggagtg 74
              ||||||||||||||||||||
Sbjct: 191667 atccaacacagtggggagtg 191686
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>gb|AC183804.3| Pan troglodytes BAC clone CH251-67P16 from chromosome 2, complete
            sequence
          Length = 169437

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 411  atgcttttgtacaggagctgtgct 434
            |||||||||||||| |||||||||
Sbjct: 3797 atgcttttgtacagcagctgtgct 3774
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>gb|AC148022.2| Homo sapiens BAC clone RP11-1383G16 from 2, complete sequence
          Length = 181750

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 411   atgcttttgtacaggagctgtgct 434
             |||||||||||||| |||||||||
Sbjct: 80271 atgcttttgtacagcagctgtgct 80294
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>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence
          Length = 206675

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  cagtgaacaatgcttttgta 421
            ||||||||||||||||||||
Sbjct: 5897 cagtgaacaatgcttttgta 5878
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     ttgacaaaagaaagaatatt 173
               ||||||||||||||||||||
Sbjct: 1215220 ttgacaaaagaaagaatatt 1215239
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       acagctctacaacatgtcac 114
                ||||||||||||||||||||
Sbjct: 16277011 acagctctacaacatgtcac 16276992
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>emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 142067

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 328    agtggcttgagagattcaagtgcc 351
              |||| |||||||||||||||||||
Sbjct: 118446 agtgacttgagagattcaagtgcc 118423
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>emb|AL031943.11|HS223B1 Human DNA sequence from clone RP1-223B1 on chromosome 6p24.1-25.3
             Contains the 3' end of a putative novel gene, complete
             sequence
          Length = 126281

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   agagatataggcaaaatcca 386
             ||||||||||||||||||||
Sbjct: 74878 agagatataggcaaaatcca 74859
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>gb|AC159540.1| Homo sapiens BAC clone RP11-474M15 from 2, complete sequence
          Length = 173191

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 411   atgcttttgtacaggagctgtgct 434
             |||||||||||||| |||||||||
Sbjct: 44469 atgcttttgtacagcagctgtgct 44446
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>emb|AL766849.1|SAG766849 Streptococcus agalactiae NEM316 complete genome, segment 7
          Length = 128050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   ttgacaaaagaaagaatatt 173
             ||||||||||||||||||||
Sbjct: 83113 ttgacaaaagaaagaatatt 83132
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>gb|AY083632.1| Lecanopteris crustacea trnL-trnF intergenic spacer, chloroplast
           sequence
          Length = 211

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 ccaattcatgtacggaaaaa 226
           ||||||||||||||||||||
Sbjct: 189 ccaattcatgtacggaaaaa 170
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>gb|AY083629.1| Lecanopteris lomarioides trnL-trnF intergenic spacer, chloroplast
           sequence
          Length = 172

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 ccaattcatgtacggaaaaa 226
           ||||||||||||||||||||
Sbjct: 172 ccaattcatgtacggaaaaa 153
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>emb|CR932963.2| Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE
          Length = 133910

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   tgtatgtgttagtggcttga 337
             ||||||||||||||||||||
Sbjct: 72061 tgtatgtgttagtggcttga 72042



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   tgtatgtgttagtggcttga 337
             ||||||||||||||||||||
Sbjct: 71985 tgtatgtgttagtggcttga 71966
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>emb|AL672013.9| Mouse DNA sequence from clone RP23-32G8 on chromosome 11 Contains the
             3' end of the Ebf1 gene for early B-cell factor 1 and a
             novel gene, complete sequence
          Length = 207905

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   gtgttagtggcttgagagat 342
             ||||||||||||||||||||
Sbjct: 69029 gtgttagtggcttgagagat 69048
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>emb|AL928931.15| Mouse DNA sequence from clone RP23-419H3 on chromosome 2, complete
             sequence
          Length = 148740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   aatattgctgctcaaatgaa 187
             ||||||||||||||||||||
Sbjct: 81776 aatattgctgctcaaatgaa 81795
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>emb|AL831890.1|HSM803215 Homo sapiens genomic DNA; cDNA DKFZp547D108 (from clone
           DKFZp547D108)
          Length = 1886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 411 atgcttttgtacaggagctgtgct 434
           |||||||||||||| |||||||||
Sbjct: 62  atgcttttgtacagcagctgtgct 39
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>gb|DQ164508.1| Microsorum punctatum trnL-trnF intergenic spacer, partial sequence;
           chloroplast
          Length = 345

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 ccaattcatgtacggaaaaa 226
           ||||||||||||||||||||
Sbjct: 280 ccaattcatgtacggaaaaa 261
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>emb|BX470139.9| Zebrafish DNA sequence from clone CH211-141O12 in linkage group 5,
              complete sequence
          Length = 185997

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      acgaaaatatgttgcatttt 21
              ||||||||||||||||||||
Sbjct: 113152 acgaaaatatgttgcatttt 113171
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>dbj|AK149044.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
          full-length enriched library, clone:7120478L10
          product:hypothetical protein, full insert sequence
          Length = 2474

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 55 atccaacacagtggggagtg 74
          ||||||||||||||||||||
Sbjct: 73 atccaacacagtggggagtg 54
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>gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complete sequence
          Length = 177270

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 328   agtggcttgagagattcaagtgcc 351
             |||||||||||||| |||||||||
Sbjct: 24604 agtggcttgagagagtcaagtgcc 24627
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>emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 in linkage group 10,
              complete sequence
          Length = 132400

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 284    ttctcctgttggcaactgaatctg 307
              |||||| |||||||||||||||||
Sbjct: 123590 ttctcccgttggcaactgaatctg 123613
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>gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genomic sequence, complete
             sequence
          Length = 135585

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    acagctctacaacatgtcac 114
             ||||||||||||||||||||
Sbjct: 75027 acagctctacaacatgtcac 75008
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       acagctctacaacatgtcac 114
                ||||||||||||||||||||
Sbjct: 16270644 acagctctacaacatgtcac 16270625
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>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence
          Length = 128950

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    cagtgaacaatgcttttgta 421
              ||||||||||||||||||||
Sbjct: 122550 cagtgaacaatgcttttgta 122531
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>gb|AC092683.3| Homo sapiens BAC clone RP11-734K23 from 2, complete sequence
          Length = 174105

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 411    atgcttttgtacaggagctgtgct 434
              |||||||||||||| |||||||||
Sbjct: 167099 atgcttttgtacagcagctgtgct 167122



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 411  atgcttttgtacaggagctgtgct 434
            |||||||||||||| |||||||||
Sbjct: 4020 atgcttttgtacagcagctgtgct 3997
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>gb|AC148032.2| Homo sapiens BAC clone RP13-809J14 from 2, complete sequence
          Length = 155256

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 411   atgcttttgtacaggagctgtgct 434
             |||||||||||||| |||||||||
Sbjct: 87524 atgcttttgtacagcagctgtgct 87501
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>gb|AC160020.1| Homo sapiens BAC clone RP11-540L21 from 2, complete sequence
          Length = 202084

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 411    atgcttttgtacaggagctgtgct 434
              |||||||||||||| |||||||||
Sbjct: 188649 atgcttttgtacagcagctgtgct 188626
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>gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2, complete sequence
          Length = 187883

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 411    atgcttttgtacaggagctgtgct 434
              |||||||||||||| |||||||||
Sbjct: 183466 atgcttttgtacagcagctgtgct 183489
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>dbj|AB013390.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9
          Length = 51860

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     aaaatatgttgcatttttcgtaat 28
             |||||||||||| |||||||||||
Sbjct: 31388 aaaatatgttgcgtttttcgtaat 31411
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>emb|AJ278907.1|BTA278907 Bos taurus partial ed1 gene for ectodysplasin A, exons 4-9
          Length = 37331

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   ataggcaaaatccagacact 392
             ||||||||||||||||||||
Sbjct: 30196 ataggcaaaatccagacact 30177
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>dbj|AB028896.2| Streptococcus agalactiae type-specific capsular polysaccharide
             biosynthesis gene region (cpsIaS to bcat gene), complete
             and partial cds
          Length = 25021

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   ttgacaaaagaaagaatatt 173
             ||||||||||||||||||||
Sbjct: 20226 ttgacaaaagaaagaatatt 20207
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>emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 in linkage group 20,
             complete sequence
          Length = 98841

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 284   ttctcctgttggcaactgaatctg 307
             |||||| |||||||||||||||||
Sbjct: 43670 ttctcccgttggcaactgaatctg 43647
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>gb|AC156159.1| Homo sapiens chromosome 2 clone WI2-3194A1, complete sequence
          Length = 42440

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 411   atgcttttgtacaggagctgtgct 434
             |||||||||||||| |||||||||
Sbjct: 35555 atgcttttgtacagcagctgtgct 35532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,362,568
Number of Sequences: 3902068
Number of extensions: 4362568
Number of successful extensions: 80063
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79737
Number of HSP's gapped (non-prelim): 326
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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