>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = -1

Query: 392  ATEGIARCTFEDKVLMSDIVFMRAW 318
            A EG  R +FEDK+LMSDIVFMR W
Sbjct: 1077 APEGAFRASFEDKLLMSDIVFMRTW 1101

>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -1

Query: 383  GIARCTFEDKVLMSDIVFMRAWVCL-----CTVVPVR*STSQDALPTQDTSPHWHGWQQT 219
            G  R TFEDK+LMSDIVF+RAW  +     CT+V        + L T  T   W+G + T
Sbjct: 923  GHFRATFEDKILMSDIVFLRAWYPVQVRKFCTMV-------TNLLETDKT--EWNGMRLT 973

>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1|
          Length = 1183

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -1

Query: 386  EGIARCTFEDKVLMSDIVFMRAW 318
            EG  R  FEDK+LMSDIV +R+W
Sbjct: 984  EGHYRAAFEDKILMSDIVILRSW 1006

>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)|
          Length = 1947

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -3

Query: 276 PGRTAYPRHVTPLARLAADDS*TFSTD*LEMHVILLVTLAKEK 148
           P RT +P  V   A LAAD+S    TD  +   ++L  L KEK
Sbjct: 723 PNRTLHPDFVQRYALLAADESIIGKTDAKKGSALMLARLVKEK 765

>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            [Contains: Transforming protein Int-3; Notch 4
            extracellular truncation; Notch 4 intracellular domain]
          Length = 1964

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -2

Query: 265  CLPKTRHPTGTAGSRRLMNL*Y-----GLVGDACDIASHSRKRERCGN*G 131
            CL +  HP+GTA    L N  Y     G  G  C++     + + C N G
Sbjct: 1006 CLDRPCHPSGTAACHSLANAFYCQCLPGHTGQRCEVEMDLCQSQPCSNGG 1055

>DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 354

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 29  SLNFSTYDVSWSLMDDKIYISTEVYAYRLNMVSP 130
           S N STYD  W ++++K+Y   E    RL   SP
Sbjct: 254 SQNISTYDECWQVIEEKLYPELE---KRLERASP 284

>DPH1_NEUCR (Q7SC98) Diphthamide biosynthesis protein 1|
          Length = 459

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 249 RVLGRQCVLAGASSDGNDSAKTDPCSHEDNVTHKNFVLKCAPRNAFR 389
           R LGRQ   AG SS  + ++ + P     ++     +    PR A R
Sbjct: 35  RFLGRQSAAAGKSSSSSSNSTSQPAGANTSIEDSGAIQVAQPRRAPR 81

>TBX5_RAT (Q5I2P1) T-box transcription factor TBX5 (T-box protein 5)|
          Length = 517

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 273 LAGASSDGNDSAKTDPCSHEDNVTHKNFVLKCAPRNAFRS 392
           LAG ++ G+         H+ +VTH+  V +C P+   +S
Sbjct: 438 LAGMANHGSPQLGEGMFQHQTSVTHQPVVRQCGPQTGLQS 477

>PIG1_YEAST (Q06216) Serine/threonine-protein phosphatase 1 regulatory subunit|
           PIG1
          Length = 648

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +2

Query: 2   TKQNWPTVLSLNFSTYDVSWSLMDDKIYISTEVYAYRLNMVSPALVTTSFSFARVTSNIT 181
           T  NW  +  +N + Y+ S +   D+     ++ A +LN++S  L+ T+F F R T   T
Sbjct: 244 TLNNWADIHYIN-AHYNKSVTPHVDEFKFIIDISALKLNLISKNLIYTNF-FERKT---T 298

Query: 182 CISN 193
           C+ N
Sbjct: 299 CLLN 302

>RGMB_MOUSE (Q7TQ33) RGM domain family member B precursor|
          Length = 436

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +1

Query: 19  NCSVSQLFNIRCKLVTHG*QNLHKHGGIRLSVKHGVTGPSYHIFLFCESD*QYHM----- 183
           NCS     +     VTH   N H HGG+R   +HG        +LFC      H+     
Sbjct: 123 NCSKDGPTSSTNPEVTHDPCNYHSHGGVR---EHGGGDQRPPNYLFCGLFGDPHLRTFKD 179

Query: 184 HLQLIRTKGS 213
           H Q  + +G+
Sbjct: 180 HFQTCKVEGA 189

>BGAM_LEULA (Q02604) Beta-galactosidase small subunit (EC 3.2.1.23) (Lactase)|
          Length = 319

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -2

Query: 373 GAHLRTKFL*VTLSSCEHGS-----VFALSFPSDEAPARTHCLPKT 251
           G H++T+ + VT S+ ++ +      F+L+F   +AP    CLP T
Sbjct: 214 GMHMQTEQVTVTRSTTQNNADHDNTPFSLTFSQTDAPFAFSCLPYT 259

>OPGH_SHEON (Q8EF78) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 727

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 184 HLQLIRTKGS*VVCCQPCQWGDVSWVGSASWLVLHLTGTTVQRQTH 321
           H +++ TKG   V       G ++++ S  WL+L LTG  +  Q H
Sbjct: 387 HSRILPTKGLHWVSRLHLMTGIMAYLSSPFWLLLILTGLMLALQAH 432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,455,038
Number of Sequences: 219361
Number of extensions: 1135147
Number of successful extensions: 2520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2519
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)