ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 98 3e-17
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 98 3e-17
4dbj|AK101050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
5gb|AC137825.26| Medicago truncatula clone mth2-23j1, complete se... 66 1e-07
6dbj|AP004949.1| Lotus japonicus genomic DNA, chromosome 1, clone... 66 1e-07
7dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 54 4e-04
8ref|XM_658846.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.4
9gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, comple... 42 1.4
10gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17... 42 1.4
11gb|AY115845.1| Medicago truncatula auxin influx carrier protein ... 40 5.4
12dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds 40 5.4
13emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in... 40 5.4
14gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, comp... 40 5.4
15gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 5.4
16gb|AC105054.6| Homo sapiens BAC clone RP11-722I12 from 2, comple... 40 5.4
17gb|AC156794.3| Mus musculus BAC clone RP24-149L24 from chromosom... 40 5.4
18gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A1... 40 5.4
19gb|AC174799.2| Mus musculus BAC clone CH25-502A9 from chromosome... 40 5.4
20gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 5.4 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                            
Query: 315      gacccatgctcgcatgaagacaatgtcactcataagaactttgtcctcaaatgtgcacct 374
                ||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 12279628 gacccatgcacgcatgaagacaatgtcactcataagaattctgtcttcaaatgtgcacct 12279569

                                                 
Query: 375      cgcaatgccttccgtagcttccccttttctcct 407
                 ||||| || ||  ||  |||||||||||||||
Sbjct: 12279568 tgcaatcccgtctatactttccccttttctcct 12279536
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                            
Query: 315      gacccatgctcgcatgaagacaatgtcactcataagaactttgtcctcaaatgtgcacct 374
                ||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 12276391 gacccatgcacgcatgaagacaatgtcactcataagaattctgtcttcaaatgtgcacct 12276332

                                                 
Query: 375      cgcaatgccttccgtagcttccccttttctcct 407
                 ||||| || ||  ||  |||||||||||||||
Sbjct: 12276331 tgcaatcccgtctatactttccccttttctcct 12276299
to top
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                         
Query: 315   gacccatgctcgcatgaagacaatgtcactcataagaactttgtcctcaaatgtgcacct 374
             ||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 49161 gacccatgcacgcatgaagacaatgtcactcataagaattctgtcttcaaatgtgcacct 49102

                                              
Query: 375   cgcaatgccttccgtagcttccccttttctcct 407
              ||||| || ||  ||  |||||||||||||||
Sbjct: 49101 tgcaatcccgtctatactttccccttttctcct 49069
to top
>dbj|AK101050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010C12, full
            insert sequence
          Length = 4093

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                        
Query: 315  gacccatgctcgcatgaagacaatgtcactcataagaactttgtcctcaaatgtgcacct 374
            ||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 3119 gacccatgcacgcatgaagacaatgtcactcataagaattctgtcttcaaatgtgcacct 3060

                                             
Query: 375  cgcaatgccttccgtagcttccccttttctcct 407
             ||||| || ||  ||  |||||||||||||||
Sbjct: 3059 tgcaatcccgtctatactttccccttttctcct 3027
to top
>gb|AC137825.26| Medicago truncatula clone mth2-23j1, complete sequence
          Length = 130938

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                          
Query: 322    gctcgcatgaagacaatgtcactcataagaactttgtcctcaaatgtgcacctcgcaatg 381
              ||||||| ||| |||||||||||||| |||| |||||| ||||| |||||||| ||||| 
Sbjct: 122118 gctcgcaggaaaacaatgtcactcatcagaattttgtcttcaaaagtgcacctagcaatt 122059

                   
Query: 382    ccttc 386
              |||||
Sbjct: 122058 ccttc 122054
to top
>dbj|AP004949.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45F11, TM0122,
             complete sequence
          Length = 90864

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                         
Query: 318   ccatgctcgcatgaagacaatgtcactcataagaactttgtcctcaaatgtgcacctcgc 377
             |||||| |||| ||| |||||||||||||| | || |||||||||||| |||||||| ||
Sbjct: 14903 ccatgcacgcaggaaaacaatgtcactcatcaaaattttgtcctcaaaggtgcacctagc 14962

                      
Query: 378   aatgccttc 386
             ||| |||||
Sbjct: 14963 aattccttc 14971
to top
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 330    gaagacaatgtcactcataagaactttgtcctcaaatgt 368
              |||||||||||||||||||||||  ||||| ||||||||
Sbjct: 730604 gaagacaatgtcactcataagaatcttgtcttcaaatgt 730566
to top
>ref|XM_658846.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6334.2), mRNA
          Length = 3540

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 318  ccatgctcgcatgaagacaatgtcactcataag 350
            |||||| |||| ||| |||||||||||||||||
Sbjct: 2994 ccatgcgcgcaggaatacaatgtcactcataag 2962
to top
>gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, complete sequence
          Length = 126582

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     aaacaaaattggccaactgtt 25
             |||||||||||||||||||||
Sbjct: 18542 aaacaaaattggccaactgtt 18522
to top
>gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17, complete sequence
          Length = 95855

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     aaacaaaattggccaactgtt 25
             |||||||||||||||||||||
Sbjct: 95382 aaacaaaattggccaactgtt 95362
to top
>gb|AY115845.1| Medicago truncatula auxin influx carrier protein (LAX5) gene,
            complete cds
          Length = 3948

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  agcaatatcacatgcatctc 189
            ||||||||||||||||||||
Sbjct: 1120 agcaatatcacatgcatctc 1139
to top
>dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds
          Length = 153079

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ttaccacatctttctctttt 157
             ||||||||||||||||||||
Sbjct: 72182 ttaccacatctttctctttt 72163
to top
>emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in linkage group 8,
             complete sequence
          Length = 197947

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    atgacaaaatctacataagc 91
             ||||||||||||||||||||
Sbjct: 74665 atgacaaaatctacataagc 74646
to top
>gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, complete sequence
          Length = 187174

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    tctgtctctcaacttttcaacata 48
             ||||||||||||||||| ||||||
Sbjct: 51265 tctgtctctcaacttttaaacata 51288
to top
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 346     ataagaactttgtcctcaaa 365
               ||||||||||||||||||||
Sbjct: 1701362 ataagaactttgtcctcaaa 1701343
to top
>gb|AC105054.6| Homo sapiens BAC clone RP11-722I12 from 2, complete sequence
          Length = 203061

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tgggtaggcagtgcgtcctg 275
             ||||||||||||||||||||
Sbjct: 55374 tgggtaggcagtgcgtcctg 55355
to top
>gb|AC156794.3| Mus musculus BAC clone RP24-149L24 from chromosome 9, complete sequence
          Length = 160212

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     caaaattggccaactgttctgtct 31
             |||||||| |||||||||||||||
Sbjct: 77078 caaaattgcccaactgttctgtct 77101
to top
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete
             sequence
          Length = 102078

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   actttgtcctcaaatgtgca 371
             ||||||||||||||||||||
Sbjct: 31913 actttgtcctcaaatgtgca 31894
to top
>gb|AC174799.2| Mus musculus BAC clone CH25-502A9 from chromosome 9, complete sequence
          Length = 112760

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     caaaattggccaactgttctgtct 31
             |||||||| |||||||||||||||
Sbjct: 86425 caaaattgcccaactgttctgtct 86448
to top
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 346     ataagaactttgtcctcaaa 365
               ||||||||||||||||||||
Sbjct: 2529035 ataagaactttgtcctcaaa 2529054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,874,522
Number of Sequences: 3902068
Number of extensions: 3874522
Number of successful extensions: 54769
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54692
Number of HSP's gapped (non-prelim): 73
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top