ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03h10 |
|---|---|
| Clone Library Name | barley_pub |
>SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor| Length = 445 Score = 31.2 bits (69), Expect = 0.61 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -3 Query: 407 PSSAPLTGVSPSATGPQMPENPPSGTPSKS 318 P+S P G+ P+ + P P+NP SG P ++ Sbjct: 125 PASPPRPGMPPTRSWPVNPQNPMSGPPGRA 154
>STK23_MOUSE (Q9Z0G2) Serine/threonine-protein kinase 23 (EC 2.7.11.1)| (Muscle-specific serine kinase 1) (MSSK-1) Length = 565 Score = 30.8 bits (68), Expect = 0.80 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -2 Query: 156 LHSCRTLSIAAHERLFWLIRSFVSTIHLPVCNSLARDGRHSV 31 +H C L + H+ L W+I+S + +P S+ R H + Sbjct: 157 VHVCMVLEVLGHQLLKWIIKSNYQGLPVPCVKSIVRQVLHGL 198
>STK23_HUMAN (Q9UPE1) Serine/threonine-protein kinase 23 (EC 2.7.11.1)| (Muscle-specific serine kinase 1) (MSSK-1) Length = 533 Score = 30.8 bits (68), Expect = 0.80 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -2 Query: 156 LHSCRTLSIAAHERLFWLIRSFVSTIHLPVCNSLARDGRHSV 31 +H C L + H+ L W+I+S + +P S+ R H + Sbjct: 158 VHVCMVLEVLGHQLLKWIIKSNYQGLPVPCVKSIVRQVLHGL 199
>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)| Length = 501 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -3 Query: 401 SAPLTGVSPSATGPQMPENPPSGTPSKSKSHAP 303 S PL P A GP MP PP P S + P Sbjct: 377 SGPLPPPPPGAGGPPMPPPPPPPPPPPSSGNGP 409
>EXON_HHV2 (P06489) Alkaline exonuclease (EC 3.1.11.-)| Length = 620 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -3 Query: 407 PSSAPLTGVSPSATGPQMPENPPSGTP 327 P AP SP A G P++PP G P Sbjct: 39 PRPAPPRPTSPGAPGSHWPQSPPRGQP 65
>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 633 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -3 Query: 407 PSSAPLTGVSPS-ATGPQMPENPPSGTPSKSKSHAP 303 P P T P+ A GP P+ PP TP ++K+ +P Sbjct: 429 PQKQPQTKTKPTQAAGPSSPQKPP--TPEETKAASP 462
>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)| Length = 279 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -3 Query: 407 PSSAPLTGVSPSATGPQMPENPPSGTPSKSKSHAP 303 PS P +PS T P P PPS +P + P Sbjct: 165 PSPTPTPSPTPSPTPPPSPTPPPSPSPLGDPMYFP 199 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = -3 Query: 407 PSSAPLTGVSPSATGPQMPENPPSGTPSKSKSHAP 303 PS P +PS T P PS TPS + S P Sbjct: 115 PSPTPTPSPTPSPTPTPSPTPTPSPTPSPTPSPTP 149
>PER_DROYA (Q24767) Period circadian protein| Length = 1208 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -2 Query: 264 ATAGDHGRGHVLGQQEFAGLWHCVGLTRLAR*DHILLHSCRTLS-IAAHERLFWLIRSFV 88 A AG RG L ++ F CV ++ D I+L++ +++ + + R WL RSF+ Sbjct: 228 AAAGTGQRGERLKEESFC----CV----ISMHDGIVLYTTPSITDVLGYPRDMWLGRSFI 279 Query: 87 STIHL 73 +HL Sbjct: 280 DFVHL 284
>SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing protein 6| Length = 883 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%) Frame = -3 Query: 407 PSSAPLTGVSPSATGPQMPEN------PPSGTPSKSKSHAP 303 P+S P +G S S++GP + PPSGT + SKS +P Sbjct: 694 PASLPSSG-SGSSSGPSSSKKLDPSKRPPSGTSATSKSTSP 733
>GTI1_SCHPO (O14367) Gluconate transport inducer 1| Length = 720 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -3 Query: 404 SSAPLTGVSPSATGPQMPENPPSGTPS 324 SS PL P+ T P +P++PPS +PS Sbjct: 194 SSLPLVSSKPTGT-PFVPKSPPSSSPS 219
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = -3 Query: 365 GPQMPENPPSGTPSKSKSHAP 303 GPQ P+ PP G P H P Sbjct: 654 GPQGPQGPPQGLPRPQDMHGP 674
>YFCA_ECOLI (P0AD30) Inner membrane protein yfcA| Length = 269 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 101 SAPLLVQFIYLCVIRSLEMVDILCIA*FVLLLP 3 S LLVQ++ V+R + + ++CI + LL+P Sbjct: 96 SGALLVQYVQADVLRQILPILVICIGLYFLLMP 128
>YFCA_ECOL6 (P0AD31) Inner membrane protein yfcA| Length = 269 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 101 SAPLLVQFIYLCVIRSLEMVDILCIA*FVLLLP 3 S LLVQ++ V+R + + ++CI + LL+P Sbjct: 96 SGALLVQYVQADVLRQILPILVICIGLYFLLMP 128
>YFCA_ECO57 (P0AD32) Inner membrane protein yfcA| Length = 269 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 101 SAPLLVQFIYLCVIRSLEMVDILCIA*FVLLLP 3 S LLVQ++ V+R + + ++CI + LL+P Sbjct: 96 SGALLVQYVQADVLRQILPILVICIGLYFLLMP 128
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -3 Query: 407 PSSA-PLTGVSPSATGPQMPENPPSGTPSKSKSHAP 303 PS A P+ SP GP M PPSG P S+ P Sbjct: 162 PSGARPIGFGSPPPMGPGMSMPPPSGMPGGPLSNGP 197
>SIX2_HUMAN (Q9NPC8) Homeobox protein SIX2 (Sine oculis homeobox homolog 2)| Length = 291 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/31 (45%), Positives = 14/31 (45%) Frame = -3 Query: 404 SSAPLTGVSPSATGPQMPENPPSGTPSKSKS 312 S PL G S G E PSGTP S S Sbjct: 197 SHNPLNGSGKSVLGSSEDEKTPSGTPDHSSS 227
>UBAX1_ARATH (Q7Y175) UBA and UBX domain-containing protein At4g15410| Length = 421 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -3 Query: 377 PSATGPQMPENPPSGTPSKSKSHAP 303 P+ TGP P + +G S S+SH+P Sbjct: 53 PNPTGPPPPSSTIAGAQSPSQSHSP 77
>SM41_HEMPU (Q26264) 41 kDa spicule matrix protein precursor (HSM41) (HPSMC)| Length = 407 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -3 Query: 395 PLTGVSPSATGPQMPENPPSGTPSKS 318 P G PS P P+NP SG P ++ Sbjct: 129 PRPGAPPSRAWPVNPQNPMSGPPGRA 154
>RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| (MHC class I regulatory element-binding protein H-2RIIBP) Length = 520 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 407 PSSAPLTGVSPSATGPQMPENPPSGTP 327 PSS P ++PSA P MP PP G+P Sbjct: 94 PSSPPGPPLTPSAPPPPMPP-PPLGSP 119
>RIMS2_RAT (Q9JIS1) Regulating synaptic membrane exocytosis protein 2| (Rab3-interacting molecule 2) (RIM 2) Length = 1555 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -3 Query: 407 PSSAPLTGVSPSATGPQMPENPPSGT 330 PSS P+TG G Q+P+ PP GT Sbjct: 1107 PSSTPVTG----RRGRQLPQLPPKGT 1128
>FTZF1_BOMMO (P49867) Nuclear hormone receptor FTZ-F1 (BmFTZ-F1)| Length = 534 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = -3 Query: 404 SSAPLTGVSPSATG--PQMPENPPSGTPSKSKSHAP 303 +S+P + P+ G PQ P+ PP T K ++H+P Sbjct: 231 TSSPESSPGPALLGAQPQPPQPPPPPTHDKWEAHSP 266
>ERN1_HUMAN (O75460) Serine/threonine-protein kinase/endoribonuclease IRE1| precursor (Inositol-requiring protein 1) (hIRE1p) (IRE1a) (Ire1-alpha) (Endoplasmic reticulum-to-nucleus signaling 1) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endo Length = 977 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -2 Query: 177 AR*DHILLHSCRTLSIAAHERLF 109 +R H+L H+ R + + +HERLF Sbjct: 935 SRFPHLLAHTYRAMELCSHERLF 957
>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)| (Ubiquitin thioesterase 51) (Ubiquitin-specific-processing protease 51) (Deubiquitinating enzyme 51) Length = 711 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +2 Query: 191 PTQCHKPANSCCPRTWPRP 247 P +CH ++ CPR PRP Sbjct: 88 PLRCHSSSSPVCPRRKPRP 106
>HYALP_CAVPO (P23613) Hyaluronidase PH-20 precursor (EC 3.2.1.35) (Hyal-PH20)| (Sperm surface protein PH-20) (Sperm adhesion molecule 1) Length = 529 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = -2 Query: 249 HGRGHVLGQQEFAGLWHCVGLTRLAR*DHILLHSCRTLSI 130 HG+ + QEF+ +HC T +A D + +H+ R++++ Sbjct: 418 HGKPSLEDLQEFSKNFHCSCYTNVACKDRLDVHNVRSVNV 457
>RARA_XENLA (P51126) Retinoic acid receptor alpha (RAR-alpha)| Length = 458 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 404 SSAPLTGVSPSATGPQMPENPPSGTPSKSKSHAP 303 S AP+T V+P + P + PS T S +H+P Sbjct: 428 SDAPVTPVAPGSCSPSLS---PSSTHSSPSTHSP 458 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,397,031 Number of Sequences: 219361 Number of extensions: 827458 Number of successful extensions: 3432 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3421 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
