>K125_TOBAC (O23826) 125 kDa kinesin-related protein|
          Length = 1006

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 32/51 (62%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
 Frame = -1

Query: 394  EVPSKGTIESLRAMPIESLMDEFRENHPYES--SKEPKPSVIPRLPLGTLN 248
            +VPSK TIESLRAMP+E L++EFREN+ +ES   KE KPS+IPR P   +N
Sbjct: 955  DVPSKVTIESLRAMPMEVLLEEFRENNSFESFQVKEVKPSLIPRSPFSQIN 1005

>K125_ARATH (P82266) Probable 125 kDa kinesin-related protein|
          Length = 1056

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 2/50 (4%)
 Frame = -1

Query: 394  EVPSKGTIESLRAMPIESLMDEFRENHPYES--SKEPKPSVIPRLPLGTL 251
            E+P+K TIESLRAMPIE+L++EFREN+ YES  +KE KP  + R PL  L
Sbjct: 959  EIPTKATIESLRAMPIETLVEEFRENNSYESFATKETKPQQLTRSPLSQL 1008

>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog|
           3)
          Length = 618

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 18/71 (25%)
 Frame = -1

Query: 172 CPCCARFYGM---LALIQCLLHSC*NVSICCGAAE---------------YSCKKFYDEC 47
           C C   FYG+   ++ + C    C N  +C G A+                +C+K  D C
Sbjct: 298 CTCPRGFYGLRCEVSGVTCADGPCFNGGLCVGGADPDSAYICHCPPGFQGSNCEKRVDRC 357

Query: 46  LLHSC*NVSIC 14
            L  C N  +C
Sbjct: 358 SLQPCRNGGLC 368

>PALA_SCHPO (Q09807) pH-response regulator protein palA/rim20|
          Length = 701

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/45 (28%), Positives = 31/45 (68%), Gaps = 6/45 (13%)
 Frame = +1

Query: 13  NKLIHSSRNAKDTRHKIFYKNIRRLHNKL------IHSSKNAKDT 129
           +++I+S +++++ + K FY ++ +LH ++      + +S+NAKDT
Sbjct: 447 DEIINSVKSSQNMKEKGFYSDVIKLHEEVSLLKVNVENSQNAKDT 491

>SCD1_SCHPO (P40995) Rho guanine nucleotide exchange factor scd1|
          Length = 872

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 394 EVPSKGTIESLRAMP-IESLMDEFRENHPYESSKEPKPSVIPRLPLGTLN 248
           E+    T   +RA+  IE L+ ++  ++  +SS  P PS    +P GTLN
Sbjct: 174 EIYKPSTAPLVRALQTIELLLKKYEVSNTTKSSSTPSPSTDDNVPTGTLN 223

>DOF18_ARATH (Q84JQ8) Dof zinc finger protein DOF1.8 (AtDOF1.8)|
          Length = 352

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 143 HPIKPGT-----TRTSKPAAI*CPNQITLHTEKKYYHCFSVECPKWQARDDRR 286
           +P  P T      R  K  A+ CP   +L+T+  YY+ +S+  P++  +D RR
Sbjct: 29  NPPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRR 81

>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog|
           3) (M-Delta-3)
          Length = 592

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 18/71 (25%)
 Frame = -1

Query: 172 CPCCARFYGM---LALIQCLLHSC*NVSICCGAAE---------------YSCKKFYDEC 47
           C C   FYG+   ++ + C    C N  +C G  +                +C+K  D C
Sbjct: 296 CACPRGFYGLRCEVSGVTCADGPCFNGGLCVGGEDPDSAYVCHCPPGFQGSNCEKRVDRC 355

Query: 46  LLHSC*NVSIC 14
            L  C N  +C
Sbjct: 356 SLQPCQNGGLC 366

>HELS_METJA (Q58524) Putative ski2-type helicase (EC 3.6.1.-) [Contains:|
           Endonuclease PI-MjaHel (EC 3.1.-.-) (Mja Hel intein)
           (Mja Pep3 intein)]
          Length = 1195

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 7   LHNKLIHSSRNAKDTRHKIFYKNIRRLHNKLIHSSKNAKD 126
           LH K     R +K   H I+ K +R++ NKL   +K+ K+
Sbjct: 490 LHKKYFLKCRISKGVAHYIYSKKLRKIFNKLNMLTKDNKN 529

>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 315  WFSRNSSIRDSIGIARNDSIVPLLGT 392
            W +RN  + D++ I+ N SI+ ++GT
Sbjct: 3056 WKTRNQELEDNVHISPNGSIITIVGT 3081

>RFCS_PYRAB (Q9V2G4) Replication factor C small subunit (RFC small subunit)|
            (Clamp loader small subunit) (PabRFC small subunit)
            [Contains: Pab RFC-1 intein; Pab RFC-2 intein]
          Length = 1437

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 260  KWQAR-DDRRLGFLARFIGMVLTE--LIHQGLDWHRSQR 367
            KW  R DD + G LAR +G +L +  L   G  W  S +
Sbjct: 924  KWLVRYDDEKAGILARVVGFILGDGHLARNGRIWFNSSK 962

>YFGJ_ECOLI (P76575) Hypothetical protein yfgJ|
          Length = 83

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -1

Query: 226 LFCVQCNLIRTSNRCWL*CPCCARFYGMLALI-QCLLHSC*NVSICCGAAEYSCK 65
           L C QC  +   +     C  C  F  M AL   C  H    V   CGA +Y C+
Sbjct: 15  LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDC--HQPLQVLKACGAVDYFCQ 67

>COBS_LEPIN (Q8EYK8) Cobalamin synthase (EC 2.-.-.-)|
          Length = 265

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 153 FMGC*PSSSVFCILARMYQFVVEPPNILVKNFMTSVFCIPARMY 22
           F GC P+      +  +YQF  + PN+L+  F++S+F    R Y
Sbjct: 193 FFGCFPA------VYFLYQFQNQIPNVLLGFFLSSIFVFYFRNY 230

>COBS_LEPIC (Q72M34) Cobalamin synthase (EC 2.-.-.-)|
          Length = 265

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 153 FMGC*PSSSVFCILARMYQFVVEPPNILVKNFMTSVFCIPARMY 22
           F GC P+      +  +YQF  + PN+L+  F++S+F    R Y
Sbjct: 193 FFGCFPA------VYFLYQFQNQIPNVLLGFFLSSIFVFYFRNY 230

>PHF2_HUMAN (O75151) PHD finger protein 2 (GRC5)|
          Length = 1101

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 364 LRAMPIESLMDEFRENHPYESSKEPKPSVIPRLP 263
           + A P +SL+++  +    ++ K PKPS IP+ P
Sbjct: 476 IEATPPQSLLEKVSKKKTPKTVKMPKPSKIPKPP 509

>PMIP_HUMAN (Q99797) Mitochondrial intermediate peptidase, mitochondrial|
           precursor (EC 3.4.24.59) (MIP)
          Length = 713

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 125 TLDE---G*HPIKPGTTRTSKPAAI*CPNQITLHTEKKYYHCFSVECPKWQARDDRRLGF 295
           TLD+   G HP++  TT             I   T++K+Y    V    WQ R    +G+
Sbjct: 581 TLDQIYHGKHPLRNSTT------------DILKETQEKFYGLPYVPNTAWQLRFSHLVGY 628

Query: 296 LARFIGMVLTELI 334
            AR+   +++  +
Sbjct: 629 GARYYSYLMSRAV 641

>CRUM1_MOUSE (Q8VHS2) Crumbs homolog 1 precursor|
          Length = 1405

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 103 VSICC-GAAEYSCKKFYDECLLHSC*NVSIC 14
           V IC  G     C++  DECLLH C N   C
Sbjct: 381 VCICQPGFTGIHCEEDVDECLLHPCLNGGTC 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,999,664
Number of Sequences: 219361
Number of extensions: 1168789
Number of successful extensions: 3069
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3063
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)