ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
2dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
3dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
4dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
5gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA,... 76 1e-10
6gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence 66 9e-08
7gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA,... 66 9e-08
8gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 50 0.005
9emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 42 1.3
10emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in ... 42 1.3
11gb|M30006.1|BOVMHDQBY1 Bovine (clone Y1) MHC class II cell surfa... 42 1.3
12emb|CR382284.13| Zebrafish DNA sequence from clone DKEY-95H16 in... 40 5.3
13ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 5.3
14emb|CR382331.5| Zebrafish DNA sequence from clone DKEY-90L2 in l... 40 5.3
15emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in ... 40 5.3
16emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-bindin... 40 5.3
17gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, compl... 40 5.3
18gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, comp... 40 5.3
19gb|AC011418.5| Homo sapiens chromosome 5 clone CTB-9P16, complet... 40 5.3
20gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, comple... 40 5.3
21emb|BX784025.12| Zebrafish DNA sequence from clone DKEY-72L14 in... 40 5.3
22emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34 40 5.3
23dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.3 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  113 bits (57), Expect = 4e-22
 Identities = 105/121 (86%)
 Strand = Plus / Plus

                                                                            
Query: 268      agcgagggatgaccgacggcttgggttccttgctcgattcatagggatggttctcacgga 327
                |||||||||||| ||| ||| || | ||||||||||  || ||||| |||||||| ||||
Sbjct: 27935782 agcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcgcgga 27935841

                                                                            
Query: 328      actcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttgctcg 387
                |||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||||||
Sbjct: 27935842 actcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttgctcg 27935901

                 
Query: 388      g 388
                |
Sbjct: 27935902 g 27935902
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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0562A06
          Length = 154198

 Score =  113 bits (57), Expect = 4e-22
 Identities = 105/121 (86%)
 Strand = Plus / Plus

                                                                         
Query: 268   agcgagggatgaccgacggcttgggttccttgctcgattcatagggatggttctcacgga 327
             |||||||||||| ||| ||| || | ||||||||||  || ||||| |||||||| ||||
Sbjct: 13274 agcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcgcgga 13333

                                                                         
Query: 328   actcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttgctcg 387
             |||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||||||
Sbjct: 13334 actcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttgctcg 13393

              
Query: 388   g 388
             |
Sbjct: 13394 g 13394
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>dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090L01, full
            insert sequence
          Length = 3709

 Score =  113 bits (57), Expect = 4e-22
 Identities = 105/121 (86%)
 Strand = Plus / Minus

                                                                        
Query: 268  agcgagggatgaccgacggcttgggttccttgctcgattcatagggatggttctcacgga 327
            |||||||||||| ||| ||| || | ||||||||||  || ||||| |||||||| ||||
Sbjct: 3394 agcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcgcgga 3335

                                                                        
Query: 328  actcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttgctcg 387
            |||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||||||
Sbjct: 3334 actcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttgctcg 3275

             
Query: 388  g 388
            |
Sbjct: 3274 g 3274
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>dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H01, full
            insert sequence
          Length = 1784

 Score =  113 bits (57), Expect = 4e-22
 Identities = 105/121 (86%)
 Strand = Plus / Minus

                                                                        
Query: 268  agcgagggatgaccgacggcttgggttccttgctcgattcatagggatggttctcacgga 327
            |||||||||||| ||| ||| || | ||||||||||  || ||||| |||||||| ||||
Sbjct: 1474 agcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcgcgga 1415

                                                                        
Query: 328  actcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttgctcg 387
            |||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||||||
Sbjct: 1414 actcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttgctcg 1355

             
Query: 388  g 388
            |
Sbjct: 1354 g 1354
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>gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA, partial cds
          Length = 3385

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 304  attcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgca 363
            ||||||| |||||||||||||||||||| | ||||| || ||| || ||||| ||||| |
Sbjct: 3092 attcatacggatggttctcacggaactcgttcatcaaggtctccatgggcatggctcgaa 3033

                                  
Query: 364  acgactcgatcgtgcctttgct 385
             ||||||||||| |||||||||
Sbjct: 3032 gcgactcgatcgagcctttgct 3011
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>gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence
          Length = 2117

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 305  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 364
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 1902 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 1843

                                 
Query: 365  cgactcgatcgtgcctttgct 385
            ||| || |||| |||||||||
Sbjct: 1842 cgattcaatcgagcctttgct 1822
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>gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA, partial cds
          Length = 3514

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 305  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 364
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 3176 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 3117

                                 
Query: 365  cgactcgatcgtgcctttgct 385
            ||| || |||| |||||||||
Sbjct: 3116 cgattcaatcgagcctttgct 3096
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>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence
          Length = 127190

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 222    aaaagaagtattatcattgtttctc 246
              |||||||||||||||||||||||||
Sbjct: 116413 aaaagaagtattatcattgtttctc 116437
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>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              7/17
          Length = 348813

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    agtattatcattgtttctcag 248
              |||||||||||||||||||||
Sbjct: 161975 agtattatcattgtttctcag 161995
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>emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in linkage group 2, complete
              sequence
          Length = 146969

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     aaattttttacaagaatattc 79
              |||||||||||||||||||||
Sbjct: 120049 aaattttttacaagaatattc 120069
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>gb|M30006.1|BOVMHDQBY1 Bovine (clone Y1) MHC class II cell surface glycoprotein
           (LA-DQ-beta) gene, exon 1
          Length = 779

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 tgtcctaatcaaattacactg 214
           |||||||||||||||||||||
Sbjct: 245 tgtcctaatcaaattacactg 225
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>emb|CR382284.13| Zebrafish DNA sequence from clone DKEY-95H16 in linkage group 8, complete
              sequence
          Length = 205882

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    ctaatcaaattacactgcac 217
              ||||||||||||||||||||
Sbjct: 136513 ctaatcaaattacactgcac 136532
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>ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03374.1)
            partial mRNA
          Length = 4185

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 355  tcgctcgcaacgactcgatc 374
            ||||||||||||||||||||
Sbjct: 3898 tcgctcgcaacgactcgatc 3879
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>emb|CR382331.5| Zebrafish DNA sequence from clone DKEY-90L2 in linkage group 8,
             complete sequence
          Length = 80921

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ctaatcaaattacactgcac 217
             ||||||||||||||||||||
Sbjct: 80635 ctaatcaaattacactgcac 80654
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>emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in linkage group 8,
             complete sequence
          Length = 170195

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ttacactgcacacagaaaag 226
             ||||||||||||||||||||
Sbjct: 96460 ttacactgcacacagaaaag 96441
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>emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-binding domain DNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 actgcacacagaaaagaagt 230
           ||||||||||||||||||||
Sbjct: 285 actgcacacagaaaagaagt 304
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>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence
          Length = 160545

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 100    atacattctagcaagaatgcaaaa 123
              ||||||||||| ||||||||||||
Sbjct: 102314 atacattctagtaagaatgcaaaa 102291
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>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence
          Length = 180535

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 100   atacattctagcaagaatgcaaaa 123
             ||||||||||| ||||||||||||
Sbjct: 30566 atacattctagtaagaatgcaaaa 30589
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>gb|AC011418.5| Homo sapiens chromosome 5 clone CTB-9P16, complete sequence
          Length = 108511

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    ataaaattttttacaagaat 75
             ||||||||||||||||||||
Sbjct: 61272 ataaaattttttacaagaat 61291
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>gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, complete sequence
          Length = 183666

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   gaaaagaagtattatcattg 240
             ||||||||||||||||||||
Sbjct: 96583 gaaaagaagtattatcattg 96564
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>emb|BX784025.12| Zebrafish DNA sequence from clone DKEY-72L14 in linkage group 8,
            complete sequence
          Length = 257681

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  ctaatcaaattacactgcac 217
            ||||||||||||||||||||
Sbjct: 1714 ctaatcaaattacactgcac 1733
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>emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34
          Length = 5700

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  aaaagaagtattatcattgt 241
            ||||||||||||||||||||
Sbjct: 3635 aaaagaagtattatcattgt 3654
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>dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP13-270P17, complete
              sequence
          Length = 178812

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 199    taatcaaattacactgcacacaga 222
              |||| |||||||||||||||||||
Sbjct: 127696 taataaaattacactgcacacaga 127719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,547,945
Number of Sequences: 3902068
Number of extensions: 3547945
Number of successful extensions: 66638
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66581
Number of HSP's gapped (non-prelim): 57
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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