ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03h01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY494984.1| Triticum aestivum LON1 protease mRNA, complete cds Length = 3143 Score = 698 bits (352), Expect = 0.0 Identities = 429/452 (94%), Gaps = 2/452 (0%) Strand = Plus / Minus Query: 1 atgatactgcaacattcaattctccctggctgaaataggttacatatacacccaaaccga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3103 atgatactgcaacattcaattctccctggctgaaataggttacatatacacccaaaccga 3044 Query: 61 caacaacaggtggatctccttgctaccaataccaaaccgagcatagatagatgagcatcc 120 |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 3043 caacaacaggtggacctccttgctacca-tagcaaaccgagcatagatagatgagcatcc 2985 Query: 121 ctctataaatacaagcacaaagaccggagcagatctccctgccgcttttgtggatagcaa 180 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2984 ctctataaatacaatcacaaagaccagagcagatctccctgccgcttttgtggatagcaa 2925 Query: 181 gtacccatatacacattccgcatattagcttaactgaattggacgagcgatgctggcgtc 240 ||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| Sbjct: 2924 gtatccatatacacattccgcatattagcttaactgagttggacgagcaacgctggcgtc 2865 Query: 241 atgagatttcactccgatggagcaattgctcgcctacgctcagtcgctcgtttgtagata 300 |||||||||| |||| | |||||||||||||||||||||||| ||||| |||||||||| Sbjct: 2864 atgagatttcgctccaacggagcaattgctcgcctacgctca-acgctcatttgtagata 2806 Query: 301 tctgggcagtgaatagcgacgaatcttcaaaacaggtacatggccaccgaggaaatacta 360 ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| | | Sbjct: 2805 tctgggcggtgaatagcgacgaatcttcaaaacgagtaaatggccaccgaggaaatgcca 2746 Query: 361 catcaggcgccaattgggatttgtccgtgctatagactggagtgtagcctcaaagggaat 420 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2745 catcaggcgccaattggtatttgcccgtgctatagactggagtgtagcctcaaagggaat 2686 Query: 421 ccattctcaaaagcatggccaagtacttcctc 452 |||||||||||||||||||||||||||||||| Sbjct: 2685 ccattctcaaaagcatggccaagtacttcctc 2654
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 388 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 447 |||||||| |||||||| | |||| |||| ||||| |||||||||||| |||||||| Sbjct: 20645010 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 20645069 Query: 448 tcctcgatg 456 ||||||||| Sbjct: 20645070 tcctcgatg 20645078
>gb|DQ002905.1| Oryza sativa (indica cultivar-group) lon protease lon1a (lon1) mRNA, complete sequence, alternatively spliced Length = 2986 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 388 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 447 |||||||| |||||||| | |||| |||| ||||| |||||||||||| |||||||| Sbjct: 2848 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 2789 Query: 448 tcctcgatg 456 ||||||||| Sbjct: 2788 tcctcgatg 2780
>gb|AY129070.1| Oryza sativa (indica cultivar-group) Lon protease (Lon1) mRNA, complete cds Length = 2908 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 388 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 447 |||||||| |||||||| | |||| |||| ||||| |||||||||||| |||||||| Sbjct: 2770 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 2711 Query: 448 tcctcgatg 456 ||||||||| Sbjct: 2710 tcctcgatg 2702
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1112_E07 Length = 132055 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 388 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 447 |||||||| |||||||| | |||| |||| ||||| |||||||||||| |||||||| Sbjct: 38621 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 38680 Query: 448 tcctcgatg 456 ||||||||| Sbjct: 38681 tcctcgatg 38689
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515E01 Length = 140063 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 388 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 447 |||||||| |||||||| | |||| |||| ||||| |||||||||||| |||||||| Sbjct: 110668 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 110727 Query: 448 tcctcgatg 456 ||||||||| Sbjct: 110728 tcctcgatg 110736
>dbj|AK119169.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G01, full insert sequence Length = 1299 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 388 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 447 |||||||| |||||||| | |||| |||| ||||| |||||||||||| |||||||| Sbjct: 900 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 841 Query: 448 tcctcgatg 456 ||||||||| Sbjct: 840 tcctcgatg 832
>dbj|AK061670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G02, full insert sequence Length = 1299 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 388 tgctatagactggagtgtagcctcaaagggaatccattctcaaaagcatggccaagtact 447 |||||||| |||||||| | |||| |||| ||||| |||||||||||| |||||||| Sbjct: 900 tgctatagcttggagtgtggtctcagagggcatccaccttcaaaagcatggtcaagtact 841 Query: 448 tcctcgatg 456 ||||||||| Sbjct: 840 tcctcgatg 832
>gb|AF385580.2| Dichanthelium lanuginosum Lon protease (lon) mRNA, complete cds Length = 3207 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 427 tcaaaagcatggccaagtacttcctcgatg 456 |||||||| ||| ||||||||||||||||| Sbjct: 2640 tcaaaagcgtggtcaagtacttcctcgatg 2611
>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence Length = 202155 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 actgcaacattcaattctccc 26 ||||||||||||||||||||| Sbjct: 80340 actgcaacattcaattctccc 80320
>gb|AC140791.4| Gallus gallus BAC clone TAM33-20G4 from chromosome ul, complete sequence Length = 219854 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 atagatagatgagcatccctc 123 ||||||||||||||||||||| Sbjct: 6522 atagatagatgagcatccctc 6502
>dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02A14, TM0072a, complete sequence Length = 100740 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 atacacattccgcatattagcttaa 213 |||||||||||||||||||| |||| Sbjct: 4022 atacacattccgcatattagattaa 4046
>gb|AE000665.1|MMAE000665 Mus musculus TCR beta locus from bases 501860 to 700960 (section 3 of 3) of the complete sequence Length = 199101 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gcttttgtggatagcaagta 183 |||||||||||||||||||| Sbjct: 194392 gcttttgtggatagcaagta 194373
>gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, complete sequence Length = 204437 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gcttttgtggatagcaagta 183 |||||||||||||||||||| Sbjct: 96556 gcttttgtggatagcaagta 96537
>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE Length = 119528 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cctctataaatacaagcaca 139 |||||||||||||||||||| Sbjct: 9634 cctctataaatacaagcaca 9615
>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence Length = 85905 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cctctataaatacaagcaca 139 |||||||||||||||||||| Sbjct: 64740 cctctataaatacaagcaca 64759 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cctctataaatacaagcaca 139 |||||||||||||||||||| Sbjct: 55200 cctctataaatacaagcaca 55219
>gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epithelial calcium channel 1 (Ecac1), epithelial calcium channel 2 (Ecac2), and ephrin type A receptor (Mep) genes, complete cds; and T cell receptor beta chain (Tcr) gene, partial cds Length = 169781 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gcttttgtggatagcaagta 183 |||||||||||||||||||| Sbjct: 142129 gcttttgtggatagcaagta 142148
>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE Length = 106640 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cctctataaatacaagcaca 139 |||||||||||||||||||| Sbjct: 105678 cctctataaatacaagcaca 105659 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cctctataaatacaagcaca 139 |||||||||||||||||||| Sbjct: 96032 cctctataaatacaagcaca 96013 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,414,042 Number of Sequences: 3902068 Number of extensions: 3414042 Number of successful extensions: 49813 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49763 Number of HSP's gapped (non-prelim): 48 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
