ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069204.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
2dbj|AK067032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
3dbj|AK059704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
6emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118... 58 3e-05
7ref|XM_641900.1| Dictyostelium discoideum hypothetical protein (... 44 0.38
8gb|AC097505.2| Homo sapiens BAC clone RP11-362J17 from 4, comple... 44 0.38
9ref|XM_635880.1| Dictyostelium discoideum hypothetical protein (... 42 1.5
10gb|AY536238.1| HIV-1 isolate X1241 from Argentina, complete genome 42 1.5
11gb|AC146034.4| Pan troglodytes BAC clone RP43-16G9 from 7, compl... 42 1.5
12gb|AC007078.4| Homo sapiens BAC clone RP11-340A14 from 7, comple... 42 1.5
13gb|AC138116.4| Mus musculus BAC clone RP24-242H5 from chromosome... 42 1.5
14emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in... 42 1.5
15emb|AL121898.23|HSA430K20 Human DNA sequence from clone RP11-430... 42 1.5
16gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, com... 42 1.5
17emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 i... 42 1.5
18emb|BX663513.13| Zebrafish DNA sequence from clone DKEY-234F12 i... 42 1.5
19gb|AC093540.3| Pan troglodytes clone RP43-84M6, complete sequence 42 1.5
20emb|AL935280.12| Zebrafish DNA sequence from clone DKEY-261J4, c... 42 1.5
21gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 42 1.5
22gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 40 5.9
23gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.9
24gb|AC134245.2| Mus musculus BAC clone RP23-144I22 from chromosom... 40 5.9
25gb|AF286887.4| Homo sapiens chromosome 8 clone RP11-206N20 map q... 40 5.9
26gb|AC132326.3| Mus musculus BAC clone RP24-191F10 from chromosom... 40 5.9
27gb|AC122821.4| Mus musculus BAC clone RP23-201I4 from chromosome... 40 5.9
28gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosom... 40 5.9
29ref|XM_668951.1| Plasmodium berghei strain ANKA hypothetical pro... 40 5.9
30gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosom... 40 5.9
31emb|AL353580.7| Human DNA sequence from clone RP11-248N6 on chro... 40 5.9
32gb|AC163293.4| Mus musculus BAC clone RP23-156J21 from chromosom... 40 5.9
33emb|AL772195.4| Mouse DNA sequence from clone RP23-218C5 on chro... 40 5.9
34emb|AL662882.13| Mouse DNA sequence from clone RP23-187N13 on ch... 40 5.9
35emb|AL772274.8| Zebrafish DNA sequence from clone CH211-196D14 i... 40 5.9
36gb|AC104350.6| Homo sapiens chromosome 8, clone RP11-1112C15, co... 40 5.9
37gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 5.9
38gb|AC079096.4| Homo sapiens chromosome 18, clone RP11-75N4, comp... 40 5.9
39gb|AC096742.3| Homo sapiens BAC clone RP11-328K4 from 4, complet... 40 5.9
40gb|AC017100.4| Homo sapiens BAC clone RP11-549B18 from 18, compl... 40 5.9
41gb|AF349878.1|AF349878 HIV-1 clone 00SE.G31eL from Sweden nonfun... 40 5.9
42gb|AC073057.6| Homo sapiens BAC clone RP11-114G11 from 7, comple... 40 5.9
43dbj|AK087218.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 5.9
44dbj|AK034869.1| Mus musculus 12 days embryo embryonic body betwe... 40 5.9
45emb|BX255895.6| Zebrafish DNA sequence from clone CH211-241M14 i... 40 5.9
46gb|AC010531.8| Homo sapiens chromosome 16 clone RP11-178L8, comp... 40 5.9
47emb|BX005098.11| Zebrafish DNA sequence from clone DKEY-211F22 i... 40 5.9
48gb|AC005798.10|AC005798 Homo sapiens chromosome 4 clone RP11-442... 40 5.9
49gb|AF296825.1|F5O24 Arabidopsis thaliana BAC F5O24 40 5.9
50dbj|AK205577.1| Mus musculus cDNA, clone:Y2G0102C13, strand:plus... 40 5.9
51dbj|AK129391.1| Mus musculus mRNA for mKIAA1552 protein 40 5.9
52gb|BC025645.1| Mus musculus FLYWCH-type zinc finger 1, mRNA (cDN... 40 5.9
53gb|AC005746.1|AC005746 Homo sapiens chromosome 17, clone hRPK.33... 40 5.9 
>dbj|AK069204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009C12, full
            insert sequence
          Length = 2803

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                        
Query: 324  tgcgacgcccacttgcccgccatagctgtactcatcatgtcatagatcttcccgctcagg 383
            ||||| ||||||||||  ||||||||||| |||||||| ||||| |||||||| || || 
Sbjct: 2463 tgcgaggcccacttgctggccatagctgtgctcatcatctcatacatcttcccacttagc 2404

                                                                    
Query: 384  tcagttgggttatcaggtgtaaagccgctagaaatcattgaagtttcaaagaggat 439
            || |  ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 2403 tcggcagggttgtcaggtgtaaagccactagagatcatagaagtttcaaacaggat 2348
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>dbj|AK067032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088H23, full
            insert sequence
          Length = 1894

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                        
Query: 324  tgcgacgcccacttgcccgccatagctgtactcatcatgtcatagatcttcccgctcagg 383
            ||||| ||||||||||  ||||||||||| |||||||| ||||| |||||||| || || 
Sbjct: 1534 tgcgaggcccacttgctggccatagctgtgctcatcatctcatatatcttcccacttagc 1475

                                                                    
Query: 384  tcagttgggttatcaggtgtaaagccgctagaaatcattgaagtttcaaagaggat 439
            || |  ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 1474 tcggcagggttgtcaggtgtaaagccactagagatcatagaagtttcaaacaggat 1419
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>dbj|AK059704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D05, full
           insert sequence
          Length = 792

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                       
Query: 324 tgcgacgcccacttgcccgccatagctgtactcatcatgtcatagatcttcccgctcagg 383
           ||||| ||||||||||  ||||||||||| |||||||| ||||| |||||||| || || 
Sbjct: 434 tgcgaggcccacttgctagccatagctgtgctcatcatctcatatatcttcccacttagc 375

                                                                   
Query: 384 tcagttgggttatcaggtgtaaagccgctagaaatcattgaagtttcaaagaggat 439
           || |  ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 374 tcggcagggttgtcaggtgtaaagccactagagatcatagaagtttcaaacaggat 319
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 324      tgcgacgcccacttgcccgccatagctgtactcatcatgtcatagatcttccc 376
                ||||| ||||||||||  ||||||||||| |||||||| ||||| ||||||||
Sbjct: 19962804 tgcgaggcccacttgctggccatagctgtgctcatcatctcatatatcttccc 19962856



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 401      tgtaaagccgctagaaatcattgaagtttcaaagaggat 439
                ||||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 19963042 tgtaaagccactagagatcatagaagtttcaaacaggat 19963080
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 324      tgcgacgcccacttgcccgccatagctgtactcatcatgtcatagatcttccc 376
                ||||| ||||||||||  ||||||||||| |||||||| ||||| ||||||||
Sbjct: 19889018 tgcgaggcccacttgctggccatagctgtgctcatcatctcatatatcttccc 19889070



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 401      tgtaaagccgctagaaatcattgaagtttcaaagaggat 439
                ||||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 19889256 tgtaaagccactagagatcatagaagtttcaaacaggat 19889294
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>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 165433

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 324   tgcgacgcccacttgcccgccatagctgtactcatcatgtcatagatcttccc 376
             ||||| ||||||||||  ||||||||||| |||||||| ||||| ||||||||
Sbjct: 64456 tgcgaggcccacttgctggccatagctgtgctcatcatctcatatatcttccc 64404



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 401   tgtaaagccgctagaaatcattgaagtttcaaagaggat 439
             ||||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 64218 tgtaaagccactagagatcatagaagtttcaaacaggat 64180
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>ref|XM_641900.1| Dictyostelium discoideum hypothetical protein (DDB0190063), partial
           mRNA
          Length = 3099

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 31  ttattattactagtattaccac 52
           ||||||||||||||||||||||
Sbjct: 233 ttattattactagtattaccac 212
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>gb|AC097505.2| Homo sapiens BAC clone RP11-362J17 from 4, complete sequence
          Length = 184043

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 300   tggcttggctgggcaggttggggctg 325
             |||||||| |||||||||||||||||
Sbjct: 74705 tggcttggatgggcaggttggggctg 74730
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>ref|XM_635880.1| Dictyostelium discoideum hypothetical protein (DDB0218269), partial
            mRNA
          Length = 3804

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 31   ttattattactagtattacca 51
            |||||||||||||||||||||
Sbjct: 1643 ttattattactagtattacca 1623
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>gb|AY536238.1| HIV-1 isolate X1241 from Argentina, complete genome
          Length = 8760

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 32   tattattactagtattaccac 52
            |||||||||||||||||||||
Sbjct: 6861 tattattactagtattaccac 6841
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>gb|AC146034.4| Pan troglodytes BAC clone RP43-16G9 from 7, complete sequence
          Length = 156208

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 306   ggctgggcaggttggggctgc 326
             |||||||||||||||||||||
Sbjct: 78838 ggctgggcaggttggggctgc 78858
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>gb|AC007078.4| Homo sapiens BAC clone RP11-340A14 from 7, complete sequence
          Length = 14475

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 306  ggctgggcaggttggggctgc 326
            |||||||||||||||||||||
Sbjct: 5267 ggctgggcaggttggggctgc 5247
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>gb|AC138116.4| Mus musculus BAC clone RP24-242H5 from chromosome 15, complete sequence
          Length = 164014

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    gttttattattactagtatta 48
             |||||||||||||||||||||
Sbjct: 78506 gttttattattactagtatta 78526
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>emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in linkage group 15,
              complete sequence
          Length = 194916

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     caaaatgttttattattacta 42
              |||||||||||||||||||||
Sbjct: 131317 caaaatgttttattattacta 131337
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>emb|AL121898.23|HSA430K20 Human DNA sequence from clone RP11-430K20 on chromosome 20 Contains the
             5' end of the PLCB4 gene for phospholipase C beta 4 and a
             CpG island, complete sequence
          Length = 210359

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   ctgggcaggttggggctgcga 328
             |||||||||||||||||||||
Sbjct: 99040 ctgggcaggttggggctgcga 99060
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>gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, complete sequence
          Length = 190455

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     gttttattattactagtatta 48
              |||||||||||||||||||||
Sbjct: 155032 gttttattattactagtatta 155012
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>emb|BX470168.7| Zebrafish DNA sequence from clone CH211-288L20 in linkage group 6,
              complete sequence
          Length = 148605

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 25     aatgttttattattactagtattac 49
              ||||||||||||||| |||||||||
Sbjct: 135500 aatgttttattattagtagtattac 135524
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>emb|BX663513.13| Zebrafish DNA sequence from clone DKEY-234F12 in linkage group 15,
              complete sequence
          Length = 249413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 29     ttttattattactagtattac 49
              |||||||||||||||||||||
Sbjct: 117783 ttttattattactagtattac 117803
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>gb|AC093540.3| Pan troglodytes clone RP43-84M6, complete sequence
          Length = 171092

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 306    ggctgggcaggttggggctgc 326
              |||||||||||||||||||||
Sbjct: 149556 ggctgggcaggttggggctgc 149576
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>emb|AL935280.12| Zebrafish DNA sequence from clone DKEY-261J4, complete sequence
          Length = 221563

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 29    ttttattattactagtattac 49
             |||||||||||||||||||||
Sbjct: 19781 ttttattattactagtattac 19801
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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 213     tctcatttctgctggccagcc 233
               |||||||||||||||||||||
Sbjct: 1079675 tctcatttctgctggccagcc 1079655
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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    caagcggctcaggttcaggg 278
              ||||||||||||||||||||
Sbjct: 855193 caagcggctcaggttcaggg 855212
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     ttctgctggccagcctcgac 238
               ||||||||||||||||||||
Sbjct: 1595746 ttctgctggccagcctcgac 1595765
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>gb|AC134245.2| Mus musculus BAC clone RP23-144I22 from chromosome 12, complete
             sequence
          Length = 213349

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    gttttattattactagtattacca 51
             ||||||||||||||||| ||||||
Sbjct: 50855 gttttattattactagtcttacca 50832
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>gb|AF286887.4| Homo sapiens chromosome 8 clone RP11-206N20 map q12.1, complete
             sequence
          Length = 192948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    aatgttttattattactagtatta 48
             |||||||||||||||||| |||||
Sbjct: 19976 aatgttttattattactattatta 19999
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>gb|AC132326.3| Mus musculus BAC clone RP24-191F10 from chromosome 16, complete
             sequence
          Length = 153544

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   ataaaaaggaacaagcagag 148
             ||||||||||||||||||||
Sbjct: 36934 ataaaaaggaacaagcagag 36915
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>gb|AC122821.4| Mus musculus BAC clone RP23-201I4 from chromosome 17, complete sequence
          Length = 220013

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 342    gccatagctgtactcatcatgtcataga 369
              |||| |||||| ||||||||||||||||
Sbjct: 110558 gccagagctgtcctcatcatgtcataga 110585
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>gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosome 12, complete
             sequence
          Length = 170164

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    gttttattattactagtattacca 51
             ||||||||||||||||| ||||||
Sbjct: 83195 gttttattattactagtcttacca 83218
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>ref|XM_668951.1| Plasmodium berghei strain ANKA hypothetical protein (PB000409.03.0)
           partial mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 25  aatgttttattattactagtattaccac 52
           ||||||||||||||| || |||||||||
Sbjct: 782 aatgttttattattattattattaccac 755
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>gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosome 12, complete
             sequence
          Length = 205985

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    gttttattattactagtattacca 51
             ||||||||||||||||| ||||||
Sbjct: 12072 gttttattattactagtcttacca 12095
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>emb|AL353580.7| Human DNA sequence from clone RP11-248N6 on chromosome 13 Contains two
              olfactory receptor pseudogenes and a nucleophosmin
              (nucleolar phosphoprotein B23, numatrin) NPM1 pseudogene,
              complete sequence
          Length = 162695

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ttttattattactagtatta 48
              ||||||||||||||||||||
Sbjct: 129142 ttttattattactagtatta 129123
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>gb|AC163293.4| Mus musculus BAC clone RP23-156J21 from chromosome 16, complete sequence
          Length = 205834

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    ataaaaaggaacaagcagag 148
              ||||||||||||||||||||
Sbjct: 191312 ataaaaaggaacaagcagag 191293
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>emb|AL772195.4| Mouse DNA sequence from clone RP23-218C5 on chromosome 11 Contains the
             5' end of the Ugp2 gene for  UDP-glucose pyrophosphorylase
             2, two novel genes, a cytoplasmic dynein light chain 1
             (Dnclc1) pseudogene, a RAB5A member RAS oncogene family
             (Rab5a) pseudogene, a novel pseudogene and a CpG island,
             complete sequence
          Length = 173182

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tttattattactagtattac 49
             ||||||||||||||||||||
Sbjct: 47129 tttattattactagtattac 47110
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>emb|AL662882.13| Mouse DNA sequence from clone RP23-187N13 on chromosome 11, complete
              sequence
          Length = 222359

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    ataataaaaaggaacaagca 145
              ||||||||||||||||||||
Sbjct: 147355 ataataaaaaggaacaagca 147374
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>emb|AL772274.8| Zebrafish DNA sequence from clone CH211-196D14 in linkage group 11
              Contains five CpG islands, complete sequence
          Length = 189626

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ttttattattactagtatta 48
              ||||||||||||||||||||
Sbjct: 117166 ttttattattactagtatta 117147
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>gb|AC104350.6| Homo sapiens chromosome 8, clone RP11-1112C15, complete sequence
          Length = 152908

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    aatgttttattattactagtatta 48
             |||||||||||||||||| |||||
Sbjct: 19976 aatgttttattattactattatta 19999
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 297     tgctggcttggctgggcaggttgg 320
               |||||||||| |||||||||||||
Sbjct: 2354229 tgctggcttgtctgggcaggttgg 2354252
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>gb|AC079096.4| Homo sapiens chromosome 18, clone RP11-75N4, complete sequence
          Length = 119927

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   aaaggaacaagcagagagcgtggg 156
             ||||||||||| ||||||||||||
Sbjct: 61723 aaaggaacaaggagagagcgtggg 61700
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>gb|AC096742.3| Homo sapiens BAC clone RP11-328K4 from 4, complete sequence
          Length = 113991

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 21    ccaaaatgttttattattactagtatta 48
             ||||||||||||||||||| || |||||
Sbjct: 88954 ccaaaatgttttattattattattatta 88981
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>gb|AC017100.4| Homo sapiens BAC clone RP11-549B18 from 18, complete sequence
          Length = 202950

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 133    aaaggaacaagcagagagcgtggg 156
              ||||||||||| ||||||||||||
Sbjct: 180684 aaaggaacaaggagagagcgtggg 180707
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>gb|AF349878.1|AF349878 HIV-1 clone 00SE.G31eL from Sweden nonfunctional envelope
           glycoprotein, C2-V5 region (env) gene, partial sequence
          Length = 717

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 31  ttattattactagtattacc 50
           ||||||||||||||||||||
Sbjct: 608 ttattattactagtattacc 589
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>gb|AC073057.6| Homo sapiens BAC clone RP11-114G11 from 7, complete sequence
          Length = 178105

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   gaaataataaaaaggaacaa 142
             ||||||||||||||||||||
Sbjct: 32327 gaaataataaaaaggaacaa 32346
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>dbj|AK087218.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030034P13 product:unclassifiable, full
            insert sequence
          Length = 3164

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 342  gccatagctgtactcatcatgtcataga 369
            |||| |||||| ||||||||||||||||
Sbjct: 2052 gccagagctgtcctcatcatgtcataga 2025
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>dbj|AK034869.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430051J17 product:similar to HYPOTHETICAL PROTEIN
            DKFZP761A132 [Homo sapiens], full insert sequence
          Length = 2938

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 342  gccatagctgtactcatcatgtcataga 369
            |||| |||||| ||||||||||||||||
Sbjct: 2782 gccagagctgtcctcatcatgtcataga 2809
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>emb|BX255895.6| Zebrafish DNA sequence from clone CH211-241M14 in linkage group 6,
              complete sequence
          Length = 159627

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     aatgttttattattactagtatta 48
              ||||||||||||||| ||||||||
Sbjct: 153045 aatgttttattattaatagtatta 153068
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>gb|AC010531.8| Homo sapiens chromosome 16 clone RP11-178L8, complete sequence
          Length = 175051

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    aatgttttattattactagtatta 48
             ||||||||||||||| ||||||||
Sbjct: 48156 aatgttttattattagtagtatta 48133
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>emb|BX005098.11| Zebrafish DNA sequence from clone DKEY-211F22 in linkage group 7,
             complete sequence
          Length = 100658

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   aataataaaaaggaacaagc 144
             ||||||||||||||||||||
Sbjct: 48913 aataataaaaaggaacaagc 48932
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>gb|AC005798.10|AC005798 Homo sapiens chromosome 4 clone RP11-442P12, complete sequence
          Length = 206631

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    aataataaaaaggaacaagc 144
              ||||||||||||||||||||
Sbjct: 141770 aataataaaaaggaacaagc 141789
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>gb|AF296825.1|F5O24 Arabidopsis thaliana BAC F5O24
          Length = 101458

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   gctagaaatcattgaagttt 429
             ||||||||||||||||||||
Sbjct: 27948 gctagaaatcattgaagttt 27929
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>dbj|AK205577.1| Mus musculus cDNA, clone:Y2G0102C13, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000045517, based on BLAT search
          Length = 409

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 342 gccatagctgtactcatcatgtcataga 369
           |||| |||||| ||||||||||||||||
Sbjct: 313 gccagagctgtcctcatcatgtcataga 340
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>dbj|AK129391.1| Mus musculus mRNA for mKIAA1552 protein
          Length = 2503

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 342  gccatagctgtactcatcatgtcataga 369
            |||| |||||| ||||||||||||||||
Sbjct: 2347 gccagagctgtcctcatcatgtcataga 2374
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>gb|BC025645.1| Mus musculus FLYWCH-type zinc finger 1, mRNA (cDNA clone
            IMAGE:5323568), partial cds
          Length = 1747

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 342  gccatagctgtactcatcatgtcataga 369
            |||| |||||| ||||||||||||||||
Sbjct: 1574 gccagagctgtcctcatcatgtcataga 1601
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>gb|AC005746.1|AC005746 Homo sapiens chromosome 17, clone hRPK.332_H_18, complete sequence
          Length = 189356

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    aaataataaaaaggaacaag 143
              ||||||||||||||||||||
Sbjct: 174275 aaataataaaaaggaacaag 174256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,021,663
Number of Sequences: 3902068
Number of extensions: 4021663
Number of successful extensions: 93433
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93221
Number of HSP's gapped (non-prelim): 212
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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