Clone Name | rbastl03g11 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 446 bits (225), Expect = e-122 Identities = 240/245 (97%) Strand = Plus / Minus Query: 187 agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 246 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668 Query: 247 gtgctcaaatcaaatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 306 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608 Query: 307 tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggt 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2607 tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggt 2548 Query: 367 gcggttcttgagctgcgggtccgagttcatggccaccacctgcttctcgatgccctccag 426 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2547 gcggttctttagctgcgggtccgagttcatggccaccacctgcttctcgatgccctccag 2488 Query: 427 cttcg 431 ||||| Sbjct: 2487 cttcg 2483 Score = 234 bits (118), Expect = 2e-58 Identities = 140/147 (95%), Gaps = 4/147 (2%) Strand = Plus / Minus Query: 24 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 84 agctgagctgagcttccgcatgccgatcaaacccgtcgggcacgcaccc----ttattgc 139 ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 140 cttaattattcacgcaccggcacaact 166 |||||||||||| |||||||||||||| Sbjct: 2776 cttaattattcatgcaccggcacaact 2750
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 262 bits (132), Expect = 8e-67 Identities = 159/168 (94%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 319 ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 902 atggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtggtcg 843 Query: 320 gaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 842 gaggtgttggggtagagcagcatgtaggggaacttggccggcccggtgcggttcttgagc 783 Query: 380 tgcgggtccgagttcatggccaccacctgcttctcgatgccctccagc 427 |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 782 cgcgggtccccgttcatggccaccacctgcttctcgatgccctccagc 735 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 17 catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 66 ||||||||| ||||||||||||| |||||| |||||||| ||||||||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 111 bits (56), Expect = 2e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 319 ||||| |||||||| ||||||||| ||||||| ||||| | || ||| |||||||| Sbjct: 1082 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 1023 Query: 320 gaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 |||||||| ||||||||||||||||| || ||||| ||||| ||| |||||||||||||| Sbjct: 1022 gaggtgttggggtagagcagcatgtagggaaacttagccgggccgttgcggttcttgagc 963 Query: 380 tgcgggtccgagttcatggccaccacct 407 | |||||| ||||||| ||||||||| Sbjct: 962 tccgggtcatggttcatgcccaccacct 935
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 111 bits (56), Expect = 2e-21 Identities = 125/148 (84%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 319 ||||| |||||||| ||||||||| ||||||| ||||| | || ||| |||||||| Sbjct: 2653 atggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggtcg 2594 Query: 320 gaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 |||||||| ||||||||||||||||| || ||||| ||||| ||| |||||||||||||| Sbjct: 2593 gaggtgttggggtagagcagcatgtagggaaacttagccgggccgttgcggttcttgagc 2534 Query: 380 tgcgggtccgagttcatggccaccacct 407 | |||||| ||||||| ||||||||| Sbjct: 2533 tccgggtcatggttcatgcccaccacct 2506
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 103 bits (52), Expect = 5e-19 Identities = 124/148 (83%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 319 ||||| |||||||| ||||||||| | ||||||||||| |||| ||| |||| ||| Sbjct: 749 atggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtgatcg 690 Query: 320 gaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 |||||||| |||||||||| |||||| |||||||||||||| ||| |||||||| ||| Sbjct: 689 gaggtgttggggtagagcaacatgtaggggaacttggccggaccgttgcggttcaacagc 630 Query: 380 tgcgggtccgagttcatggccaccacct 407 |||||||| ||||||| ||||||||| Sbjct: 629 tgcgggtcgtggttcatgcccaccacct 602
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 736 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 677 Query: 376 gag 378 ||| Sbjct: 676 gag 674
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||| Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672 Query: 376 gag 378 ||| Sbjct: 671 gag 669
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Plus Query: 266 atgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcggaggtg 325 |||||||| ||||||||| |||||||||| || |||| ||| ||||||| ||||| Sbjct: 1 atgctgttggggatgcccttggcggtgaggccggcggcggcacccttgtggtcttaggtg 60 Query: 326 tttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagctgcggg 385 || ||||||||||||||||| |||| ||||||||| ||| |||||||| ||||||||| Sbjct: 61 ttagggtagagcagcatgtaggggagcttggccgggccgttgcggttcaacagctgcggg 120 Query: 386 tccgagttcatggccaccacct 407 || ||||||| ||||||||| Sbjct: 121 tcgtggttcatgcccaccacct 142
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 7e-15 Identities = 120/145 (82%) Strand = Plus / Minus Query: 255 atcaaatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgt 314 |||| ||||| |||||||| |||||||||||||||| ||| || | || | ||| || Sbjct: 30026450 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 30026391 Query: 315 ggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttct 374 |||||||||||||||||||||||||| |||| ||||| |||| ||||||| ||||||| Sbjct: 30026390 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccgacacggttct 30026331 Query: 375 tgagctgcgggtccgagttcatggc 399 || | || |||||| ||||||||| Sbjct: 30026330 tgcggtgggggtccttgttcatggc 30026306 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| ||||| ||||||||||||||||||| ||| || || |||||||||| Sbjct: 27803047 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 27802988 Query: 376 gagc 379 |||| Sbjct: 27802987 gagc 27802984 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 27821682 atggagatgctgttggggatgcccatggcggtgagccc 27821645 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 27821616 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 27821560
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 89.7 bits (45), Expect = 7e-15 Identities = 120/145 (82%) Strand = Plus / Minus Query: 255 atcaaatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgt 314 |||| ||||| |||||||| |||||||||||||||| ||| || | || | ||| || Sbjct: 2696 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 2637 Query: 315 ggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttct 374 |||||||||||||||||||||||||| |||| ||||| |||| ||||||| ||||||| Sbjct: 2636 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccgacacggttct 2577 Query: 375 tgagctgcgggtccgagttcatggc 399 || | || |||||| ||||||||| Sbjct: 2576 tgcggtgggggtccttgttcatggc 2552
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 89.7 bits (45), Expect = 7e-15 Identities = 120/145 (82%) Strand = Plus / Plus Query: 255 atcaaatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgt 314 |||| ||||| |||||||| |||||||||||||||| ||| || | || | ||| || Sbjct: 81301 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 81360 Query: 315 ggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttct 374 |||||||||||||||||||||||||| |||| ||||| |||| ||||||| ||||||| Sbjct: 81361 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccgacacggttct 81420 Query: 375 tgagctgcgggtccgagttcatggc 399 || | || |||||| ||||||||| Sbjct: 81421 tgcggtgggggtccttgttcatggc 81445
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 7e-15 Identities = 120/145 (82%) Strand = Plus / Minus Query: 255 atcaaatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgt 314 |||| ||||| |||||||| |||||||||||||||| ||| || | || | ||| || Sbjct: 30117872 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 30117813 Query: 315 ggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttct 374 |||||||||||||||||||||||||| |||| ||||| |||| ||||||| ||||||| Sbjct: 30117812 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccgacacggttct 30117753 Query: 375 tgagctgcgggtccgagttcatggc 399 || | || |||||| ||||||||| Sbjct: 30117752 tgcggtgggggtccttgttcatggc 30117728 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| ||||| ||||||||||||||||||| ||| || || |||||||||| Sbjct: 27894371 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 27894312 Query: 376 gagc 379 |||| Sbjct: 27894311 gagc 27894308 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 27913006 atggagatgctgttggggatgcccatggcggtgagccc 27912969 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 27912940 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 27912884
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 89.7 bits (45), Expect = 7e-15 Identities = 120/145 (82%) Strand = Plus / Minus Query: 255 atcaaatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgt 314 |||| ||||| |||||||| |||||||||||||||| ||| || | || | ||| || Sbjct: 2729 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 2670 Query: 315 ggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttct 374 |||||||||||||||||||||||||| |||| ||||| |||| ||||||| ||||||| Sbjct: 2669 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccgacacggttct 2610 Query: 375 tgagctgcgggtccgagttcatggc 399 || | || |||||| ||||||||| Sbjct: 2609 tgcggtgggggtccttgttcatggc 2585
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 319 ||||| |||||||| |||||||||||||||| ||| || | || | ||| || ||||| Sbjct: 2609 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 2550 Query: 320 gaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||||||||||||||||||| |||| ||||| |||| ||||||| ||||||||| | Sbjct: 2549 gaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccgacacggttcttgcgg 2490 Query: 380 tgcgggtccgagttcatggc 399 || |||||| ||||||||| Sbjct: 2489 tgggggtccttgttcatggc 2470
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| |||||||||||| |||| ||||||| |||||| ||| |||||||||| Sbjct: 2562 gtcggaggtgttggggtagagcagcgtgtaggggaactcggccgggccgttgcggttctt 2503 Query: 376 gagctgcgggtccgagttcatgg 398 ||| | ||||||| |||||||| Sbjct: 2502 gaggcgagggtccgcgttcatgg 2480
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| ||||| ||||||||||||||||||| ||| || || |||||||||| Sbjct: 2541 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 2482 Query: 376 gagc 379 |||| Sbjct: 2481 gagc 2478
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| ||||| ||||||||||||||||||| ||| || || |||||||||| Sbjct: 47177 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 47118 Query: 376 gagc 379 |||| Sbjct: 47117 gagc 47114 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 65812 atggagatgctgttggggatgcccatggcggtgagccc 65775 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 65746 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 65690
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 316 gtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttctt 375 |||||||||||| ||||| ||||||||||||||||||| ||| || || |||||||||| Sbjct: 10846 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 10905 Query: 376 gagc 379 |||| Sbjct: 10906 gagc 10909
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 319 ||||| |||||||| ||||||||| |||| |||||||| |||| || ||||||| Sbjct: 2060 atggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggtca 2001 Query: 320 gaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 |||||||| ||||||||||||||||| ||||||| ||| || ||| | | |||| | ||| Sbjct: 2000 gaggtgttggggtagagcagcatgtaggggaactcggcggggccgttcctgttcctcagc 1941 Query: 380 tgcgggtc 387 |||||||| Sbjct: 1940 tgcgggtc 1933
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 63.9 bits (32), Expect = 4e-07 Identities = 104/128 (81%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 319 ||||| |||||||| ||||||||| |||| |||||||| |||| || ||||||| Sbjct: 4658 atggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggtca 4599 Query: 320 gaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 |||||||| || |||||||||||||| ||||||| ||| || ||| | | |||| | ||| Sbjct: 4598 gaggtgttgggatagagcagcatgtaggggaactcggcggggccgttcctgttcctcagc 4539 Query: 380 tgcgggtc 387 |||||||| Sbjct: 4538 tgcgggtc 4531
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 63.9 bits (32), Expect = 4e-07 Identities = 104/128 (81%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggtcg 319 ||||| |||||||| ||||||||| |||| |||||||| |||| || ||||||| Sbjct: 2591 atggagatgctgttggggatgcccttggcagtgagccctgcggcggcgccactgtggtca 2532 Query: 320 gaggtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 |||||||| || |||||||||||||| ||||||| ||| || ||| | | |||| | ||| Sbjct: 2531 gaggtgttgggatagagcagcatgtaggggaactcggcggggccgttcctgttcctcagc 2472 Query: 380 tgcgggtc 387 |||||||| Sbjct: 2471 tgcgggtc 2464
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2442 atggagatgctgttggggatgcccatggcggtgagccc 2405 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 2376 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 2320
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2921 atggagatgctgttggggatgcccatggcggtgagccc 2884 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 2855 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 2799
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2915 atggagatgctgttggggatgcccatggcggtgagccc 2878 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 2849 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 2793
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 1328 atggagatgctgttggggatgcccatggcggtgagccc 1291 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 1262 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 1206
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2593 atggagatgctgttggggatgcccatggcggtgagccc 2556 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 2527 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 2471
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 2923 atggagatgctgttggggatgcccatggcggtgagccc 2886 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 2857 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 2801
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagccc 297 ||||| |||||||| ||||||||| ||||||||||||| Sbjct: 1493 atggagatgctgttggggatgcccatggcggtgagccc 1456 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgagc 379 ||||| ||||| ||||||||||| || | ||| |||||||| | |||||||||||| Sbjct: 1427 gtgttggggtacagcagcatgtacggcatcttcaccggcccgttccggttcttgagc 1371
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Minus Query: 268 gctgttcgggatgcccctggcggtgagcccc 298 |||||| ||||||||| |||||||||||||| Sbjct: 2752 gctgttggggatgcccatggcggtgagcccc 2722
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 385 gtccgagttcatggccaccacctgct 410 ||||| |||||||||||||||||||| Sbjct: 734989 gtccgggttcatggccaccacctgct 735014
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcg 301 ||||| |||||||| || |||||| |||| |||||||||||| Sbjct: 363 atggagatgctgttgggaatgcccatggcagtgagcccctcg 322
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Minus Query: 260 atggatatgctgttcgggatgcccctggcggtgagcccctcggcct 305 ||||| |||||||| || |||||| |||| || ||||||||||||| Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaagcccctcggcct 2851
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ccttattgccttaattattca 151 ||||||||||||||||||||| Sbjct: 136193 ccttattgccttaattattca 136213 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ccttattgccttaattattca 151 ||||||||||||||||||||| Sbjct: 94214 ccttattgccttaattattca 94234
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 aaacaagggattttttctgca 58 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 254 aatcaaatggatatgctgttcgggatgcc 282 ||||||||||| |||||||| |||||||| Sbjct: 2776 aatcaaatggagatgctgttggggatgcc 2748
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 gcaaaacaagggattttttct 55 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ccttattgccttaattattca 151 ||||||||||||||||||||| Sbjct: 21745017 ccttattgccttaattattca 21745037 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ccttattgccttaattattca 151 ||||||||||||||||||||| Sbjct: 21703038 ccttattgccttaattattca 21703058
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggagggaacatcacaccatc 20 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 40.1 bits (20), Expect = 5.8 Identities = 47/56 (83%) Strand = Plus / Minus Query: 323 gtgtttgggtagagcagcatgtatgggaacttggccggcccggtgcggttcttgag 378 ||||| |||||||| |||||||| ||||| || || ||||| | ||||||||||| Sbjct: 1486 gtgttggggtagagtagcatgtaggggaattttgctggcccattccggttcttgag 1431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,808,501 Number of Sequences: 3902068 Number of extensions: 2808501 Number of successful extensions: 54212 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53996 Number of HSP's gapped (non-prelim): 214 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)