ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03g09 |
|---|---|
| Clone Library Name | barley_pub |
>POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3022 Score = 32.0 bits (71), Expect = 0.70 Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 9/108 (8%) Frame = -1 Query: 430 NPIYSRP-------PETQKAAATPFREEKRGYHVDSLVQNTSAAVNLPFRNLATSGEKPS 272 +P Y P P T+ A P R KR +D N SAA+ L + KP Sbjct: 2310 DPTYEPPAVHGCALPPTRPAPVPPPRR-KRTIKLDG--SNVSAAL-LALAERSFPSTKPE 2365 Query: 271 DPGVAALSSYKDVSLTRSIQPIKADLSDTESGDSMP--EIQDGDPDSD 134 G ++ + + P + SD ES SMP E + GDPD D Sbjct: 2366 GTGTSSSGVGTESTAESGDSPETGEESDVESYSSMPPLEGEPGDPDLD 2413
>PTHR_RABIT (Q9GLC7) Parathyroid hormone-related protein precursor (PTH-rP)| (PTHrP) [Contains: Osteostatin] Length = 177 Score = 31.2 bits (69), Expect = 1.2 Identities = 24/95 (25%), Positives = 37/95 (38%) Frame = -1 Query: 418 SRPPETQKAAATPFREEKRGYHVDSLVQNTSAAVNLPFRNLATSGEKPSDPGVAALSSYK 239 S+P K A F + G + L Q T+ + L T G+K K Sbjct: 82 SKPAANTKNHAVRFGSDDEGRY---LTQETNKVEPYKEQPLKTPGKKKKGKPGKRKEQEK 138 Query: 238 DVSLTRSIQPIKADLSDTESGDSMPEIQDGDPDSD 134 TRS P+ A +GD + +I + +P+ D Sbjct: 139 KKRRTRSAWPLSAGAGSGLAGDHLSDISEPEPELD 173
>DNAK_YERPS (Q66ET0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 636 Score = 30.8 bits (68), Expect = 1.6 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ SG K + V A L S + + RSI+P+K L D +G S+ +IQD Sbjct: 281 VNLPYITADGSGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIQD 336
>DNAK_YERPE (Q8ZIM7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 636 Score = 30.8 bits (68), Expect = 1.6 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ SG K + V A L S + + RSI+P+K L D +G S+ +IQD Sbjct: 281 VNLPYITADGSGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIQD 336
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Frame = -1 Query: 406 ETQKAAATPFREEKRGYH-VDSLVQNTSAAVNLPFRNLATSGEKPSDPGVAALSSYKDVS 230 + ++ AA+P + KR V S ++T A + + S G S + V+ Sbjct: 634 KVKEEAASPLKNTKRQREKVASDTEDTDRATSKKTKTQEISRPNSPSEGEGESSDSRSVN 693 Query: 229 LTRSIQPIKADLSDTESGDSMPEIQDGDPDSD 134 S P D + + S+P QD + DSD Sbjct: 694 DEGSSDPKDIDQDNRSTSPSIPSPQDNESDSD 725
>GT4_ARATH (Q9M9U0) Putative glycosyltransferase 4 (EC 2.4.-.-) (AtGT4)| Length = 513 Score = 30.0 bits (66), Expect = 2.7 Identities = 24/91 (26%), Positives = 42/91 (46%) Frame = -1 Query: 418 SRPPETQKAAATPFREEKRGYHVDSLVQNTSAAVNLPFRNLATSGEKPSDPGVAALSSYK 239 + PP+ + + E R + S V +T V LP +++ + P +A + S Sbjct: 100 AEPPKADVSPNATYTLEPRIAEIPSDVHSTDL-VELPKADISPNATYTLGPRIAEIPS-- 156 Query: 238 DVSLTRSIQPIKADLSDTESGDSMPEIQDGD 146 D LT ++P KAD+S + P+I + D Sbjct: 157 DSHLTDLLEPPKADISPNATYTLGPKITNWD 187
>VCAP_HHV6U (P17887) Major capsid protein (MCP)| Length = 1345 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = -2 Query: 282 KNHLTQVL----LL*AAIKMSL*PAPFSPSRLTCLIQSRETRCQRYKTVTRIPTIELPS 118 KN T+VL ++ I + L P F +R +++ +T CQ+Y +I T L S Sbjct: 544 KNRATEVLCTPRIMIGNIPLPLAPVSFHEARTNQILEHAKTNCQKYDFTLKIVTESLTS 602
>CNC_DROME (P20482) Segmentation protein cap'n'collar| Length = 1383 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = -1 Query: 346 SLVQNTSAAVNLPFRNLATSGEKPSDPGVAALSSYKDVSLTRSIQPIKADLSDTESGDSM 167 S SAA N+ ++ K SDP ++ S +KD + + A + D E ++ Sbjct: 371 SYASGNSAATNV--KSKPEDETKSSDPSISESSGFKDTDVNAENEASAASVDDIEKLKAL 428 Query: 166 PEI-QDGDPDSD 134 E+ QD D +++ Sbjct: 429 EELQQDKDKNNE 440
>DNAK1_PHOPR (Q6LUA7) Chaperone protein dnaK 1 (Heat shock protein 70 1) (Heat| shock 70 kDa protein 1) (HSP70 1) Length = 639 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RS++P+K LSD +G S+ EI D Sbjct: 281 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVQRSLEPLKVALSD--AGLSVSEITD 336
>SYA_BARBA (P70865) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 886 Score = 29.3 bits (64), Expect = 4.5 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Frame = +2 Query: 59 MPRDM--LIKMGKKKQGYTFIL--------EGSSIVGIRVTVLYLWHRVSRLCIRQVSLD 208 +P+D+ L+ GKKK G + +GS++VG+ + + V + I V+L Sbjct: 793 LPKDLKALVDSGKKKIGSGVVAFISVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLG 852 Query: 209 GLNGAG*RDIFIAAQS 256 G G G RD+ A S Sbjct: 853 GQGGGGRRDMAQAGGS 868
>POLG_HCVNZ (Q81258) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3020 Score = 28.9 bits (63), Expect = 5.9 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Frame = -1 Query: 394 AAATPFREEKRGYHVDSLVQNTSAAVNLPFRNLATSGEKPSDPGVAALSSYKDVSLTRSI 215 A P KR +D N SAA+ + KP + ++ S T + Sbjct: 2326 APPVPPPRRKRTIQLDG--SNVSAAL-AALAEKSFPSSKPQEENSSSSGVDTQSSTTSKV 2382 Query: 214 QPIKADLSDTESGDSMP--EIQDGDPD 140 P SD+ES SMP E + GDPD Sbjct: 2383 PPSPGGESDSESCSSMPPLEGEPGDPD 2409
>SOX4_MOUSE (Q06831) Transcription factor SOX-4| Length = 440 Score = 28.9 bits (63), Expect = 5.9 Identities = 25/86 (29%), Positives = 37/86 (43%) Frame = -1 Query: 400 QKAAATPFREEKRGYHVDSLVQNTSAAVNLPFRNLATSGEKPSDPGVAALSSYKDVSLTR 221 ++AA P E Y V + T AA + P LAT + P+D V + Y SL Sbjct: 215 EQAALLPLGEPTAVYKVRTPQLATPAASSSPSSALATPAKHPADKKVKHV--YLFGSLGA 272 Query: 220 SIQPIKADLSDTESGDSMPEIQDGDP 143 S P+ + + D + +DG P Sbjct: 273 SASPVGGLGACADPSDPLGLYEDGGP 298
>PROB_SYNP6 (Q5N0T0) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 370 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 92 KKQGYTFILEGSSIVGIRVTVLYLWHRVSRLCIRQ 196 ++QGY +L S VG+ T L L R SR+ RQ Sbjct: 41 RRQGYNVVLVSSGAVGVGCTRLGLRDRPSRIAQRQ 75
>DNAK_SHISS (Q3Z601) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 281 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIDD 336
>DNAK_SHIFL (Q83MH5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 281 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIDD 336
>DNAK_SHIDS (Q32KA5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 281 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIDD 336
>DNAK_SHIBS (Q326K7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 281 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIDD 336
>DNAK_SALPA (Q5PDJ5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 281 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIND 336
>DNAK_SALCH (Q57TP3) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 281 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIND 336
>HRP3_SCHPO (O14139) Chromodomain helicase hrp3 (EC 3.6.1.-) (ATP-dependent| helicase hrp3) Length = 1388 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/82 (24%), Positives = 37/82 (45%) Frame = -1 Query: 433 SNPIYSRPPETQKAAATPFREEKRGYHVDSLVQNTSAAVNLPFRNLATSGEKPSDPGVAA 254 S+P S +TQ T R + +V S Q +A P ++ S +KPS Sbjct: 1209 SSPAISTNGKTQPKKQTANRRQSGKPNVKS-AQKIESATRTPSPAISESRKKPSSKDTKI 1267 Query: 253 LSSYKDVSLTRSIQPIKADLSD 188 + ++ S +++ P+K++ D Sbjct: 1268 ETPSREQSRSQTASPVKSEKDD 1289
>ZO2_HUMAN (Q9UDY2) Tight junction protein ZO-2 (Zonula occludens 2 protein)| (Zona occludens 2 protein) (Tight junction protein 2) Length = 1190 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -1 Query: 418 SRPPETQKAAATPFREEKRGYHVDS 344 SRPPE QKA + P+++ + Y D+ Sbjct: 1137 SRPPEPQKAPSRPYQDTRGSYGSDA 1161
>DNAK_SALTY (Q56073) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 280 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIND 335
>DNAK_SALTI (Q8Z9R1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 280 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIND 335
>DNAK_ECOLI (P0A6Y8) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 280 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIDD 335
>DNAK_ECOL6 (P0A6Y9) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 280 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIDD 335
>DNAK_ECO57 (P0A6Z0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ +G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 280 VNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD--AGLSVSDIDD 335
>DNAK_BUCAI (O32464) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 637 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = -1 Query: 319 VNLPFRNLATSGEKPSDPGV--AALSSYKDVSLTRSIQPIKADLSDTESGDSMPEIQD 152 VNLP+ ++G K + V A L S + + RSI+P+K L D +G S+ +I D Sbjct: 281 VNLPYITADSNGPKHLNIKVTRAKLESLVEDLILRSIEPLKVALKD--AGLSVTDIND 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,403,170 Number of Sequences: 219361 Number of extensions: 1332405 Number of successful extensions: 3704 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3704 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
