ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03g09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450082.1| Oryza sativa (japonica cultivar-group), mRNA Length = 546 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Plus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 1 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 60 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 61 gaaggaggctcaata 75
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Plus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 56425 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 56484 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 56485 gaaggaggctcaata 56499
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Plus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 55930 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 55989 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 55990 gaaggaggctcaata 56004
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Plus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 55930 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 55989 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 55990 gaaggaggctcaata 56004
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Minus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 20579037 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 20578978 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 20578977 gaaggaggctcaata 20578963
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Minus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 1477719 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 1477660 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 1477659 gaaggaggctcaata 1477645
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1512_E04 Length = 157848 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Minus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 95832 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 95773 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 95772 gaaggaggctcaata 95758
>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0018I03 Length = 145818 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Minus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 5963 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 5904 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 5903 gaaggaggctcaata 5889
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Minus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 20505251 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 20505192 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 20505191 gaaggaggctcaata 20505177
>emb|AL731738.6|CNS08C7N Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143618 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Plus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 14196 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 14255 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 14256 gaaggaggctcaata 14270
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 61.9 bits (31), Expect = 2e-06 Identities = 62/75 (82%) Strand = Plus / Plus Query: 59 atgccaagggatatgctgataaagatgggcnnnnnnnngcaagggtatacgtttatcctt 118 ||||| |||||| ||||||||||||||| | ||||||||||| |||||||||| Sbjct: 55880 atgccgagggatctgctgataaagatggacgaaaaaaggcaagggtatatgtttatcctt 55939 Query: 119 gaaggaagctcaata 133 |||||| |||||||| Sbjct: 55940 gaaggaggctcaata 55954
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 gtattctgaaccagagaatcaa 351 |||||||||||||||||||||| Sbjct: 4708508 gtattctgaaccagagaatcaa 4708487
>gb|AC148293.6| Medicago truncatula clone mth2-16c13, complete sequence Length = 117793 Score = 42.1 bits (21), Expect = 1.5 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 18 tagataaa-ctgagacatgtagtatatag 45 |||||||| |||||||||||||||||||| Sbjct: 81015 tagataaagctgagacatgtagtatatag 80987
>gb|AC134468.4| Mus musculus BAC clone RP23-97J21 from chromosome 12, complete sequence Length = 234400 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 acctgggtcagatggttttt 282 |||||||||||||||||||| Sbjct: 121048 acctgggtcagatggttttt 121067
>gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, complete sequence Length = 183447 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 atcagacaagtcagccttgatggg 211 ||||||||||||||||||| |||| Sbjct: 121652 atcagacaagtcagccttgttggg 121675
>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete sequence Length = 209619 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 tcagagcagcaacacctggg 269 |||||||||||||||||||| Sbjct: 133612 tcagagcagcaacacctggg 133631
>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete sequence Length = 209280 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 tcagagcagcaacacctggg 269 |||||||||||||||||||| Sbjct: 203291 tcagagcagcaacacctggg 203310
>gb|AC019342.8|AC019342 Homo sapiens, clone RP11-21D15, complete sequence Length = 79673 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggctttctgtgtttcaggtg 411 |||||||||||||||||||| Sbjct: 75762 ggctttctgtgtttcaggtg 75743
>dbj|AK034808.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430041K17 product:unclassifiable, full insert sequence Length = 3180 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 tcagagcagcaacacctggg 269 |||||||||||||||||||| Sbjct: 27 tcagagcagcaacacctggg 46
>gb|AC025271.7|AC025271 Homo sapiens chromosome 15 clone CTD-2515H24 map 15q21.3, complete sequence Length = 191330 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 cttagataaactgagacatg 35 |||||||||||||||||||| Sbjct: 174237 cttagataaactgagacatg 174218
>gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, complete sequence Length = 207974 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 atcagacaagtcagccttgatggg 211 ||||||||||||||||||| |||| Sbjct: 26010 atcagacaagtcagccttgttggg 25987
>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5, complete sequence Length = 178961 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ttaacagctgcgcttgtatt 334 |||||||||||||||||||| Sbjct: 25922 ttaacagctgcgcttgtatt 25941
>gb|AC138112.4| Mus musculus BAC clone RP24-291E8 from 3, complete sequence Length = 173988 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 ataaactgagacatgtagta 40 |||||||||||||||||||| Sbjct: 80502 ataaactgagacatgtagta 80521 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,447,798 Number of Sequences: 3902068 Number of extensions: 3447798 Number of successful extensions: 58373 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58264 Number of HSP's gapped (non-prelim): 109 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
