Clone Name | rbastl03g05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC107780.12| Mus musculus chromosome 8, clone RP23-61O10, complete sequence Length = 244047 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 ctgtacaaaattgccatataaa 243 |||||||||||||||||||||| Sbjct: 174062 ctgtacaaaattgccatataaa 174041
>emb|AL158163.11| Human DNA sequence from clone RP11-348N5 on chromosome 10 Contains the 3' end of the PDCD4 gene for programmed cell death 4 (neoplastic transformation inhibitor)(H731, MGC33046, MGC33047), a novel gene (LOC92482), the SHOC2 gene for soc-2 suppressor of clear homolog (C. elegans)(SOC2, SUR8, SOC-2, SUR-8, KIAA0862, SIAA0862), ribosomal protein L13a pseudogene 6 (RPL13AP6), the ADRA2A gene for adrenergic, alpha-2A-, receptor (alpha-2AAR subtype C10)(ADRA2, ADRAR, ZNF32, ADRA2R) and two CpG islands, complete sequence Length = 204908 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 ctacaagtaacattcttctga 42 ||||||||||||||||||||| Sbjct: 152592 ctacaagtaacattcttctga 152612
>gb|AC080003.6| Homo sapiens BAC clone RP11-344F9 from 4, complete sequence Length = 187936 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 tgtgaacacaaccaccaccac 209 ||||||||||||||||||||| Sbjct: 23561 tgtgaacacaaccaccaccac 23541
>ref|XM_631580.1| Dictyostelium discoideum AX4 hypothetical protein (DDB0187989), partial mRNA Length = 2040 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aacacaaccaccaccacaaca 213 ||||||||||||||||||||| Sbjct: 190 aacacaaccaccaccacaaca 210
>gb|AC160059.7| Mus musculus 6 BAC RP23-172L21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212292 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 aacacaaccaccaccacaaca 213 ||||||||||||||||||||| Sbjct: 202722 aacacaaccaccaccacaaca 202702
>gb|AC156286.8| Mus musculus 6 BAC RP24-285N17 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 180204 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aacacaaccaccaccacaaca 213 ||||||||||||||||||||| Sbjct: 137034 aacacaaccaccaccacaaca 137054
>gb|AC170761.3| Rhesus Macaque CHR5 BAC CH250-342J4 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 160607 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 ttgctacaagtaacattcttc 39 ||||||||||||||||||||| Sbjct: 37831 ttgctacaagtaacattcttc 37851
>gb|AC183608.3| Pan troglodytes BAC clone CH251-271E16 from chromosome 7, complete sequence Length = 138895 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 aaatgtcaacacagccatct 376 |||||||||||||||||||| Sbjct: 93346 aaatgtcaacacagccatct 93365
>gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, complete sequence Length = 217576 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 aattgccatataaatcagcaatcc 253 ||||||||||| |||||||||||| Sbjct: 144864 aattgccatatgaatcagcaatcc 144887
>gb|AC105958.11| Mus musculus chromosome 9, clone RP24-325P4, complete sequence Length = 195129 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acacaaccaccaccacaaca 213 |||||||||||||||||||| Sbjct: 150151 acacaaccaccaccacaaca 150132
>gb|AC034148.9| Homo sapiens BAC clone RP11-155B1 from 7, complete sequence Length = 170928 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 aattgccatataaatcagcaatcc 253 ||||||||||| |||||||||||| Sbjct: 1745 aattgccatatgaatcagcaatcc 1768
>gb|AC146014.2| Pan troglodytes BAC clone RP43-128N21 from 7, complete sequence Length = 178714 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gctacaagtaacattcttct 40 |||||||||||||||||||| Sbjct: 94636 gctacaagtaacattcttct 94655
>gb|AC002451.1| Homo sapiens BAC clone GS1-306C12 from 7, complete sequence Length = 157099 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gtacaaaattgccatataaa 243 |||||||||||||||||||| Sbjct: 31612 gtacaaaattgccatataaa 31593
>gb|AC006381.2| Homo sapiens BAC clone RP11-494A9 from 7, complete sequence Length = 146720 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gctacaagtaacattcttct 40 |||||||||||||||||||| Sbjct: 48199 gctacaagtaacattcttct 48218
>gb|AC111111.11| Mus musculus chromosome 3, clone RP23-201A9, complete sequence Length = 233326 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 aggaatcatagacacaatta 61 |||||||||||||||||||| Sbjct: 150091 aggaatcatagacacaatta 150072
>gb|AC152419.2| Pan troglodytes BAC clone RP43-4P10 from chromosome 7, complete sequence Length = 154622 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 aaatgtcaacacagccatct 376 |||||||||||||||||||| Sbjct: 51871 aaatgtcaacacagccatct 51890
>emb|AL626785.26| Mouse DNA sequence from clone RP23-220F20 on chromosome 11 Contains a novel gene, the 3' end of the Mmd gene for monocyte to macrophage differentiation-associated and the 3' end of the Hlf gene for hepatic leukemia factor, complete sequence Length = 172696 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtaacattcttctgaggaat 47 |||||||||||||||||||| Sbjct: 34063 gtaacattcttctgaggaat 34044
>dbj|AB225899.1| Aspergillus oryzae cDNA, contig sequence: AoEST2754 Length = 745 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 acaaccaccaccacaacaca 215 |||||||||||||||||||| Sbjct: 152 acaaccaccaccacaacaca 171
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 acaaccaccaccacaacaca 215 |||||||||||||||||||| Sbjct: 1427060 acaaccaccaccacaacaca 1427041
>gb|AC104187.2| Homo sapiens chromosome 3 clone RP11-424N24, complete sequence Length = 186052 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 accaccaccacaacacagtt 218 |||||||||||||||||||| Sbjct: 146240 accaccaccacaacacagtt 146221
>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199439 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acacaaccaccaccacaaca 213 |||||||||||||||||||| Sbjct: 126349 acacaaccaccaccacaaca 126330
>gb|AC079816.31| Mus musculus strain C57BL/6J chromosome 11 clone rp23-220f20, complete sequence Length = 172680 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtaacattcttctgaggaat 47 |||||||||||||||||||| Sbjct: 34132 gtaacattcttctgaggaat 34113
>gb|AC073435.26| Mus musculus strain C57BL/6J chromosome 9 clone rp23-383h20, complete sequence Length = 221953 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acacaaccaccaccacaaca 213 |||||||||||||||||||| Sbjct: 167868 acacaaccaccaccacaaca 167887
>emb|AL672068.13| Mouse DNA sequence from clone RP23-69M9 on chromosome X, complete sequence Length = 217917 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 tcagtccaagtaagaataccatat 119 |||||||||||| ||||||||||| Sbjct: 112201 tcagtccaagtatgaataccatat 112224 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 tcagtccaagtaagaataccatat 119 |||||||||||| ||||||||||| Sbjct: 16002 tcagtccaagtatgaataccatat 15979 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,234,632 Number of Sequences: 3902068 Number of extensions: 3234632 Number of successful extensions: 61784 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61738 Number of HSP's gapped (non-prelim): 46 length of query: 379 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 357 effective length of database: 17,147,199,772 effective search space: 6121550318604 effective search space used: 6121550318604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)