ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_415886.1| PREDICTED: Gallus gallus similar to KIAA1287 pr... 40 0.81
2ref|NM_001030722.1| Gallus gallus integrator complex subunit 2 (... 40 0.81
3emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in... 40 0.81
4emb|AJ719990.1| Gallus gallus mRNA for hypothetical protein, clo... 40 0.81
5gb|AC090677.13| Homo sapiens 12 BAC RP11-637N6 (Roswell Park Can... 40 0.81
6emb|CR522900.1| Gallus gallus finished cDNA, clone ChEST396a11 40 0.81
7gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP... 40 0.81
8ref|XM_640078.1| Dictyostelium discoideum hypothetical protein (... 38 3.2
9gb|AE017131.1| Yersinia pestis biovar Medievalis str. 91001 sect... 38 3.2
10gb|AC139883.8| Mus musculus chromosome 16, clone RP24-304O16, co... 38 3.2
11gb|AC150593.2| Bos taurus BAC CH240-105D16 (Children's Hospital... 38 3.2
12gb|AC133156.7| Mus musculus chromosome 15, clone RP24-291M22, co... 38 3.2
13gb|AC148824.5| Pan troglodytes BAC clone CH251-507H8 from chromo... 38 3.2
14gb|AE009952.1| Yersinia pestis KIM, complete genome 38 3.2
15gb|AC120418.10| Mus musculus chromosome 6, clone RP24-474I24, co... 38 3.2
16gb|AC122855.4| Mus musculus BAC clone RP23-120H20 from chromosom... 38 3.2
17gb|AC107312.9| Homo sapiens 3 BAC RP11-574E7 (Roswell Park Cance... 38 3.2
18gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome... 38 3.2
19gb|AC104073.3| Homo sapiens BAC clone RP11-328P23 from 7, comple... 38 3.2
20gb|AC073107.7| Homo sapiens BAC clone RP11-479O9 from 7, complet... 38 3.2
21gb|AC114501.1| Homo sapiens BAC clone RP11-667F9 from 7, complet... 38 3.2
22gb|AC104057.4| Homo sapiens BAC clone RP13-157F18 from 7, comple... 38 3.2
23gb|AC162930.5| Mus musculus BAC clone RP23-221B16 from chromosom... 38 3.2
24emb|AL603902.4| Human DNA sequence from clone RP11-167I10 on chr... 38 3.2
25emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 38 3.2
26gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome... 38 3.2
27emb|AJ414153.1| Yersinia pestis strain CO92 complete genome; seg... 38 3.2
28gb|AF494279.1| Chaetosphaeridium globosum mitochondrial DNA, com... 38 3.2
29gb|AC170732.3| Sorex araneus clone SA_Ba-167D21, complete sequence 38 3.2
30gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map... 38 3.2
31gb|AC157791.6| Mus musculus chromosome 3, clone RP24-176D22, com... 38 3.2
32gb|AC009054.8| Homo sapiens chromosome 16 clone RP11-252K23, com... 38 3.2
33gb|AC114265.2| Dictyostelium discoideum chromosome 2 map 4520461... 38 3.2
34dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 38 3.2
35gb|AC154461.2| Mus musculus BAC clone RP24-163I13 from 14, compl... 38 3.2
36gb|AC123682.13| Mus musculus chromosome 15, clone RP23-288J22, c... 38 3.2
37gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, com... 38 3.2
38emb|CR759951.21| Zebrafish DNA sequence from clone DKEY-256E7 in... 38 3.2
39emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on ch... 38 3.2
40gb|AC145305.4| Mus musculus BAC clone RP23-129K15 from 8, comple... 38 3.2
41gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosom... 38 3.2 
>ref|XM_415886.1| PREDICTED: Gallus gallus similar to KIAA1287 protein (LOC417641),
           mRNA
          Length = 1965

 Score = 40.1 bits (20), Expect = 0.81
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   ttggaatattttattccatc 25
           ||||||||||||||||||||
Sbjct: 920 ttggaatattttattccatc 901
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>ref|NM_001030722.1| Gallus gallus integrator complex subunit 2 (INTS2), mRNA
          Length = 5076

 Score = 40.1 bits (20), Expect = 0.81
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    ttggaatattttattccatc 25
            ||||||||||||||||||||
Sbjct: 4025 ttggaatattttattccatc 4006
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>emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in linkage group 2,
              complete sequence
          Length = 206746

 Score = 40.1 bits (20), Expect = 0.81
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 30     tatcattgctggaacaattattgt 53
              ||||| ||||||||||||||||||
Sbjct: 132351 tatcaatgctggaacaattattgt 132328
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>emb|AJ719990.1| Gallus gallus mRNA for hypothetical protein, clone 9c3
          Length = 5076

 Score = 40.1 bits (20), Expect = 0.81
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    ttggaatattttattccatc 25
            ||||||||||||||||||||
Sbjct: 4025 ttggaatattttattccatc 4006
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>gb|AC090677.13| Homo sapiens 12 BAC RP11-637N6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 60429

 Score = 40.1 bits (20), Expect = 0.81
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    agattttggaatattttattccat 24
            ||||||||||||||| ||||||||
Sbjct: 5120 agattttggaatattatattccat 5143
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>emb|CR522900.1| Gallus gallus finished cDNA, clone ChEST396a11
          Length = 999

 Score = 40.1 bits (20), Expect = 0.81
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   ttggaatattttattccatc 25
           ||||||||||||||||||||
Sbjct: 406 ttggaatattttattccatc 387
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>gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-3M10, complete
              sequence
          Length = 206093

 Score = 40.1 bits (20), Expect = 0.81
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     ttattgtttcttgcctgtttgtct 70
              |||||||| |||||||||||||||
Sbjct: 133425 ttattgttacttgcctgtttgtct 133448
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>ref|XM_640078.1| Dictyostelium discoideum hypothetical protein (DDB0168684), partial
            mRNA
          Length = 6063

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 3    attttggaatattttattc 21
            |||||||||||||||||||
Sbjct: 2481 attttggaatattttattc 2499
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>gb|AE017131.1| Yersinia pestis biovar Medievalis str. 91001 section 5 of 16 of the
             complete genome
          Length = 291847

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    tgctggaacaattattgtt 54
             |||||||||||||||||||
Sbjct: 83578 tgctggaacaattattgtt 83596
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>gb|AC139883.8| Mus musculus chromosome 16, clone RP24-304O16, complete sequence
          Length = 138043

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     gattttggaatattttatt 20
             |||||||||||||||||||
Sbjct: 56098 gattttggaatattttatt 56116
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>gb|AC150593.2| Bos taurus  BAC CH240-105D16 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 151783

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     attttggaatattttattc 21
             |||||||||||||||||||
Sbjct: 32473 attttggaatattttattc 32491
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>gb|AC133156.7| Mus musculus chromosome 15, clone RP24-291M22, complete sequence
          Length = 151577

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      ttggaatattttattccat 24
              |||||||||||||||||||
Sbjct: 131014 ttggaatattttattccat 130996
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>gb|AC148824.5| Pan troglodytes BAC clone CH251-507H8 from chromosome 7, complete
              sequence
          Length = 189932

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      gattttggaatattttatt 20
              |||||||||||||||||||
Sbjct: 120633 gattttggaatattttatt 120651
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      tgctggaacaattattgtt 54
               |||||||||||||||||||
Sbjct: 1269711 tgctggaacaattattgtt 1269693
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>gb|AC120418.10| Mus musculus chromosome 6, clone RP24-474I24, complete sequence
          Length = 177307

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 30     tatcattgctggaacaattattgtttc 56
              |||||||||||||||| ||| ||||||
Sbjct: 155979 tatcattgctggaacagttaatgtttc 156005
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>gb|AC122855.4| Mus musculus BAC clone RP23-120H20 from chromosome 14, complete
             sequence
          Length = 202424

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    ttcttgcctgtttgtctac 72
             |||||||||||||||||||
Sbjct: 54302 ttcttgcctgtttgtctac 54320
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>gb|AC107312.9| Homo sapiens 3 BAC RP11-574E7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138925

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      tttggaatattttattcca 23
              |||||||||||||||||||
Sbjct: 121918 tttggaatattttattcca 121900
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>gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome 14, complete
            sequence
          Length = 179789

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   ttcttgcctgtttgtctac 72
            |||||||||||||||||||
Sbjct: 8562 ttcttgcctgtttgtctac 8544
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>gb|AC104073.3| Homo sapiens BAC clone RP11-328P23 from 7, complete sequence
          Length = 178670

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     gattttggaatattttatt 20
             |||||||||||||||||||
Sbjct: 26770 gattttggaatattttatt 26788
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>gb|AC073107.7| Homo sapiens BAC clone RP11-479O9 from 7, complete sequence
          Length = 194178

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     gattttggaatattttatt 20
             |||||||||||||||||||
Sbjct: 43339 gattttggaatattttatt 43357
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>gb|AC114501.1| Homo sapiens BAC clone RP11-667F9 from 7, complete sequence
          Length = 134339

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      gattttggaatattttatt 20
              |||||||||||||||||||
Sbjct: 120379 gattttggaatattttatt 120361
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>gb|AC104057.4| Homo sapiens BAC clone RP13-157F18 from 7, complete sequence
          Length = 196523

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      gattttggaatattttatt 20
              |||||||||||||||||||
Sbjct: 123717 gattttggaatattttatt 123735
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>gb|AC162930.5| Mus musculus BAC clone RP23-221B16 from chromosome 8, complete
           sequence
          Length = 222939

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 2   gattttggaatattttatt 20
           |||||||||||||||||||
Sbjct: 444 gattttggaatattttatt 426
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>emb|AL603902.4| Human DNA sequence from clone RP11-167I10 on chromosome 6 Contains the
             3' end of the TRDN gene for triadin (TDN, TRIADIN),
             complete sequence
          Length = 158024

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     tggaatattttattccatc 25
             |||||||||||||||||||
Sbjct: 45670 tggaatattttattccatc 45652
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      tgctggaacaattattgtt 54
               |||||||||||||||||||
Sbjct: 1263553 tgctggaacaattattgtt 1263535
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>gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome 12, complete sequence
          Length = 181828

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 50    ttgtttcttgcctgtttgtctac 72
             ||||||||||||||||| |||||
Sbjct: 78548 ttgtttcttgcctgtttctctac 78526
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>emb|AJ414153.1| Yersinia pestis strain CO92 complete genome; segment 13/20
          Length = 258050

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     tgctggaacaattattgtt 54
              |||||||||||||||||||
Sbjct: 218447 tgctggaacaattattgtt 218465
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>gb|AF494279.1| Chaetosphaeridium globosum mitochondrial DNA, complete  genome
          Length = 56574

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     ttttggaatattttattcc 22
             |||||||||||||||||||
Sbjct: 52300 ttttggaatattttattcc 52282
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>gb|AC170732.3| Sorex araneus clone SA_Ba-167D21, complete sequence
          Length = 160765

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 48    tattgtttcttgcctgtttgtct 70
             ||||||||||||||||| |||||
Sbjct: 36885 tattgtttcttgcctgtctgtct 36863
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>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete
            sequence
          Length = 91863

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 3    attttggaatattttattc 21
            |||||||||||||||||||
Sbjct: 5328 attttggaatattttattc 5346
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>gb|AC157791.6| Mus musculus chromosome 3, clone RP24-176D22, complete sequence
          Length = 179897

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      agattttggaatattttat 19
              |||||||||||||||||||
Sbjct: 120678 agattttggaatattttat 120696
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>gb|AC009054.8| Homo sapiens chromosome 16 clone RP11-252K23, complete sequence
          Length = 157113

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     ttggaatattttattccat 24
             |||||||||||||||||||
Sbjct: 98995 ttggaatattttattccat 98977
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>gb|AC114265.2| Dictyostelium discoideum chromosome 2 map 4520461-4544940 strain AX4,
            complete sequence
          Length = 24479

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 3    attttggaatattttattc 21
            |||||||||||||||||||
Sbjct: 2810 attttggaatattttattc 2828
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 35     ttgctggaacaattattgtttct 57
              ||||||||||| |||||||||||
Sbjct: 151149 ttgctggaacatttattgtttct 151171
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>gb|AC154461.2| Mus musculus BAC clone RP24-163I13 from 14, complete sequence
          Length = 202273

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    ttcttgcctgtttgtctac 72
             |||||||||||||||||||
Sbjct: 30070 ttcttgcctgtttgtctac 30088
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>gb|AC123682.13| Mus musculus chromosome 15, clone RP23-288J22, complete sequence
          Length = 170303

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      ttggaatattttattccat 24
              |||||||||||||||||||
Sbjct: 167533 ttggaatattttattccat 167551
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>gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, complete sequence
          Length = 203185

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 30     tatcattgctggaacaattattgtttc 56
              |||||||||||||||| ||| ||||||
Sbjct: 155329 tatcattgctggaacagttaatgtttc 155303
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>emb|CR759951.21| Zebrafish DNA sequence from clone DKEY-256E7 in linkage group 1,
            complete sequence
          Length = 120721

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    ttttggaatattttattcc 22
            |||||||||||||||||||
Sbjct: 8715 ttttggaatattttattcc 8733
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>emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on chromosome 14, complete
              sequence
          Length = 201441

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 54     ttcttgcctgtttgtctac 72
              |||||||||||||||||||
Sbjct: 199222 ttcttgcctgtttgtctac 199240
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>gb|AC145305.4| Mus musculus BAC clone RP23-129K15 from 8, complete sequence
          Length = 196153

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      gattttggaatattttatt 20
              |||||||||||||||||||
Sbjct: 117086 gattttggaatattttatt 117104
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>gb|AC163644.4| Mus musculus BAC clone RP24-394I24 from chromosome 16, complete sequence
          Length = 177627

 Score = 38.2 bits (19), Expect = 3.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      gattttggaatattttatt 20
              |||||||||||||||||||
Sbjct: 109775 gattttggaatattttatt 109793


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,108,798
Number of Sequences: 3902068
Number of extensions: 1108798
Number of successful extensions: 81730
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81639
Number of HSP's gapped (non-prelim): 91
length of query: 78
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 57
effective length of database: 17,151,101,840
effective search space: 977612804880
effective search space used: 977612804880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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