ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S6A19_PONPY (Q5R6J1) Sodium-dependent neutral amino acid transpo... 29 4.9
2CCG1_MOUSE (O70578) Voltage-dependent calcium channel gamma-1 su... 29 4.9
3ADA2B_CAVPO (Q60475) Alpha-2B adrenergic receptor (Alpha-2B adre... 29 6.4
4NHR77_CAEEL (O02316) Nuclear hormone receptor family member nhr-77 28 8.4
5NH174_CAEEL (O17748) Nuclear hormone receptor family member nhr-174 28 8.4

>S6A19_PONPY (Q5R6J1) Sodium-dependent neutral amino acid transporter B(0)|
           (System B(0) neutral amino acid transporter) (B(0)AT1)
           (Solute carrier family 6 member 19)
          Length = 634

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = -1

Query: 454 FVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENHVVWL 317
           + WY      +  I     ++W  ++C+A  W+ L +  I+ + T   VV++
Sbjct: 174 YFWYRETLNISTSISDSGSIQWRMLLCLACAWSVLYMCTIRGIETTGKVVYI 225



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>CCG1_MOUSE (O70578) Voltage-dependent calcium channel gamma-1 subunit|
           (Dihydropyridine-sensitive L-type, skeletal muscle
           calcium channel gamma subunit)
          Length = 223

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 239 IKHYINWSAACKLTSIHLVSKGILLLVRFSI 147
           I+HY +WS AC   +  L+  G L L+ FS+
Sbjct: 175 IEHYYSWSFACACAAFILLFLGGLFLLLFSL 205



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>ADA2B_CAVPO (Q60475) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor)
          Length = 448

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
 Frame = +1

Query: 157 LTSRRIPFDTKWMLVNLQAADQLM*CLIL--------------WKIFCR*LFYVSTMVQG 294
           LTSR +P      LV+L AAD L+  LI+              W+ +C    Y++  V  
Sbjct: 38  LTSRSLPAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFWRTWCE--VYLALDVLF 95

Query: 295 CTCSLV 312
           CT S+V
Sbjct: 96  CTSSIV 101



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>NHR77_CAEEL (O02316) Nuclear hormone receptor family member nhr-77|
          Length = 362

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 103 CGFLQYPENVIFHLRGLLIKYCASFF 26
           C   ++P NV  H  GL+   CA+FF
Sbjct: 11  CPVCEFPSNVELHFGGLVCGACAAFF 36



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>NH174_CAEEL (O17748) Nuclear hormone receptor family member nhr-174|
          Length = 382

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 103 CGFLQYPENVIFHLRGLLIKYCASFF 26
           C   ++P NV  H  GL+   CA+FF
Sbjct: 65  CPVCEFPSNVELHFGGLVCGACAAFF 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,203,248
Number of Sequences: 219361
Number of extensions: 1390442
Number of successful extensions: 2485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2485
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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