ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03g01 |
|---|---|
| Clone Library Name | barley_pub |
>UBIP1_MOUSE (Q811S7) Upstream-binding protein 1 (Nuclear factor 2d9) (NF2d9)| Length = 540 Score = 32.7 bits (73), Expect = 0.45 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = -2 Query: 237 NPISTDNSSSPVKCSMPVDNSSSPVHQ 157 +P T SS P CS+P NSSSP HQ Sbjct: 326 SPAPTFTSSQPSTCSVPDSNSSSPNHQ 352
>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing| protein 6) (Fragment) Length = 608 Score = 32.3 bits (72), Expect = 0.59 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = -2 Query: 312 QIHACRKHPSRKIVCLSCRI----PWHLRNPISTDNSSSPVKC 196 Q+H C ++P R C C P LRN + T +S P KC Sbjct: 502 QMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKC 544
>BGLR_CERAE (O77695) Beta-glucuronidase precursor (EC 3.2.1.31) (Fragment)| Length = 648 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -2 Query: 192 MPVDNSSSPVHQDWKLS*AS*VGLGWVWSQRDWKALYNWSLNL 64 MPV +S + + QDW+L +GWVW +R+ W+ +L Sbjct: 74 MPVPSSFNDISQDWRLR----HFVGWVWYEREVILPERWTQDL 112
>BGLR_PONPY (Q5R5N6) Beta-glucuronidase precursor (EC 3.2.1.31)| Length = 651 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -2 Query: 192 MPVDNSSSPVHQDWKLS*AS*VGLGWVWSQRDWKALYNWSLNL 64 MPV +S + + QDW+L +GWVW +R+ W+ +L Sbjct: 77 MPVPSSFNDISQDWRLR----HFVGWVWYEREVILPERWTQDL 115
>BGLR_HUMAN (P08236) Beta-glucuronidase precursor (EC 3.2.1.31) (Beta-G1)| Length = 651 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -2 Query: 192 MPVDNSSSPVHQDWKLS*AS*VGLGWVWSQRDWKALYNWSLNL 64 MPV +S + + QDW+L +GWVW +R+ W+ +L Sbjct: 77 MPVPSSFNDISQDWRLR----HFVGWVWYEREVILPERWTQDL 115
>POP2_SCHPO (O14170) WD-repeat protein pop2 (Proteolysis factor sud1)| Length = 703 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -2 Query: 225 TDNSSSPVKCSMPVDNSSSP 166 TDNSSS + S+P+ NSSSP Sbjct: 8 TDNSSSRINSSVPLINSSSP 27
>MURA2_THETN (Q8R9G7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 (EC| 2.5.1.7) (Enoylpyruvate transferase 2) (UDP-N-acetylglucosamine enolpyruvyl transferase 2) (EPT 2) Length = 417 Score = 29.3 bits (64), Expect = 5.0 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%) Frame = +2 Query: 197 HLTGLEELSVEI----GFLRCHGMRQDKHTIFLE 286 HL GL++L VEI G++RC G+R + I L+ Sbjct: 126 HLKGLKKLGVEIEESYGYIRCKGVRVRGNEIHLD 159
>SCF_SHEEP (P79368) Kit ligand precursor (C-kit ligand) (Stem cell factor)| (SCF) (Mast cell growth factor) (MGF) (Fragment) Length = 267 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 220 VCRNRVSEVPRDATRQAHNLPRGVLST 300 +CRNRV++ +D T+ NLP+ + T Sbjct: 28 ICRNRVTDDVKDVTKLVANLPKDYMIT 54
>YJ89_YEAST (P47156) Hypothetical 85.0 kDa protein in STE24-ATP2 intergenic| region Length = 728 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -2 Query: 342 GTLFLDFDGDQIHACRK--HPSRKIVCLSCRIPWHL 241 G+ F + D D CRK P R I+C SC P+H+ Sbjct: 227 GSDFEEDDDDACIVCRKTNDPKRTILCDSCDKPFHI 262
>STAR5_PONPY (Q5R8P9) StAR-related lipid transfer protein 5 (StARD5) (START| domain-containing protein 5) Length = 213 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 262 LSHPVAPQKPDFYRQFFKPCQVF 194 + HP+ P KP F R F PC F Sbjct: 137 VEHPLCPPKPGFVRGFNHPCGCF 159
>STAR5_MOUSE (Q9EPQ7) StAR-related lipid transfer protein 5 (StARD5) (START| domain-containing protein 5) Length = 213 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 262 LSHPVAPQKPDFYRQFFKPCQVF 194 + HP+ P KP F R F PC F Sbjct: 137 VEHPLCPPKPGFVRGFNHPCGCF 159
>STAR5_HUMAN (Q9NSY2) StAR-related lipid transfer protein 5 (StARD5) (START| domain-containing protein 5) Length = 213 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 262 LSHPVAPQKPDFYRQFFKPCQVF 194 + HP+ P KP F R F PC F Sbjct: 137 VEHPLCPPKPGFVRGFNHPCGCF 159
>SCF_CAPHI (Q95M19) Kit ligand precursor (C-kit ligand) (Stem cell factor)| (SCF) (Mast cell growth factor) (MGF) Length = 274 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 220 VCRNRVSEVPRDATRQAHNLPRGVLST 300 +CRNRV++ +D T+ NLP+ + T Sbjct: 28 ICRNRVTDDVKDVTKLVANLPKDYMIT 54
>PHF8_MOUSE (Q80TJ7) PHD finger protein 8| Length = 1023 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 116 QPNPTQEAQDNFQSWWTGLEELSTGIEHLTGLEELSVEIGFLRCHGMRQDKHTIF 280 Q + + A + Q+WWTG +E S+G +GL +S R G R K + Sbjct: 732 QSSSSSPATSSLQAWWTGGQERSSG-SSSSGLGTVSSSPASQRTPGKRPIKRPAY 785 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,676,292 Number of Sequences: 219361 Number of extensions: 1500079 Number of successful extensions: 3540 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3436 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3534 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
