ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104411.1| Zea mays PCO124128 mRNA sequence 172 7e-40
2gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome... 161 3e-36
3gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome... 161 3e-36
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
5gb|AF344453.1|AF344453 Oryza sativa SET1 (SET1) mRNA, complete cds 161 3e-36
6dbj|AK102379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
7dbj|AK059336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 161 3e-36
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 107 3e-20
10gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare str... 107 3e-20
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
12ref|NM_191045.1| Oryza sativa (japonica cultivar-group), predic... 54 4e-04
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
14dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
15dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
16dbj|AK065227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
17ref|NM_101640.1| Arabidopsis thaliana SUVH7 (SU(VAR)3-9 HOMOLOG ... 52 0.002
18ref|NM_128034.2| Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21... 52 0.002
19gb|AC007266.5| Arabidopsis thaliana chromosome 2 clone F27A10 ma... 52 0.002
20gb|AF344451.1|AF344451 Arabidopsis thaliana SUVH8 (SUVH8) gene, ... 52 0.002
21gb|AF344450.1|AF344450 Arabidopsis thaliana SUVH7 (SUVH7) mRNA, ... 52 0.002
22gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thali... 52 0.002
23emb|CR847981.15| Zebrafish DNA sequence from clone CH211-195H23 ... 46 0.10
24gb|AY093419.1| Zea mays SET domain protein 105 (set105) mRNA, co... 44 0.41
25gb|AF545813.1| Zea mays SET domain protein 113 (sdg113) mRNA, co... 44 0.41
26gb|AY596552.1| Saccharum officinarum clone SCCCRZ2001G10, comple... 44 0.41
27gb|AY112212.1| Zea mays CL3507_2 mRNA sequence 44 0.41
28gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Can... 42 1.6
29gb|AC170189.2| Mus musculus BAC clone RP23-103L12 from chromosom... 40 6.4
30ref|NM_196119.1| Oryza sativa (japonica cultivar-group) hypothet... 40 6.4
31gb|BT012756.1| Lycopersicon esculentum clone 113700R, mRNA sequence 40 6.4
32gb|AC123947.5| Mus musculus BAC clone RP23-103O6 from chromosome... 40 6.4
33gb|AC161381.2| Mus musculus BAC clone RP23-166L22 from chromosom... 40 6.4
34gb|AC122934.2| Mus musculus BAC clone RP23-19A13 from 3, complet... 40 6.4
35gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.4
36gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
37gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar N... 40 6.4
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
39emb|BX932790.1| Gallus gallus finished cDNA, clone ChEST276e2 40 6.4
40gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.4
41gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, co... 40 6.4
42gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4 
>gb|AY104411.1| Zea mays PCO124128 mRNA sequence
          Length = 1300

 Score =  172 bits (87), Expect = 7e-40
 Identities = 99/103 (96%)
 Strand = Plus / Minus

                                                                       
Query: 375 tctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatg 434
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tctgaccataatcataggtaagctctgtcattggaggaatatgcttaattgcaaagaatg 713

                                                      
Query: 435 cgatgtgtggatatccctcatcaccatggtcatacagaactgg 477
           | || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 712 caatatgtggatatccctcatcaccatgatcatacagaactgg 670



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 300 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccga 358
           |||||||||||||||| || |||||  | |||||||||||||||||||||||| |||||
Sbjct: 871 tttagccaaaggaacctctacacttcggggaccaacataagcaacttttagacttccga 813
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>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034P08, complete sequence
          Length = 173088

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Plus

                                                                         
Query: 373   gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
             ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 32453 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 32512

                                                          
Query: 433   tgcgatgtgtggatatccctcatcaccatggtcatacagaactgg 477
             |||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct: 32513 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactgg 32557



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                         
Query: 300   tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 359
             |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 32359 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 32418

                       
Query: 360   accctgaatt 369
             | || |||||
Sbjct: 32419 atccagaatt 32428
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>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0007P22, complete sequence
          Length = 148068

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Plus

                                                                          
Query: 373    gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
              ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 143971 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 144030

                                                           
Query: 433    tgcgatgtgtggatatccctcatcaccatggtcatacagaactgg 477
              |||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct: 144031 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactgg 144075



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                          
Query: 300    tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 359
              |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 143877 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 143936

                        
Query: 360    accctgaatt 369
              | || |||||
Sbjct: 143937 atccagaatt 143946
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                            
Query: 373      gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
                ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 22308845 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 22308786

                                                             
Query: 433      tgcgatgtgtggatatccctcatcaccatggtcatacagaactgg 477
                |||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct: 22308785 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactgg 22308741



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 300      tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 359
                |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 22308939 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 22308880

                          
Query: 360      accctgaatt 369
                | || |||||
Sbjct: 22308879 atccagaatt 22308870
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>gb|AF344453.1|AF344453 Oryza sativa SET1 (SET1) mRNA, complete cds
          Length = 2982

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                        
Query: 373  gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
            ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 2421 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 2362

                                                         
Query: 433  tgcgatgtgtggatatccctcatcaccatggtcatacagaactgg 477
            |||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct: 2361 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactgg 2317



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                        
Query: 300  tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 359
            |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 2515 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 2456

                      
Query: 360  accctgaatt 369
            | || |||||
Sbjct: 2455 atccagaatt 2446
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>dbj|AK102379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092A08, full
            insert sequence
          Length = 3270

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                        
Query: 373  gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
            ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 2741 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 2682

                                                         
Query: 433  tgcgatgtgtggatatccctcatcaccatggtcatacagaactgg 477
            |||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct: 2681 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactgg 2637



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                        
Query: 300  tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 359
            |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 2835 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 2776

                      
Query: 360  accctgaatt 369
            | || |||||
Sbjct: 2775 atccagaatt 2766
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>dbj|AK059336.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A12, full
            insert sequence
          Length = 1858

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                        
Query: 373  gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
            ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1449 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 1390

                                                         
Query: 433  tgcgatgtgtggatatccctcatcaccatggtcatacagaactgg 477
            |||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct: 1389 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactgg 1345
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                            
Query: 373      gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
                ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 22618756 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 22618697

                                                             
Query: 433      tgcgatgtgtggatatccctcatcaccatggtcatacagaactgg 477
                |||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct: 22618696 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactgg 22618652



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 300      tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 359
                |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 22618850 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 22618791

                          
Query: 360      accctgaatt 369
                | || |||||
Sbjct: 22618790 atccagaatt 22618781
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                            
Query: 377      tgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcg 436
                |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||| 
Sbjct: 11536905 tgaccataatcataagtaagctctgtcatgggaggaatgttcttgattgcaaagaatgca 11536846

                                                  
Query: 437      atgtgtggatatccctcatcaccatggtcataca 470
                || ||||| || |||||||||||||| |||||||
Sbjct: 11536845 atatgtgggtagccctcatcaccatgatcataca 11536812
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>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042L15, from chromosome 3, complete sequence
          Length = 172475

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                         
Query: 377   tgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcg 436
             |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||| 
Sbjct: 87477 tgaccataatcataagtaagctctgtcatgggaggaatgttcttgattgcaaagaatgca 87418

                                               
Query: 437   atgtgtggatatccctcatcaccatggtcataca 470
             || ||||| || |||||||||||||| |||||||
Sbjct: 87417 atatgtgggtagccctcatcaccatgatcataca 87384
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                            
Query: 377      tgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcg 436
                |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||| 
Sbjct: 11533668 tgaccataatcataagtaagctctgtcatgggaggaatgttcttgattgcaaagaatgca 11533609

                                                  
Query: 437      atgtgtggatatccctcatcaccatggtcataca 470
                || ||||| || |||||||||||||| |||||||
Sbjct: 11533608 atatgtgggtagccctcatcaccatgatcataca 11533575
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>ref|NM_191045.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2211

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 380  ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 439
            ||||| ||||| || || |||||||| |||||||||||||| | ||| |||||   ||||
Sbjct: 2123 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 2064

                                       
Query: 440  tgtggatatccctcatcaccatggtca 466
            |||||||| || || || |||||||||
Sbjct: 2063 tgtggataaccatcctctccatggtca 2037
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                            
Query: 380      ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 439
                ||||| ||||| || || |||||||| |||||||||||||| | ||| |||||   ||||
Sbjct: 34476671 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 34476612

                                           
Query: 440      tgtggatatccctcatcaccatggtca 466
                |||||||| || || || |||||||||
Sbjct: 34476611 tgtggataaccatcctctccatggtca 34476585
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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468B07
          Length = 169071

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                          
Query: 380    ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 439
              ||||| ||||| || || |||||||| |||||||||||||| | ||| |||||   ||||
Sbjct: 159015 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 158956

                                         
Query: 440    tgtggatatccctcatcaccatggtca 466
              |||||||| || || || |||||||||
Sbjct: 158955 tgtggataaccatcctctccatggtca 158929
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>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0425G02
          Length = 155432

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                         
Query: 380   ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 439
             ||||| ||||| || || |||||||| |||||||||||||| | ||| |||||   ||||
Sbjct: 52390 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 52331

                                        
Query: 440   tgtggatatccctcatcaccatggtca 466
             |||||||| || || || |||||||||
Sbjct: 52330 tgtggataaccatcctctccatggtca 52304
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>dbj|AK065227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H03, full
            insert sequence
          Length = 2926

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 380  ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 439
            ||||| ||||| || || |||||||| |||||||||||||| | ||| |||||   ||||
Sbjct: 2426 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 2367

                                       
Query: 440  tgtggatatccctcatcaccatggtca 466
            |||||||| || || || |||||||||
Sbjct: 2366 tgtggataaccatcctctccatggtca 2340
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>ref|NM_101640.1| Arabidopsis thaliana SUVH7 (SU(VAR)3-9 HOMOLOG 7); histone-lysine
            N-methyltransferase/ zinc ion binding AT1G17770 (SUVH7)
            mRNA, complete cds
          Length = 2082

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 380  ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 429
            ||||| |||||||| | ||||||||| |||||||||||||| || |||||
Sbjct: 1979 ccatagtcatatgttaactctgtcatcggaggaatatgcttcatagcaaa 1930
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>ref|NM_128034.2| Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21) AT2G24740 (SDG21)
            mRNA, complete cds
          Length = 2268

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 380  ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 429
            ||||| |||||||| | |||||||||||||||||| ||||| || |||||
Sbjct: 2168 ccatagtcatatgttaactctgtcattggaggaatgtgcttcatcgcaaa 2119
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>gb|AC007266.5| Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete
             sequence
          Length = 66237

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 380   ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 429
             ||||| |||||||| | |||||||||||||||||| ||||| || |||||
Sbjct: 26691 ccatagtcatatgttaactctgtcattggaggaatgtgcttcatcgcaaa 26740
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>gb|AF344451.1|AF344451 Arabidopsis thaliana SUVH8 (SUVH8) gene, complete cds
          Length = 2268

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 380  ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 429
            ||||| |||||||| | |||||||||||||||||| ||||| || |||||
Sbjct: 2168 ccatagtcatatgttaactctgtcattggaggaatgtgcttcatcgcaaa 2119
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>gb|AF344450.1|AF344450 Arabidopsis thaliana SUVH7 (SUVH7) mRNA, complete cds
          Length = 2082

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 380  ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 429
            ||||| |||||||| | ||||||||| |||||||||||||| || |||||
Sbjct: 1979 ccatagtcatatgttaactctgtcatcggaggaatatgcttcatagcaaa 1930
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>gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 75133

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 380  ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 429
            ||||| |||||||| | ||||||||| |||||||||||||| || |||||
Sbjct: 3730 ccatagtcatatgttaactctgtcatcggaggaatatgcttcatagcaaa 3681
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>emb|CR847981.15| Zebrafish DNA sequence from clone CH211-195H23 in linkage group 15,
              complete sequence
          Length = 197506

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 421    aattgcaaagaatgcgatgtgtg 443
              |||||||||||||||||||||||
Sbjct: 174104 aattgcaaagaatgcgatgtgtg 174126
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>gb|AY093419.1| Zea mays SET domain protein 105 (set105) mRNA, complete cds
          Length = 2487

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 379  accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
            |||||| ||||| || || |||||||| || ||||||||||| | |||||||||
Sbjct: 2070 accatagtcataagtcagttctgtcatgggtggaatatgcttcagtgcaaagaa 2017
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>gb|AF545813.1| Zea mays SET domain protein 113 (sdg113) mRNA, complete cds
          Length = 2428

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 379  accataatcatatgtaagctctgtcattggaggaatatgctt 420
            |||||| ||||| || | ||||||||| ||||||||||||||
Sbjct: 2254 accatagtcataagtcaactctgtcatgggaggaatatgctt 2213
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>gb|AY596552.1| Saccharum officinarum clone SCCCRZ2001G10, complete sequence
          Length = 2562

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 379 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
           |||||| ||||| || || |||||||| || ||||||||||| | |||||||||
Sbjct: 533 accatagtcataagtcagttctgtcatgggtggaatatgcttcagtgcaaagaa 586
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>gb|AY112212.1| Zea mays CL3507_2 mRNA sequence
          Length = 824

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 379 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 432
           |||||| ||||| || || |||||||| || ||||||||||| | |||||||||
Sbjct: 479 accatagtcataagtcagttctgtcatgggtggaatatgcttcagtgcaaagaa 532
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>gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92909

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   agaaagaggcagcaaagttat 209
             |||||||||||||||||||||
Sbjct: 59901 agaaagaggcagcaaagttat 59881
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>gb|AC170189.2| Mus musculus BAC clone RP23-103L12 from chromosome 3, complete sequence
          Length = 204731

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   gattatttagccaaaggaac 314
             ||||||||||||||||||||
Sbjct: 46135 gattatttagccaaaggaac 46154
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>ref|NM_196119.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OJ1208D02.14), mRNA
          Length = 726

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 tccctcatcaccatggtcat 467
           ||||||||||||||||||||
Sbjct: 329 tccctcatcaccatggtcat 348
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>gb|BT012756.1| Lycopersicon esculentum clone 113700R, mRNA sequence
          Length = 1165

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 227 caccacacccataat-gccgccgccaccataa 257
           ||||| ||||||||| ||||||||||||||||
Sbjct: 529 caccagacccataattgccgccgccaccataa 498
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>gb|AC123947.5| Mus musculus BAC clone RP23-103O6 from chromosome 8, complete sequence
          Length = 187773

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   gatgtgtggatatccctcat 455
             ||||||||||||||||||||
Sbjct: 46446 gatgtgtggatatccctcat 46427



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   gatgtgtggatatccctcat 455
             ||||||||||||||||||||
Sbjct: 46363 gatgtgtggatatccctcat 46344
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>gb|AC161381.2| Mus musculus BAC clone RP23-166L22 from chromosome 8, complete sequence
          Length = 233354

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   gatgtgtggatatccctcat 455
             ||||||||||||||||||||
Sbjct: 11264 gatgtgtggatatccctcat 11283



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   gatgtgtggatatccctcat 455
             ||||||||||||||||||||
Sbjct: 11181 gatgtgtggatatccctcat 11200
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>gb|AC122934.2| Mus musculus BAC clone RP23-19A13 from 3, complete sequence
          Length = 189627

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    gattatttagccaaaggaac 314
              ||||||||||||||||||||
Sbjct: 153607 gattatttagccaaaggaac 153626
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 291     ggttgattatttagccaaag 310
               ||||||||||||||||||||
Sbjct: 1242833 ggttgattatttagccaaag 1242852
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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
             complete sequence
          Length = 131922

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   tccctcatcaccatggtcat 467
             ||||||||||||||||||||
Sbjct: 35512 tccctcatcaccatggtcat 35493
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>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OJ1208D02 from chromosome 10, complete sequence
          Length = 120132

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   tccctcatcaccatggtcat 467
             ||||||||||||||||||||
Sbjct: 95644 tccctcatcaccatggtcat 95625
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 448      tccctcatcaccatggtcat 467
                ||||||||||||||||||||
Sbjct: 11227524 tccctcatcaccatggtcat 11227505
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>emb|BX932790.1| Gallus gallus finished cDNA, clone ChEST276e2
          Length = 1125

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 100  actacaactaacaacaccacagaa 123
            |||||||||||||| |||||||||
Sbjct: 1041 actacaactaacaagaccacagaa 1018
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 279     gtatcccttaagggttgattattt 302
               |||||||||||||||||| |||||
Sbjct: 3583495 gtatcccttaagggttgagtattt 3583472
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>gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, complete sequence
          Length = 138532

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ctgcaggcttgaaacatctt 43
             ||||||||||||||||||||
Sbjct: 45496 ctgcaggcttgaaacatctt 45515
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 448      tccctcatcaccatggtcat 467
                ||||||||||||||||||||
Sbjct: 11233964 tccctcatcaccatggtcat 11233945


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,930,432
Number of Sequences: 3902068
Number of extensions: 3930432
Number of successful extensions: 65375
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65089
Number of HSP's gapped (non-prelim): 287
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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