Clone Name | rbastl03f10 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | DRC1A_CHICK (Q5ZM13) Down-regulated by CTNNB1 protein A | 32 | 0.91 | 2 | CSTA_HELPY (P56190) Carbon starvation protein A homolog | 32 | 1.2 | 3 | US17_HCMVA (P09716) Hypothetical protein HVLF1 | 31 | 1.6 | 4 | CSTA_HELPJ (Q9ZK47) Carbon starvation protein A homolog | 30 | 4.5 | 5 | VGNB_APMV (Q02941) Genome polyprotein B (RNA1 polyprotein) [Cont... | 29 | 5.9 |
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>DRC1A_CHICK (Q5ZM13) Down-regulated by CTNNB1 protein A| Length = 515 Score = 32.0 bits (71), Expect = 0.91 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 10/63 (15%) Frame = +3 Query: 6 TNTYFIYSYK-VANITVLNNMPEKSGT---------CQEKTTIKGCSRQALVCASRRPDP 155 T T F S++ V+ +TV NN SGT QE+ I G R L S++P+ Sbjct: 443 TTTVFSKSFEQVSGVTVANNRGGVSGTEANRFSACSLQEEKLIYGTERTDLPVLSKQPNQ 502 Query: 156 QRP 164 QRP Sbjct: 503 QRP 505
>CSTA_HELPY (P56190) Carbon starvation protein A homolog| Length = 687 Score = 31.6 bits (70), Expect = 1.2 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Frame = -1 Query: 465 PFHPGTGPCRYSHTILVF*VALVSSVIFSLLHG*EVAGASSSGWSPGLLILERLLACLVD 286 PF G+GP ++ ++ F V+ S H SSG +P +L E Sbjct: 312 PFVDGSGPV-FAGSVFPFLFITVACGTISGFHA-----LISSGTTPKMLAKESDAR---- 361 Query: 285 IDIVIEFGSVSMLRSCVLFSLVCVWC-HVGLLFSCGSS*ECLVFGDLAVARRILEPGGYN 109 ++ +GS+ M L +LVC H GL F+ S E + D+A A ++ G+N Sbjct: 362 ---LVGYGSMVMESVVALMALVCAGILHPGLYFAINSP-EVSIGKDIADAASVISSWGFN 417 Query: 108 L 106 + Sbjct: 418 I 418
>US17_HCMVA (P09716) Hypothetical protein HVLF1| Length = 293 Score = 31.2 bits (69), Expect = 1.6 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Frame = -1 Query: 402 LVSSVIFSLLHG*EVAGASSSGWSPGLLILERLLACLVDI-------DIVIEFGSVSMLR 244 +V ++ +LLHG G+ +S SPGLL + +L L I ++ F S L Sbjct: 86 MVPTICLALLHGKRDEGSFTSPPSPGLLTIYSVLTTLSVIVASACSSSTLVTF---SGLL 142 Query: 243 SCVLFSLVCVWCHVGL 196 +CVLFSL C GL Sbjct: 143 ACVLFSLCS--CVTGL 156
>CSTA_HELPJ (Q9ZK47) Carbon starvation protein A homolog| Length = 687 Score = 29.6 bits (65), Expect = 4.5 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Frame = -1 Query: 465 PFHPGTGPCRYSHTILVF*VALVSSVIFSLLHG*EVAGASSSGWSPGLLILERLLACLVD 286 PF G+GP ++ ++ F V+ S H SSG +P +L E Sbjct: 312 PFVDGSGPV-FAGSVFPFLFITVACGTISGFHA-----LISSGTTPKMLAKESDAR---- 361 Query: 285 IDIVIEFGSVSMLRSCVLFSLVCVW-CHVGLLFSCGSS*ECLVFGDLAVARRILEPGGYN 109 ++ +GS+ M L +LVC H GL F+ S E + D+A A ++ G++ Sbjct: 362 ---LVGYGSMVMESVVALMALVCAGILHPGLYFAINSP-EVSIGKDIADAASVISSWGFS 417 Query: 108 L 106 + Sbjct: 418 I 418
>VGNB_APMV (Q02941) Genome polyprotein B (RNA1 polyprotein) [Contains:| Picornain 3C-like protease (EC 3.4.22.-) (3C-like protease) (24 kDa protein); RNA-directed RNA polymerase (EC 2.7.7.48) (87 kDa protein)] (Fragment) Length = 729 Score = 29.3 bits (64), Expect = 5.9 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +3 Query: 315 GSANLETSRWSWRLQLLSHEAV-KK*HWTLEQPKKPVWCGYNG 440 G L T+ W LL V KK HW + + KK ++C G Sbjct: 639 GRGGLPTAHWLRTCMLLEKGNVRKKLHWAMAEKKKIIFCAKGG 681 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,622,383 Number of Sequences: 219361 Number of extensions: 1350686 Number of successful extensions: 3449 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3354 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3449 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)