ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03f08 |
|---|---|
| Clone Library Name | barley_pub |
>DEOB_MYCPU (Q98QT4) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 395 Score = 32.3 bits (72), Expect = 0.46 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +1 Query: 196 IVCTDHGNVLHFP-QLQTWESL*LVPNAWCANSELLRNPDSVTDLSTIGTMSWIIRRNYA 372 I+ DHGN FP T E+L L+ S+ +NP + L +GT I+ RN+ Sbjct: 326 IITADHGNDPTFPGSSHTREALPLI-----VYSKAFKNPSYLKTLLGLGTSGNIVARNFG 380 Query: 373 MSPIGLG 393 + I G Sbjct: 381 LKTIETG 387
>VLDLR_CHICK (P98165) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) (Vitellogenin receptor) (VTG receptor) Length = 863 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Frame = +3 Query: 186 GVGNCLHRPWQCSTFPSASDMGISVTCSK--CVVCQFR 293 G G C+H+ W+C P D + C C QFR Sbjct: 265 GSGECIHKKWRCDGDPDCKDGSDEINCPSRTCRPDQFR 302
>DXS_MYCPE (Q8EWX7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 612 Score = 30.8 bits (68), Expect = 1.4 Identities = 12/50 (24%), Positives = 26/50 (52%) Frame = +1 Query: 10 TDSLAFQHTQTLYYNPT*VIVLRNNNNKKDDARMGAAHGLQEKWHACRKI 159 ++ LAF+ + YN T ++++ N+N +GA H + K+ + + Sbjct: 151 SNGLAFEALNNIAYNKTPMLIIINDNGMSISKNVGALHKIMSKFQMSKSV 200
>NFX1_HUMAN (Q12986) Transcriptional repressor NF-X1 (EC 6.3.2.-) (Nuclear| transcription factor, X box-binding, 1) Length = 1104 Score = 30.4 bits (67), Expect = 1.8 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Frame = -3 Query: 233 GKCRTLPWSVQTIAHPCK---RMKKPDDIFLHACHFSCNPCAAP 111 GK + WS I H C R K+P H+C+ C+P P Sbjct: 408 GKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCP 451
>VLDLR_RAT (P98166) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 2.3 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +3 Query: 186 GVGNCLHRPWQCSTFPSASDMGISVTC 266 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_RABIT (P35953) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 2.3 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +3 Query: 186 GVGNCLHRPWQCSTFPSASDMGISVTC 266 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_MOUSE (P98156) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 2.3 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +3 Query: 186 GVGNCLHRPWQCSTFPSASDMGISVTC 266 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>VLDLR_HUMAN (P98155) Very low-density lipoprotein receptor precursor (VLDL| receptor) (VLDL-R) Length = 873 Score = 30.0 bits (66), Expect = 2.3 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = +3 Query: 186 GVGNCLHRPWQCSTFPSASDMGISVTC 266 G G C+H+ W+C P D V C Sbjct: 247 GSGECIHKKWRCDGDPDCKDGSDEVNC 273
>CRYD_BRARE (Q4KML2) Cryptochrome DASH (Protein CRY-DASH) (zCRY-DASH)| Length = 520 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +2 Query: 98 TMPEWVRHTGYKKSGTRAEKYRQVSSCVCR 187 T PEW RH K SG + K R+ SS R Sbjct: 474 TAPEWSRHVNNKSSGPSSSKGRKGSSYTAR 503
>SYL_BUCAI (P57519) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 859 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +2 Query: 35 HKHSTTTLHELLFYVTIITKKTMPEWVRHTGYKKSGTRA 151 +K T ++ LF V ITKKT+P W+ + + + GT A Sbjct: 294 YKVKYTGINTNLFVVHPITKKTIPIWISNATHIEYGTNA 332
>KRB2_VACCV (P24362) Probable serine/threonine-protein kinase B12 (EC 2.7.11.1)| Length = 283 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +2 Query: 35 HKHSTTTLHELLFYVTIITKKTMPEWVRHTGYK 133 HK L E+ FY++++ T+ W R G K Sbjct: 48 HKSHKPLLSEIRFYISVLDPLTIDNWTRERGIK 80
>KRB2_VACCC (P21098) Probable serine/threonine-protein kinase B12 (EC 2.7.11.1)| Length = 283 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +2 Query: 35 HKHSTTTLHELLFYVTIITKKTMPEWVRHTGYK 133 HK L E+ FY++++ T+ W R G K Sbjct: 48 HKSHKPLLSEIRFYISVLDPLTIDNWTRERGIK 80
>KRB2_VACCA (O57259) Probable serine/threonine-protein kinase B12 (EC 2.7.11.1)| Length = 283 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +2 Query: 35 HKHSTTTLHELLFYVTIITKKTMPEWVRHTGYK 133 HK L E+ FY++++ T+ W R G K Sbjct: 48 HKSHKPLLSEIRFYISVLDPLTIDNWTRERGIK 80
>HYIN_PANAY (Q47860) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)| (Indole-3-acetamide hydrolase) Length = 460 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = +3 Query: 192 GNCLHRPWQCSTFPSASDMG--ISVTCSKCVVCQFR 293 G C+ RPW + S SD G + + + C + FR Sbjct: 148 GGCVSRPWSAGLYRSPSDTGGSVRIPAAFCGIAGFR 183
>VHR1_COWPX (P12932) Host range protein 1| Length = 669 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 16/73 (21%) Frame = +1 Query: 190 WAIVCTDHG-NVLHF----PQLQ-----------TWESL*LVPNAWCANSELLRNPDSVT 321 ++++ TDHG ++H P+L+ TW+ + L PNA ++++ +N +SV Sbjct: 590 FSLIFTDHGAKIIHRYANNPELRAYYESKQNKIYTWKYMILFPNAIVKHNKIHKNIESVD 649 Query: 322 DLSTIGTMSWIIR 360 D + I + + I+ Sbjct: 650 DNTYISNLPYTIK 662
>DDX10_MOUSE (Q80Y44) Probable ATP-dependent RNA helicase DDX10 (EC 3.6.1.-)| (DEAD box protein 10) Length = 875 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +1 Query: 76 RNNNNKKDDARMGAAHGLQEKWHACRKISSG 168 + NN + DD R + HG + KW + +G Sbjct: 827 KRNNTEDDDVRPRSRHGKKAKWETVEPLDTG 857
>LDLR_RAT (P35952) Low-density lipoprotein receptor precursor (LDL receptor)| Length = 879 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/55 (27%), Positives = 18/55 (32%) Frame = +3 Query: 105 PNGCGTRVTRKVARVQKNIVRFLHAFAGVGNCLHRPWQCSTFPSASDMGISVTCS 269 P CG T A V + L G C+HR W C D C+ Sbjct: 181 PQNCGAEDT--AAEVVSSPCSSLEFHCGSSECIHRSWVCDGAADCKDKSDEENCA 233
>LRP5_MOUSE (Q91VN0) Low-density lipoprotein receptor-related protein 5 precursor| (LRP7) (Lr3) Length = 1614 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +3 Query: 195 NCLHRPWQCSTFPSASDMGISVTCSKCVVCQF 290 +C+ W+C FP +D C C QF Sbjct: 1271 DCIPGAWRCDGFPECADQSDEEGCPVCSASQF 1302
>LRP5_HUMAN (O75197) Low-density lipoprotein receptor-related protein 5 precursor| Length = 1615 Score = 28.5 bits (62), Expect = 6.7 Identities = 10/32 (31%), Positives = 13/32 (40%) Frame = +3 Query: 195 NCLHRPWQCSTFPSASDMGISVTCSKCVVCQF 290 +C+ W+C FP D C C QF Sbjct: 1272 DCIPGAWRCDGFPECDDQSDEEGCPVCSAAQF 1303
>LRP2_HUMAN (P98164) Low-density lipoprotein receptor-related protein 2 precursor| (Megalin) (Glycoprotein 330) (gp330) Length = 4655 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/25 (40%), Positives = 11/25 (44%) Frame = +3 Query: 192 GNCLHRPWQCSTFPSASDMGISVTC 266 GNC+HR W C DM C Sbjct: 1281 GNCIHRAWLCDRDNDCGDMSDEKDC 1305
>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3| precursor (hLRp105) Length = 770 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = +3 Query: 192 GNCLHRPWQCSTFPSASDMGISVTCS 269 G CL PWQC+T D CS Sbjct: 176 GKCLPGPWQCNTVDECGDGSDEGNCS 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,676,500 Number of Sequences: 219361 Number of extensions: 1517851 Number of successful extensions: 3734 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3592 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3734 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
