ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC008709.6| Homo sapiens chromosome 5 clone CTB-78O4, complet... 44 0.36
2gb|AC010275.6| Homo sapiens chromosome 5 clone CTC-499J9, comple... 44 0.36
3ref|XM_966248.1| PREDICTED: Tribolium castaneum similar to ETS-l... 42 1.4
4gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, comp... 42 1.4
5dbj|AK082513.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 42 1.4
6emb|AL935047.12| Zebrafish DNA sequence from clone DKEY-20L10, c... 42 1.4
7ref|XM_641991.1| Dictyostelium discoideum hypothetical protein (... 40 5.7
8gb|U23177.1| Caenorhabditis elegans cosmid C56G2, complete sequence 40 5.7
9gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, compl... 40 5.7
10gb|AC140134.2| Homo sapiens chromosome 5 clone RP11-1319K7, comp... 40 5.7
11gb|AC138866.2| Homo sapiens chromosome 5 clone RP11-1415C14, com... 40 5.7
12gb|AC146949.1| Homo sapiens chromosome 5 clone RP11-1198D22, com... 40 5.7
13gb|AC145138.2| Homo sapiens chromosome 5 clone RP11-1280N14, com... 40 5.7
14gb|AC145144.2| Homo sapiens chromosome 5 clone RP11-1432L1, comp... 40 5.7
15gb|AC141113.5| Medicago truncatula clone mth2-7h7, complete sequ... 40 5.7
16gb|AC139510.3| Homo sapiens chromosome 5 clone RP11-977J23, comp... 40 5.7
17gb|AC139778.2| Homo sapiens chromosome 5 clone RP11-1012N14, com... 40 5.7
18gb|AC146335.1| Homo sapiens chromosome 5 clone RP11-1305N21, com... 40 5.7
19emb|AL355577.7| Human DNA sequence from clone RP11-299G2 on chro... 40 5.7
20gb|AC174293.6| Medicago truncatula clone mth2-70h5, complete seq... 40 5.7
21gb|AC139277.2| Homo sapiens chromosome 5 clone RP11-619K7, compl... 40 5.7
22gb|AC109487.3| Homo sapiens chromosome 5 clone RP11-551B22, comp... 40 5.7
23gb|AC109779.6| Homo sapiens 3 BAC RP11-16J16 (Roswell Park Cance... 40 5.7
24gb|AC024220.13| Homo sapiens 3 BAC RP11-33A14 (Roswell Park Canc... 40 5.7
25dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 5.7
26gb|AC010639.5| Homo sapiens chromosome 5 clone CTD-2358I2, compl... 40 5.7
27gb|AC099765.1| Caenorhabditis briggsae cosmid CB031I14, complete... 40 5.7
28gb|AC010217.6| Homo sapiens chromosome 5 clone CTC-202F24, compl... 40 5.7
29gb|AC016554.8| Homo sapiens chromosome 5 clone CTC-340H12, compl... 40 5.7
30gb|AC121565.4| Mus musculus BAC clone RP23-223J11 from chromosom... 40 5.7
31gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, comp... 40 5.7
32gb|AC139494.2| Homo sapiens chromosome 5 clone RP11-846E15, comp... 40 5.7
33gb|AC117070.2| Dictyostelium discoideum chromosome 2 map 2097701... 40 5.7
34gb|AC118459.2| Homo sapiens chromosome 5 clone RP11-124L9, compl... 40 5.7
35emb|BX005045.10| Zebrafish DNA sequence from clone CH211-69C9 in... 40 5.7
36gb|AC004999.1|AC004999 Homo sapiens PAC clone RP1-215P15 from 5q... 40 5.7
37gb|AC007159.4|AC007159 Homo sapiens, clone 2_A_4, complete sequence 40 5.7
38emb|CR854915.21| Zebrafish DNA sequence from clone DKEY-4G13 in ... 40 5.7
39emb|AL929012.4| Mouse DNA sequence from clone RP23-477G20 on chr... 40 5.7 
>gb|AC008709.6| Homo sapiens chromosome 5 clone CTB-78O4, complete sequence
          Length = 114421

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 77    gtaacaataataacaaaaaaga 98
             ||||||||||||||||||||||
Sbjct: 71760 gtaacaataataacaaaaaaga 71739
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>gb|AC010275.6| Homo sapiens chromosome 5 clone CTC-499J9, complete sequence
          Length = 197255

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 77    gtaacaataataacaaaaaaga 98
             ||||||||||||||||||||||
Sbjct: 46513 gtaacaataataacaaaaaaga 46534
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>ref|XM_966248.1| PREDICTED: Tribolium castaneum similar to ETS-like protein pointed,
           isoform P1 (D-ETS-2) (LOC659984), mRNA
          Length = 1989

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 166 ggtttcttcatgcgtttgcag 186
           |||||||||||||||||||||
Sbjct: 968 ggtttcttcatgcgtttgcag 948
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>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence
          Length = 170361

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     aacaataataacaaaaaagac 99
              |||||||||||||||||||||
Sbjct: 103719 aacaataataacaaaaaagac 103739
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>dbj|AK082513.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230058G20 product:hypothetical
            DHHC-type Zn-finger containing protein, full insert
            sequence
          Length = 4446

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 76   cgtaacaataataacaaaaaa 96
            |||||||||||||||||||||
Sbjct: 3642 cgtaacaataataacaaaaaa 3622
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>emb|AL935047.12| Zebrafish DNA sequence from clone DKEY-20L10, complete sequence
          Length = 201929

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 79   aacaataataacaaaaaagac 99
            |||||||||||||||||||||
Sbjct: 8299 aacaataataacaaaaaagac 8319
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>ref|XM_641991.1| Dictyostelium discoideum hypothetical protein (DDB0202068), partial
           mRNA
          Length = 2070

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  taacaataataacaaaaaag 97
           ||||||||||||||||||||
Sbjct: 444 taacaataataacaaaaaag 463
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>gb|U23177.1| Caenorhabditis elegans cosmid C56G2, complete sequence
          Length = 45643

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    aacaataataacaaaaaaga 98
             ||||||||||||||||||||
Sbjct: 38718 aacaataataacaaaaaaga 38699
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>gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, complete sequence
          Length = 262048

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     acacaaacactctactacaa 53
              ||||||||||||||||||||
Sbjct: 149132 acacaaacactctactacaa 149113
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>gb|AC140134.2| Homo sapiens chromosome 5 clone RP11-1319K7, complete sequence
          Length = 217820

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 193409 catttcaacacacacaaaaactct 193386



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    catttcaacacacacaaacactct 46
             |||||||||||||||||| |||||
Sbjct: 49135 catttcaacacacacaaaaactct 49158
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>gb|AC138866.2| Homo sapiens chromosome 5 clone RP11-1415C14, complete sequence
          Length = 213824

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    catttcaacacacacaaacactct 46
             |||||||||||||||||| |||||
Sbjct: 10078 catttcaacacacacaaaaactct 10055
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>gb|AC146949.1| Homo sapiens chromosome 5 clone RP11-1198D22, complete sequence
          Length = 205574

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 194990 catttcaacacacacaaaaactct 195013
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>gb|AC145138.2| Homo sapiens chromosome 5 clone RP11-1280N14, complete sequence
          Length = 199372

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 128048 catttcaacacacacaaaaactct 128025
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>gb|AC145144.2| Homo sapiens chromosome 5 clone RP11-1432L1, complete sequence
          Length = 211638

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 203662 catttcaacacacacaaaaactct 203685
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>gb|AC141113.5| Medicago truncatula clone mth2-7h7, complete sequence
          Length = 138094

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    taacaataataacaaaaaag 97
             ||||||||||||||||||||
Sbjct: 58487 taacaataataacaaaaaag 58468
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>gb|AC139510.3| Homo sapiens chromosome 5 clone RP11-977J23, complete sequence
          Length = 179309

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 170425 catttcaacacacacaaaaactct 170448
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>gb|AC139778.2| Homo sapiens chromosome 5 clone RP11-1012N14, complete sequence
          Length = 180014

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 178383 catttcaacacacacaaaaactct 178360



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    catttcaacacacacaaacactct 46
             |||||||||||||||||| |||||
Sbjct: 34108 catttcaacacacacaaaaactct 34131
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>gb|AC146335.1| Homo sapiens chromosome 5 clone RP11-1305N21, complete sequence
          Length = 194399

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    catttcaacacacacaaacactct 46
             |||||||||||||||||| |||||
Sbjct: 76925 catttcaacacacacaaaaactct 76948
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>emb|AL355577.7| Human DNA sequence from clone RP11-299G2 on chromosome 6, complete
            sequence
          Length = 13474

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  aatctctgtaacttgttcca 270
            ||||||||||||||||||||
Sbjct: 4474 aatctctgtaacttgttcca 4455
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>gb|AC174293.6| Medicago truncatula clone mth2-70h5, complete sequence
          Length = 132047

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     taacaataataacaaaaaag 97
              ||||||||||||||||||||
Sbjct: 127501 taacaataataacaaaaaag 127520
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>gb|AC139277.2| Homo sapiens chromosome 5 clone RP11-619K7, complete sequence
          Length = 199996

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 142926 catttcaacacacacaaaaactct 142949
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>gb|AC109487.3| Homo sapiens chromosome 5 clone RP11-551B22, complete sequence
          Length = 155249

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    catttcaacacacacaaacactct 46
             |||||||||||||||||| |||||
Sbjct: 53906 catttcaacacacacaaaaactct 53929
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>gb|AC109779.6| Homo sapiens 3 BAC RP11-16J16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 89162

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    gtaacaataataacaaaaaa 96
             ||||||||||||||||||||
Sbjct: 88000 gtaacaataataacaaaaaa 88019
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>gb|AC024220.13| Homo sapiens 3 BAC RP11-33A14 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 182932

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  gtaacaataataacaaaaaa 96
           ||||||||||||||||||||
Sbjct: 842 gtaacaataataacaaaaaa 861
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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      aacaataataacaaaaaaga 98
               ||||||||||||||||||||
Sbjct: 2434374 aacaataataacaaaaaaga 2434355
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>gb|AC010639.5| Homo sapiens chromosome 5 clone CTD-2358I2, complete sequence
          Length = 76171

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    aacaataataacaaaaaaga 98
             ||||||||||||||||||||
Sbjct: 35078 aacaataataacaaaaaaga 35059
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>gb|AC099765.1| Caenorhabditis briggsae cosmid CB031I14, complete sequence
          Length = 94665

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    aataataacaaaaaagacga 101
             ||||||||||||||||||||
Sbjct: 49726 aataataacaaaaaagacga 49707
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>gb|AC010217.6| Homo sapiens chromosome 5 clone CTC-202F24, complete sequence
          Length = 169137

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 104505 catttcaacacacacaaaaactct 104482
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>gb|AC016554.8| Homo sapiens chromosome 5 clone CTC-340H12, complete sequence
          Length = 113213

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    catttcaacacacacaaacactct 46
             |||||||||||||||||| |||||
Sbjct: 20735 catttcaacacacacaaaaactct 20758
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>gb|AC121565.4| Mus musculus BAC clone RP23-223J11 from chromosome 6, complete sequence
          Length = 170000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    tggcatttcaacacacacaaacac 43
             |||||| |||||||||||||||||
Sbjct: 64217 tggcatgtcaacacacacaaacac 64194
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>gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, complete sequence
          Length = 185457

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 111618 catttcaacacacacaaaaactct 111641
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>gb|AC139494.2| Homo sapiens chromosome 5 clone RP11-846E15, complete sequence
          Length = 210288

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    catttcaacacacacaaacactct 46
             |||||||||||||||||| |||||
Sbjct: 53871 catttcaacacacacaaaaactct 53894
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>gb|AC117070.2| Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4,
             complete sequence
          Length = 136240

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    gtaacaataataacaaaaaa 96
             ||||||||||||||||||||
Sbjct: 30766 gtaacaataataacaaaaaa 30747
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>gb|AC118459.2| Homo sapiens chromosome 5 clone RP11-124L9, complete sequence
          Length = 146061

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 142334 catttcaacacacacaaaaactct 142357
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>emb|BX005045.10| Zebrafish DNA sequence from clone CH211-69C9 in linkage group 19,
              complete sequence
          Length = 161812

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    aggaactatgtcatggatca 355
              ||||||||||||||||||||
Sbjct: 131184 aggaactatgtcatggatca 131165
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>gb|AC004999.1|AC004999 Homo sapiens PAC clone RP1-215P15 from 5q12, complete sequence
          Length = 129541

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     catttcaacacacacaaacactct 46
              |||||||||||||||||| |||||
Sbjct: 115422 catttcaacacacacaaaaactct 115399
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>gb|AC007159.4|AC007159 Homo sapiens, clone 2_A_4, complete sequence
          Length = 155021

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     caaccgactctttggcattt 27
             ||||||||||||||||||||
Sbjct: 92886 caaccgactctttggcattt 92867
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>emb|CR854915.21| Zebrafish DNA sequence from clone DKEY-4G13 in linkage group 13, complete
              sequence
          Length = 158798

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ttcaacacacacaaacactc 45
              ||||||||||||||||||||
Sbjct: 117857 ttcaacacacacaaacactc 117876
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>emb|AL929012.4| Mouse DNA sequence from clone RP23-477G20 on chromosome 2, complete
             sequence
          Length = 201304

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    taacaataataacaaaaaag 97
             ||||||||||||||||||||
Sbjct: 73528 taacaataataacaaaaaag 73547


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,956,131
Number of Sequences: 3902068
Number of extensions: 3956131
Number of successful extensions: 144878
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144769
Number of HSP's gapped (non-prelim): 109
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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