ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (... 33 0.12
2STE3_YEAST (P06783) Pheromone a factor receptor 30 1.1
3UXAC_BACLD (Q65F21) Uronate isomerase (EC 5.3.1.12) (Glucuronate... 28 6.8
4Y539_AQUAE (O66818) Hypothetical protein aq_539 28 6.8
5YFC5_YEAST (P43571) Hypothetical 117.8 kDa protein in STE2-FRS2 ... 27 8.9

>HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (EC 3.4.21.-)|
          Length = 1409

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 168 GVQPSCLSTDC-RGEKAAMELCLTIVLRSTR*TNYFP*KWAQ-KINNRNRATVKVINALA 341
           GV P+  +T C R +   +  C T+ L  T+  N  P       IN  N ATV +     
Sbjct: 705 GVVPNXQNTICTRSDWTGLTTCKTVNLTDTKVINSIPITQINGSINLTNNATVNIHGLAK 764

Query: 342 TRTHVTAPDHSSSSMKQNS 398
              +VT  DHS  ++  N+
Sbjct: 765 LNGNVTLIDHSQFTLSNNA 783



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>STE3_YEAST (P06783) Pheromone a factor receptor|
          Length = 470

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 107 RIFNYCLSRFSSALNLLTAAWRTTVLF 187
           ++F Y ++R++   NLL+  W TTVL+
Sbjct: 135 QVFRYGIARYNGCQNLLSPTWITTVLY 161



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>UXAC_BACLD (Q65F21) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)|
           (Uronic isomerase)
          Length = 473

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 338 ESIDHLDCSPVTVVYFLRPFLGEIISSAC 252
           +S+D  D  P T++Y L P    +ISS C
Sbjct: 333 DSLDRKDALPKTILYSLNPRDNVVISSLC 361



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>Y539_AQUAE (O66818) Hypothetical protein aq_539|
          Length = 285

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 80  FISFRIASYRIFNYCLSRFSSALNLLTAAWRTTVLFE 190
           F SFRI+ +RIF YC   F +   L++A    T+L E
Sbjct: 85  FYSFRISDFRIFLYCSIPFLTFF-LISALLSNTLLEE 120



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>YFC5_YEAST (P43571) Hypothetical 117.8 kDa protein in STE2-FRS2 intergenic|
           region
          Length = 1029

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 37  IRSTKGTDQPSCENIYIFP 93
           ++   G D P CE+IY+FP
Sbjct: 74  LKPFNGADAPQCESIYMFP 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,056,723
Number of Sequences: 219361
Number of extensions: 920218
Number of successful extensions: 1709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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