ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP242_PIG (P79402) Cytochrome P450 2C42 (EC 1.14.14.1) (CYPIIC42... 32 0.80
2CR1EA_BACTX (Q57458) Pesticidal crystal protein cry1Ea (Insectic... 31 1.4
3CP2CJ_HUMAN (P33261) Cytochrome P450 2C19 (EC 1.14.13.80) ((R)-l... 29 3.9
4SYA_LEGPA (Q5X4B7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 29 5.2
5CP239_MOUSE (P56656) Cytochrome P450 2C39 (EC 1.14.14.1) (CYPIIC39) 28 6.7
6PHSG_YEAST (P06738) Glycogen phosphorylase (EC 2.4.1.1) 28 8.8
7CP2CI_HUMAN (P33260) Cytochrome P450 2C18 (EC 1.14.14.1) (CYPIIC... 28 8.8

>CP242_PIG (P79402) Cytochrome P450 2C42 (EC 1.14.14.1) (CYPIIC42) (Fragment)|
          Length = 327

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = -1

Query: 117 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 1
           +GTT+L S   TSV Y  K  P+P +F   HF+D S  F
Sbjct: 220 KGTTILTSL--TSVLYDCKAFPNPEVFDPGHFLDESGNF 256



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>CR1EA_BACTX (Q57458) Pesticidal crystal protein cry1Ea (Insecticidal|
           delta-endotoxin CryIE(a)) (Crystaline entomocidal
           protoxin) (133 kDa crystal protein)
          Length = 1171

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 32  TTNRTGLGSNLTEYETDV*THDS----NTVVPSVLTRIPSCKG 148
           T  R+   +N+T   T V TH S    NT+ P ++T+IP  KG
Sbjct: 430 TLTRSLYNTNITSLPTFVWTHHSATNTNTINPDIITQIPLVKG 472



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>CP2CJ_HUMAN (P33261) Cytochrome P450 2C19 (EC 1.14.13.80) ((R)-limonene|
           6-monooxygenase) (EC 1.14.13.48) ((S)-limonene
           6-monooxygenase) (EC 1.14.13.49) ((S)-limonene
           7-monooxygenase) (CYPIIC19) (P450-11A) (Mephenytoin
           4-hydroxylase) (CYPIIC17) (P450-254C
          Length = 490

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 117 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVD 16
           +GTT+L S   TSV +  K  P+P +F  +HF+D
Sbjct: 383 KGTTILTSL--TSVLHDNKEFPNPEMFDPRHFLD 414



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>SYA_LEGPA (Q5X4B7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 860

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = -1

Query: 231 AVVEVVKNTDSGGKPCIVLLEHLFA*ESPLQEGILVSTEGT-TVLESCV*TSVSYSVKL- 58
           A+ ++ +N D       V+ +H+ +    + +G+L S EG   VL   +  +V +  KL 
Sbjct: 255 AIAQLGQNIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYVLRRIIRRAVRHGNKLG 314

Query: 57  LPSPVLF-VVKHFVDI 13
           LPSP  F +V+  +D+
Sbjct: 315 LPSPFFFKLVQPLIDV 330



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>CP239_MOUSE (P56656) Cytochrome P450 2C39 (EC 1.14.14.1) (CYPIIC39)|
          Length = 490

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 117 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 1
           +GTTV+ S   TSV +  K  P+P LF   HF+D +  F
Sbjct: 383 KGTTVVTSL--TSVLHDSKEFPNPELFDPGHFLDANGNF 419



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>PHSG_YEAST (P06738) Glycogen phosphorylase (EC 2.4.1.1)|
          Length = 901

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +2

Query: 212 FTTSTTAKEVSSDWPSLMQL*LHILVNITHY*FGHFPLRRLDILSNLGWCFRYMIARNRT 391
           +T  T  +E    WP  +              FGH   R L+I+ ++ W F   +A+   
Sbjct: 424 YTNHTVMQEALEKWPRRL--------------FGHLLPRHLEIIYDINWFFLQDVAKKFP 469

Query: 392 RDL 400
           +D+
Sbjct: 470 KDV 472



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>CP2CI_HUMAN (P33260) Cytochrome P450 2C18 (EC 1.14.14.1) (CYPIIC18)|
           (P450-6B/29C)
          Length = 490

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 117 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 1
           +GTT++ S   TSV ++ K  P+P +F   HF+D S  F
Sbjct: 383 KGTTIITSL--TSVLHNDKEFPNPEMFDPGHFLDKSGNF 419


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,328,609
Number of Sequences: 219361
Number of extensions: 942978
Number of successful extensions: 2326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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