ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 119 8e-24
3gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 119 8e-24
4gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome... 119 8e-24
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
6gb|AY110799.1| Zea mays CL4694_1 mRNA sequence 109 7e-21
7ref|NM_113597.2| Arabidopsis thaliana unknown protein AT3G26850 ... 46 0.091
8ref|NM_202639.1| Arabidopsis thaliana unknown protein AT3G26850 ... 46 0.091
9gb|BT015404.1| Arabidopsis thaliana At3g26850 gene, complete cds 46 0.091
10gb|AY056130.1| Arabidopsis thaliana unknown protein (At3g26850) ... 46 0.091
11emb|BX825649.1|CNS0A6C1 Arabidopsis thaliana Full-length cDNA Co... 46 0.091
12gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, compl... 44 0.36
13gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, comp... 44 0.36
14gb|AC015804.14| Homo sapiens chromosome 17, clone RP11-637C24, c... 44 0.36
15gb|AC145163.5| Mus musculus BAC clone RP24-238C5 from chromosome... 44 0.36
16gb|AC132189.13| Mus musculus chromosome 12, clone RP24-95M20, co... 44 0.36
17emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, ... 44 0.36
18dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.36
19gb|U06670.1|MMU06670 Mus musculus very low density lipoprotein r... 42 1.4
20gb|U28736.1| Caenorhabditis elegans cosmid F26A10, complete sequ... 42 1.4
21ref|NM_013703.1| Mus musculus very low density lipoprotein recep... 42 1.4
22gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosom... 40 5.6
23gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome... 40 5.6
24emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-... 40 5.6
25emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on ch... 40 5.6
26gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Ho... 40 5.6
27emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chr... 40 5.6
28gb|AC011353.5| Homo sapiens chromosome 5 clone CTC-328A6, comple... 40 5.6
29gb|AC079864.22| Homo sapiens Xp BAC RP11-662G16 (Roswell Park Ca... 40 5.6
30emb|AL591905.10| Mouse DNA sequence from clone RP23-152H17 on ch... 40 5.6
31emb|BX928740.16| Zebrafish DNA sequence from clone CH211-245J22 ... 40 5.6
32emb|CT485784.2| RP43-026J01, complete sequence 40 5.6 
>dbj|AK100534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N06, full
            insert sequence
          Length = 3665

 Score =  153 bits (77), Expect = 5e-34
 Identities = 128/145 (88%)
 Strand = Plus / Minus

                                                                        
Query: 269  ctataacttcacatacttgtcaacataacccattactagtttggtcactttcctttgaga 328
            ||||| ||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct: 3266 ctatagcttcacatatttgtcaacatagcccattacaagtttggtcactttcttttgaga 3207

                                                                        
Query: 329  agactggacatactgtctaatcttggctggtgttttcggtatatgattgccaggaaccga 388
             ||||||||||||||  | ||||||||||| ||||| || |||||||||  ||| || ||
Sbjct: 3206 ggactggacatactgcttgatcttggctggcgtttttggaatatgattgttagggacaga 3147

                                     
Query: 389  actagagaccttatcaactgttttc 413
            |||||| ||||||||||||||||||
Sbjct: 3146 actagaaaccttatcaactgttttc 3122
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  119 bits (60), Expect = 8e-24
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                           
Query: 298     ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 357
               ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 5975975 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 5976034

                                                                       
Query: 358     gtgttttcggtatatgattgccaggaaccgaactagagaccttatcaactgttttc 413
               | ||||| || |||||||||  ||| || |||||||| ||||||||||||||||||
Sbjct: 5976035 gcgtttttggaatatgattgttagggacagaactagaaaccttatcaactgttttc 5976090
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>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02,
              complete sequence
          Length = 128535

 Score =  119 bits (60), Expect = 8e-24
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                          
Query: 298    ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 357
              ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 125597 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 125656

                                                                      
Query: 358    gtgttttcggtatatgattgccaggaaccgaactagagaccttatcaactgttttc 413
              | ||||| || |||||||||  ||| || |||||||| ||||||||||||||||||
Sbjct: 125657 gcgtttttggaatatgattgttagggacagaactagaaaccttatcaactgttttc 125712
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>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
             complete sequence
          Length = 111961

 Score =  119 bits (60), Expect = 8e-24
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                         
Query: 298   ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 357
             ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 34510 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 34569

                                                                     
Query: 358   gtgttttcggtatatgattgccaggaaccgaactagagaccttatcaactgttttc 413
             | ||||| || |||||||||  ||| || |||||||| ||||||||||||||||||
Sbjct: 34570 gcgtttttggaatatgattgttagggacagaactagaaaccttatcaactgttttc 34625
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  119 bits (60), Expect = 8e-24
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                           
Query: 298     ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 357
               ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 5975188 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 5975247

                                                                       
Query: 358     gtgttttcggtatatgattgccaggaaccgaactagagaccttatcaactgttttc 413
               | ||||| || |||||||||  ||| || |||||||| ||||||||||||||||||
Sbjct: 5975248 gcgtttttggaatatgattgttagggacagaactagaaaccttatcaactgttttc 5975303
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>gb|AY110799.1| Zea mays CL4694_1 mRNA sequence
          Length = 761

 Score =  109 bits (55), Expect = 7e-21
 Identities = 122/146 (83%)
 Strand = Plus / Minus

                                                                       
Query: 275 cttcacatacttgtcaacataacccattactagtttggtcactttcctttgagaagactg 334
           ||||||||||||||| ||||| |||||||||| ||||||||| |||||||| || || ||
Sbjct: 249 cttcacatacttgtcgacataccccattactaatttggtcaccttcctttgggaggattg 190

                                                                       
Query: 335 gacatactgtctaatcttggctggtgttttcggtatatgattgccaggaaccgaactaga 394
            ||||| ||| |||||||||| ||||     || |||||| ||| |||||| ||||  ||
Sbjct: 189 tacataatgtttaatcttggcaggtgnnnnnggaatatgactgctaggaactgaaccgga 130

                                     
Query: 395 gaccttatcaactgttttcctaacaa 420
            |||||||||||||||||||| ||||
Sbjct: 129 aaccttatcaactgttttcctgacaa 104
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>ref|NM_113597.2| Arabidopsis thaliana unknown protein AT3G26850 transcript variant
            AT3G26850.1 mRNA, complete cds
          Length = 1700

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 279  acatacttgtcaacataacccattactagtttggt 313
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1141 acatacttgtctacataacccataaccagtttggt 1107
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>ref|NM_202639.1| Arabidopsis thaliana unknown protein AT3G26850 transcript variant
            AT3G26850.2 mRNA, complete cds
          Length = 1257

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 279  acatacttgtcaacataacccattactagtttggt 313
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1141 acatacttgtctacataacccataaccagtttggt 1107
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>gb|BT015404.1| Arabidopsis thaliana At3g26850 gene, complete cds
          Length = 798

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 279 acatacttgtcaacataacccattactagtttggt 313
           ||||||||||| ||||||||||| || ||||||||
Sbjct: 788 acatacttgtctacataacccataaccagtttggt 754
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>gb|AY056130.1| Arabidopsis thaliana unknown protein (At3g26850) mRNA, complete cds
          Length = 1468

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 279  acatacttgtcaacataacccattactagtttggt 313
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1142 acatacttgtctacataacccataaccagtttggt 1108
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>emb|BX825649.1|CNS0A6C1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL53ZE12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 758

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 279 acatacttgtcaacataacccattactagtttggt 313
           ||||||||||| ||||||||||| || ||||||||
Sbjct: 438 acatacttgtctacataacccataaccagtttggt 404
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>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence
          Length = 199569

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 143    aaaggactttctcatgcaaatagatg 168
              ||||||||||||||||||||| ||||
Sbjct: 195428 aaaggactttctcatgcaaattgatg 195403
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>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence
          Length = 157375

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 143   aaaggactttctcatgcaaatagatg 168
             ||||||||||||||||||||| ||||
Sbjct: 41292 aaaggactttctcatgcaaattgatg 41317
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>gb|AC015804.14| Homo sapiens chromosome 17, clone RP11-637C24, complete sequence
          Length = 200452

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 141    gtaaaggactttctcatgcaaa 162
              ||||||||||||||||||||||
Sbjct: 157305 gtaaaggactttctcatgcaaa 157326
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>gb|AC145163.5| Mus musculus BAC clone RP24-238C5 from chromosome 12, complete sequence
          Length = 194429

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 218    acttctacaactgcaaaggaagtctcttct 247
              |||| ||||| |||||||||||||||||||
Sbjct: 117316 acttgtacaagtgcaaaggaagtctcttct 117345
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>gb|AC132189.13| Mus musculus chromosome 12, clone RP24-95M20, complete sequence
          Length = 203534

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 218    acttctacaactgcaaaggaagtctcttct 247
              |||| ||||| |||||||||||||||||||
Sbjct: 184862 acttgtacaagtgcaaaggaagtctcttct 184891
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>emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, complete sequence
          Length = 178948

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 9     aagaaatatcaacaaagtgctt 30
             ||||||||||||||||||||||
Sbjct: 51025 aagaaatatcaacaaagtgctt 51046
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>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5
          Length = 178420

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 143   aaaggactttctcatgcaaatagatg 168
             ||||||||||||||||||||| ||||
Sbjct: 42915 aaaggactttctcatgcaaattgatg 42940
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>gb|U06670.1|MMU06670 Mus musculus very low density lipoprotein receptor mRNA, complete cds
          Length = 3283

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 10   agaaatatcaacaaagtgctt 30
            |||||||||||||||||||||
Sbjct: 3205 agaaatatcaacaaagtgctt 3185
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>gb|U28736.1| Caenorhabditis elegans cosmid F26A10, complete sequence
          Length = 38482

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   acttacaagaataccttcttg 141
             |||||||||||||||||||||
Sbjct: 29978 acttacaagaataccttcttg 29958
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>ref|NM_013703.1| Mus musculus very low density lipoprotein receptor (Vldlr), mRNA
          Length = 3283

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 10   agaaatatcaacaaagtgctt 30
            |||||||||||||||||||||
Sbjct: 3205 agaaatatcaacaaagtgctt 3185
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>gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosome 14, complete sequence
          Length = 195425

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     atgtttaaacacatgattct 100
              ||||||||||||||||||||
Sbjct: 156209 atgtttaaacacatgattct 156190
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>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete sequence
          Length = 183140

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     tgtttaaacacatgattcta 101
              ||||||||||||||||||||
Sbjct: 133895 tgtttaaacacatgattcta 133876
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>emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-001A02, complete sequence
          Length = 186572

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   cttcacatacttgtcaacat 294
             ||||||||||||||||||||
Sbjct: 60734 cttcacatacttgtcaacat 60715
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>emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on chromosome 10, complete
             sequence
          Length = 139968

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   caaaggaagtctcttctgattggc 254
             ||||||| ||||||||||||||||
Sbjct: 84041 caaaggatgtctcttctgattggc 84064
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>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 242500

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tgtaaaggactttctcatgc 159
              ||||||||||||||||||||
Sbjct: 202855 tgtaaaggactttctcatgc 202836
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>emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chromosome 11 Cntains the
             3' end of the Nipsnap1 gene for 4-nitrophenylphosphatase
             domain and non-neuronal SNAP25-like protein homolog 1 (C.
             elegans), a novel gene, a ribosomal protein L17 (Rpl17)
             pseudogene, the Nefh gene for neurofilament heavy
             polypeptide, the Ap1b1 gene for adaptor protein complex
             AP-1 beta 1 subunit, the gene for the ortholog of human
             RAS-related protein on chromosome 22, the gene for the
             ortholog of human growth arrest-specific 2 like 1 GAS2L1
             and six CpG islands, complete sequence
          Length = 183758

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   ttctacaactgcaaaggaag 239
             ||||||||||||||||||||
Sbjct: 42628 ttctacaactgcaaaggaag 42609
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>gb|AC011353.5| Homo sapiens chromosome 5 clone CTC-328A6, complete sequence
          Length = 143527

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gaaagggaaagaaatatcaa 20
             ||||||||||||||||||||
Sbjct: 54556 gaaagggaaagaaatatcaa 54575
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>gb|AC079864.22| Homo sapiens Xp BAC RP11-662G16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 161874

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  cttcacatacttgtcaacat 294
            ||||||||||||||||||||
Sbjct: 4858 cttcacatacttgtcaacat 4839
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>emb|AL591905.10| Mouse DNA sequence from clone RP23-152H17 on chromosome 2, complete
              sequence
          Length = 194013

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     tgtttaaacacatgattcta 101
              ||||||||||||||||||||
Sbjct: 161820 tgtttaaacacatgattcta 161801
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>emb|BX928740.16| Zebrafish DNA sequence from clone CH211-245J22 in linkage group 18,
             complete sequence
          Length = 154133

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    aaactgatgtttaaacacat 94
             ||||||||||||||||||||
Sbjct: 39008 aaactgatgtttaaacacat 38989
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>emb|CT485784.2| RP43-026J01, complete sequence
          Length = 201375

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    cttcacatacttgtcaacat 294
              ||||||||||||||||||||
Sbjct: 169038 cttcacatacttgtcaacat 169019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,862,339
Number of Sequences: 3902068
Number of extensions: 3862339
Number of successful extensions: 109249
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109155
Number of HSP's gapped (non-prelim): 94
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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