ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLSX_PROMM (Q7V4F7) Fatty acid/phospholipid synthesis protein plsX 30 3.5
2VG12_SHV21 (P24915) Hypothetical gene 12 protein 29 4.5
3NIN_HUMAN (Q8N4C6) Ninein (hNinein) 28 7.7
4MYX2_CROVC (P12029) Myotoxin-2 (Myotoxin II) 28 7.7
5KI13A_HUMAN (Q9H1H9) Kinesin-like protein KIF13A (Kinesin-like p... 28 7.7

>PLSX_PROMM (Q7V4F7) Fatty acid/phospholipid synthesis protein plsX|
          Length = 448

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +2

Query: 143 KPQS*HRKHVWKRKSAQV*HLSW*ACNSCSYSGNVSAILSIRSSGKICAWRGAV 304
           +P++  R  +W R++A V  L   A NS S +GNV+  + + S+G + +  G++
Sbjct: 20  RPRAIRRLVIWYRRNAAVTSLVGSATNSASAAGNVAGTV-VSSAGSVVSNAGSM 72



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>VG12_SHV21 (P24915) Hypothetical gene 12 protein|
          Length = 169

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 131 ILFVVCFRYSACSLCSCMK*WTTMYYWDSPLLVDEKYHSFY 9
           I+  VC     C LC  +    T+  W S +L  E Y++FY
Sbjct: 76  IVLCVCVSTLLCILCILLDICLTIRLWQSSVLCYEVYNTFY 116



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>NIN_HUMAN (Q8N4C6) Ninein (hNinein)|
          Length = 2090

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 67   VHHFIHEHKEQAEYLKQTTNKIEIMKAPKL 156
            VHH I E K++ +YL+  T  +E +KA ++
Sbjct: 1380 VHHVIEECKQENQYLEGNTQLLEKVKAHEI 1409



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>MYX2_CROVC (P12029) Myotoxin-2 (Myotoxin II)|
          Length = 43

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 340 HKTSGSFIDSEIYCTPPSADFAR 272
           HK  G     E  CTPPS+DF +
Sbjct: 5   HKKGGHCFPKEKICTPPSSDFGK 27



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>KI13A_HUMAN (Q9H1H9) Kinesin-like protein KIF13A (Kinesin-like protein RBKIN)|
          Length = 1805

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 79  IHEHKEQAEYLKQTTNKIEIMKAPKLT*KTCLEKKICTSLT 201
           I E +E+ E L++  ++ E MKAP+L  K    +K+   LT
Sbjct: 367 IRELREEVEKLREQLSQAEAMKAPELKEKLEESEKLIKELT 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,284,200
Number of Sequences: 219361
Number of extensions: 1012050
Number of successful extensions: 3138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3137
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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