ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03e12 |
|---|---|
| Clone Library Name | barley_pub |
>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein complex| 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 943 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = -3 Query: 450 DATIEHLAASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNR 271 +A L +SN+F +AKR D+LY S K+ GI L EL G P ++K Sbjct: 868 EAASNKLQSSNIFTVAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSFTLSLKCRAP 927 Query: 270 EFVPLFFEAMESLIK 226 E ++A E+++K Sbjct: 928 EVSQHVYQAYETILK 942
>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein complex| 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large Length = 949 Score = 41.2 bits (95), Expect = 0.001 Identities = 25/75 (33%), Positives = 37/75 (49%) Frame = -3 Query: 450 DATIEHLAASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNR 271 +A L +SN+F +AKR D+LY S K+ GI L EL G P ++K Sbjct: 874 EAASSKLQSSNIFTVAKRTVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSFTLSLKCRAP 933 Query: 270 EFVPLFFEAMESLIK 226 E +A E+++K Sbjct: 934 EVSQHDIQAYETILK 948
>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein complex| 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/75 (32%), Positives = 35/75 (46%) Frame = -3 Query: 450 DATIEHLAASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNR 271 D L +NV+ IAKR D+LY S K+ GI L EL G P ++K Sbjct: 862 DTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAP 921 Query: 270 EFVPLFFEAMESLIK 226 E ++ +S++K Sbjct: 922 EVSQYIYQVYDSILK 936
>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein complex| 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/75 (32%), Positives = 35/75 (46%) Frame = -3 Query: 450 DATIEHLAASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNR 271 D L +NV+ IAKR D+LY S K+ GI L EL G P ++K Sbjct: 862 DTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAP 921 Query: 270 EFVPLFFEAMESLIK 226 E ++ +S++K Sbjct: 922 EVSQYIYQVYDSILK 936
>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein complex| 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/75 (32%), Positives = 35/75 (46%) Frame = -3 Query: 450 DATIEHLAASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGAKCAVKTPNR 271 D L +NV+ IAKR D+LY S K+ GI L EL G P ++K Sbjct: 862 DTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAP 921 Query: 270 EFVPLFFEAMESLIK 226 E ++ +S++K Sbjct: 922 EVSQYIYQVYDSILK 936
>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein complex| 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 949 Score = 39.7 bits (91), Expect = 0.004 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = -3 Query: 450 DATIEHLAASNVFFIAKRRNANMDVLYLSAKIPRGIPFLIELTAAVGAPGA---KCAVKT 280 +A L +SN+F +AKR D+LY S K+ GI L EL G P + ++K Sbjct: 871 EAASSKLQSSNIFTVAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNPSCTDLELSLKC 930 Query: 279 PNREFVPLFFEAMESLIK 226 E ++A E+++K Sbjct: 931 RAPEVSQHVYQAYETILK 948
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 39.3 bits (90), Expect = 0.006 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 364 CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 278 C DPP ++P + C+WC WC+ C S Sbjct: 1029 CLDPPLQTVPKGGWKCKWCVWCRHCGATS 1057
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 39.3 bits (90), Expect = 0.006 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 364 CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 278 C DPP ++P + C+WC WC+ C S Sbjct: 1036 CLDPPLQTVPKGGWKCKWCVWCRHCGATS 1064
>MT2_CALSI (P55950) Metallothionein-2B (MT-2B) (Metallothionein-IIB) (MT-IIB)| [Contains: Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)] Length = 58 Score = 35.0 bits (79), Expect = 0.11 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -2 Query: 430 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 284 C+ KC C+E +CK GC C PP D C K CS+ Sbjct: 6 CNDKCE--CKEGECKTGCKCKSCRCPPCDKCSSECKCTSKEECSKTCSK 52
>COPA_HELPJ (Q9ZM69) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 34.3 bits (77), Expect = 0.18 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = -3 Query: 468 SVISSIDATIEHLAASNVFFIAKRRNANM-DVLYLSAKIPRGIPFLIELTAAVGAPGAKC 292 S+ SSI+ + EH+ A + AK RNA + D+ + K GI +A V GAK Sbjct: 461 SLASSIEKSSEHVIAKGIVEYAKERNAPLKDISEVKVKTGFGI------SAKVDYQGAKE 514 Query: 291 AVKTPNREF 265 +K N EF Sbjct: 515 IIKVGNSEF 523
>MT2_SCYSE (P02806) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 57 Score = 32.7 bits (73), Expect = 0.53 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -2 Query: 430 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 284 C+ KC C+E +CK GC + C PP + C K CS+ Sbjct: 5 CNDKCD--CKEGECKTGCKCTSCRCPPCEQCSSGCKCANKEDCRKTCSK 51
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated| protein 10.4) (High sulfur keratin-associated protein 10.4) (Keratin-associated protein 18-4) (Keratin-associated protein 18.4) Length = 401 Score = 32.3 bits (72), Expect = 0.69 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 10/71 (14%) Frame = -2 Query: 436 TSCSIKCVLYCQEEKCKYGCAVSVCEDP----PWDSIP----DRAYCCRWCSWCKVC--S 287 +SC C C C+ C V VC P P S+P + CC+ S C S Sbjct: 254 SSCQPAC---CTSSPCQQACCVPVCCKPVCCKPVGSVPICSGASSLCCQQSSCQPACCTS 310 Query: 286 EDSKQGVCASI 254 S+QG C + Sbjct: 311 SQSQQGCCVPV 321 Score = 29.3 bits (64), Expect = 5.8 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Frame = -2 Query: 436 TSCSIKCVLYCQEEKCKYGC-AVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDS---KQG 269 +SC+ C CQ+ C+ C A S C+ + + CC+ VC DS +Q Sbjct: 83 SSCTPSC---CQQSSCQLACCASSPCQQACCVPVCCKTVCCKPVCCVPVCCGDSSCCQQS 139 Query: 268 VCAS 257 C S Sbjct: 140 SCQS 143 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -2 Query: 436 TSCSIKCVLYCQEEKCKYGCAVSV-CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 278 +SC+ C CQ+ C+ C S C+ + + CC+ VCSEDS Sbjct: 202 SSCTPSC---CQQSSCQPACCTSSSCQQACCVPVCCKTVCCK-----PVCSEDS 247
>MT1_SCYSE (P02805) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 58 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/49 (32%), Positives = 21/49 (42%) Frame = -2 Query: 430 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 284 C+ KCV C+E CK GC + C P + C K CS+ Sbjct: 5 CNDKCV--CKEGGCKEGCQCTSCRCSPCEKCSSGCKCANKEECSKTCSK 51
>MT1_CALSI (P55949) Metallothionein-1B (MT-1B) (Metallothionein-IB) (MT-IB)| [Contains: Metallothionein-1A (MT-1A) (Metallothionein-IA) (MT-IA)] Length = 59 Score = 32.0 bits (71), Expect = 0.90 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = -2 Query: 430 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 263 C+ KCV CQE CK GC + C P C + S CK +++ C Sbjct: 6 CNDKCV--CQEGGCKAGCQCTSCRCSP---------CQKCTSGCKCATKEECSKTC 50
>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein| 5.4) (Ultrahigh sulfur keratin-associated protein 5.4) Length = 288 Score = 31.2 bits (69), Expect = 1.5 Identities = 19/56 (33%), Positives = 23/56 (41%) Frame = -2 Query: 436 TSCSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQG 269 + C C CQ CK C+ S C S + YCC+ S CK C S G Sbjct: 209 SGCGSSC---CQSSCCKPCCSSSGCGSSCCQSSCCKPYCCQ-SSCCKPCCSSSGCG 260
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 31.2 bits (69), Expect = 1.5 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -2 Query: 364 CEDPPWDSIPDRAYCCRWCSWCKVCSEDS 278 C DPP ++P + C+WC C C S Sbjct: 1181 CLDPPLLTVPKGGWKCKWCVSCMQCGAAS 1209
>KR107_HUMAN (P60409) Keratin-associated protein 10-7 (Keratin-associated| protein 10.7) (High sulfur keratin-associated protein 10.7) (Keratin-associated protein 18-7) (Keratin-associated protein 18.7) Length = 370 Score = 30.8 bits (68), Expect = 2.0 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = -2 Query: 436 TSCSIKCVLYCQEEKCKYGC-AVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDS---KQG 269 +SC+ C CQ+ C+ C A S C+ + + CC+ VCS DS +Q Sbjct: 83 SSCTPSC---CQQSSCQLACCASSPCQQACCVPVCCKTVCCKPVYCVPVCSGDSSCCQQS 139 Query: 268 VCAS 257 C S Sbjct: 140 SCQS 143
>MT_CARMA (P55948) Metallothionein (MT)| Length = 58 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/49 (30%), Positives = 20/49 (40%) Frame = -2 Query: 430 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSE 284 C KC C+E CK GC + C P + C CK C++ Sbjct: 6 CIDKCE--CKEGGCKAGCKCTSCRCTPCEKCSSGCKCTTKEDCCKTCTK 52
>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated| protein 10.6) (High sulfur keratin-associated protein 10.6) (Keratin-associated protein 18-6) (Keratin-associated protein 18.6) Length = 365 Score = 30.0 bits (66), Expect = 3.4 Identities = 18/58 (31%), Positives = 22/58 (37%) Frame = -2 Query: 436 TSCSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 263 +SC C C C+ C V VC P I + CC+ S S Q VC Sbjct: 139 SSCQSAC---CTSSPCQQACCVPVCCKPVCSGI--SSSCCQQSSCVSCVSSPCCQAVC 191 Score = 29.6 bits (65), Expect = 4.4 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Frame = -2 Query: 436 TSCSIKCVLYCQEEKCKYGC-AVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDS---KQG 269 +SC+ C CQ+ C+ C A S C+ + + CC+ VC DS +Q Sbjct: 83 SSCTPSC---CQQSSCQLACCASSPCQQACCVPVCCKTVCCKPVCCVSVCCGDSSCCQQS 139 Query: 268 VCAS 257 C S Sbjct: 140 SCQS 143
>ZNHI2_HUMAN (Q9UHR6) Zinc finger HIT domain-containing protein 2 (Protein FON)| Length = 403 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = -3 Query: 264 VPLFFEAMESLIK*-VTGNLRMDIPSKLFSYEHTAVLFHG 148 VP A+ SL + V+ +R +P+ LF+Y HT L+HG Sbjct: 192 VPTRIPAIVSLSRGPVSPLVRFQLPNVLFAYAHTLALYHG 231
>ZNHI2_MOUSE (Q9QY66) Zinc finger HIT domain-containing protein 2 (Protein FON)| Length = 399 Score = 29.3 bits (64), Expect = 5.8 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -3 Query: 210 LRMDIPSKLFSYEHTAVLFHG 148 +R +P+ LF+Y HT L+HG Sbjct: 206 VRFQLPNVLFAYAHTLALYHG 226
>PXDC2_XENLA (Q6DE92) Plexin domain-containing protein 2 precursor| Length = 513 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 19/51 (37%) Frame = -2 Query: 310 CSWCKV-------------------CSEDSKQGVCASIL*SYGVSYQVSDG 215 CSWC + C+E+SK VC +L + G+S+ + G Sbjct: 331 CSWCNIPQRCSSGFDRHRQDWVENGCTEESKDTVCDDLLQTTGISHHTTTG 381
>TRGS_TACTR (P81281) 8.6 kDa transglutaminase substrate| Length = 81 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/35 (31%), Positives = 15/35 (42%) Frame = -2 Query: 391 CKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCS 287 C GC S C D + A C+ C +C C+ Sbjct: 6 CSVGCDTSYCPDTSSCNCGTFADYCKCCQYCNACA 40
>MT_POTPO (P55952) Metallothionein (MT)| Length = 58 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/37 (29%), Positives = 15/37 (40%) Frame = -2 Query: 430 CSIKCVLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYC 320 C + C+E KCK GC + C P + C Sbjct: 4 CCAEGTCECEEGKCKAGCKCTSCRCSPCEKCTSECEC 40
>MT1_HOMAM (P29499) Metallothionein-1 (CuMT-1)| Length = 58 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Frame = -2 Query: 430 CSIKCVLYCQEEKCKYGCAVSVCEDPPWD------SIPDRAYCCRWCSWCKVCS 287 C KC C E CK GC + C P + P + C + CS K CS Sbjct: 5 CKDKCE--CAEGGCKTGCKCTSCRCAPCEKCTSGCKCPSKDECAKTCS--KPCS 54
>ANTA_HAEGH (P16242) Ghilanten| Length = 119 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = -2 Query: 436 TSCSIKCVLYCQE--EKCKYGCAVSVCEDPPWDSIPDRAYC 320 T ++C +YC ++ +YGC V C P + D + C Sbjct: 27 TCPEVRCRVYCSHGFQRSRYGCEVCRCRTEPMKATCDISEC 67
>POU23_BRARE (P79745) POU domain protein ZP-23| Length = 443 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/57 (35%), Positives = 24/57 (42%) Frame = +3 Query: 204 SLSYPSLT**ETP*LQRIEAQTPCLESSLHTLHQEHQRQQ*ALSGMESHGGSSQTDT 374 SL +P L +TP L S H H +HQ Q A G+ SH S DT Sbjct: 192 SLVHPGLVRGDTPELDH--------SSHHHHHHHQHQHHQQAHHGVNSHDPHSDEDT 240
>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein| 5.8) (Ultrahigh sulfur keratin-associated protein 5.8) (Keratin, ultra high-sulfur matrix protein B) (UHS keratin B) (UHS KerB) Length = 187 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = -2 Query: 433 SCSIKC-VLYCQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDS 278 SCS C CQ CK C+ S C P S + CC+ S CK C S Sbjct: 124 SCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQ-SSCCKPCCSQS 175 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/48 (25%), Positives = 17/48 (35%) Frame = -2 Query: 406 CQEEKCKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 263 C+ C GC S C+ ++ CC+ C C Q C Sbjct: 120 CKPCSCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSC 167 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/43 (27%), Positives = 16/43 (37%) Frame = -2 Query: 391 CKYGCAVSVCEDPPWDSIPDRAYCCRWCSWCKVCSEDSKQGVC 263 C GC S C+ ++ CC+ CS C Q C Sbjct: 96 CSSGCGSSCCQSSCCKPCCSQSSCCKPCSCSSGCGSSCCQSSC 138
>POU1_BRARE (P31366) POU domain protein 1 (ZFPOU1)| Length = 425 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/57 (35%), Positives = 24/57 (42%) Frame = +3 Query: 204 SLSYPSLT**ETP*LQRIEAQTPCLESSLHTLHQEHQRQQ*ALSGMESHGGSSQTDT 374 SL +P L +TP L S H H +HQ Q A G+ SH S DT Sbjct: 192 SLVHPGLVRGDTPELDH--------SSHHHHHHHQHQHHQQAHHGVNSHDPHSDEDT 240 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,228,864 Number of Sequences: 219361 Number of extensions: 1439426 Number of successful extensions: 4127 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4112 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
