Clone Name | rbastl03e12 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full insert mRNA sequence Length = 774 Score = 646 bits (326), Expect = 0.0 Identities = 439/475 (92%), Gaps = 5/475 (1%) Strand = Plus / Minus Query: 16 gatatacaatttatgcgacacaaaatgtccaggatgagtatccctaga---aaattctga 72 ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| Sbjct: 695 gatatacaatttatgcggcacaaaatgtccaggttgagtatccctagaggaaaattctga 636 Query: 73 aaccaagaaactaacagcttaaatacggtaaagtagaagtaacacaataacaacacaata 132 ||||||||||||||||| ||||||||||| | || ||| | ||||||||||||||||| Sbjct: 635 aaccaagaaactaacagtttaaatacggtgatctaatagttatacaataacaacacaata 576 Query: 133 caattcacactaacttccatgaaacagcacagctgt--atgctcataactgaataatttt 190 ||||||||||||||||||||| |||||||| |||| ||||||||||| |||||||||| Sbjct: 575 caattcacactaacttccatggaacagcacgcctgtgtatgctcataaccgaataatttt 516 Query: 191 gacggaatatccatccttaagttacccgtcacttacttgataagagactccatagcttca 250 ||||||||| | ||| | ||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 515 gacggaataccgatcttcaagtttcccgtcacttaattgataagagactccatagcttca 456 Query: 251 aagaatagaggcacaaactccctgtttggagtcttcactgcacactttgcaccaggagca 310 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || Sbjct: 455 aagaatagaggcacaaactccctgtttggagtcttgactgcacacttggcaccaggaaca 396 Query: 311 ccaacggcagcagtaagctctatcaggaatggaatcccacgggggatcttcgcagacaga 370 ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct: 395 ccaacagcagcagtaagctctatcagaaatggaatcccacgggggaccttcgcagacaga 336 Query: 371 tacagcacatccatatttgcatttctcctcttggcaataaagaacacatttgatgctgca 430 |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 335 tacagcacatccatgtttgcatttttccgcttggcaataaagaacacatttgatgctgca 276 Query: 431 agatgttcaatggtggcatctatgctgctgatgacagaattggggtattcttttg 485 || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 aggtgttcaacggtggcatctatgctgctgatgacagaattggggtattcttttg 221
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 192 bits (97), Expect = 7e-46 Identities = 208/245 (84%) Strand = Plus / Plus Query: 225 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 284 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 13561552 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13561611 Query: 285 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 344 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 13561612 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 13561671 Query: 345 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 404 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 13561672 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 13561731 Query: 405 caataaagaacacatttgatgctgcaagatgttcaatggtggcatctatgctgctgatga 464 | |||||||||||||||||||||||||| || |||| ||| |||||||||||||||| || Sbjct: 13561732 cgataaagaacacatttgatgctgcaaggtgctcaacggtcgcatctatgctgctgacga 13561791 Query: 465 cagaa 469 ||||| Sbjct: 13561792 cagaa 13561796
>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0005A11, from chromosome 3, complete sequence Length = 168219 Score = 192 bits (97), Expect = 7e-46 Identities = 208/245 (84%) Strand = Plus / Plus Query: 225 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 284 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 121443 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 121502 Query: 285 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 344 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 121503 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 121562 Query: 345 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 404 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 121563 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 121622 Query: 405 caataaagaacacatttgatgctgcaagatgttcaatggtggcatctatgctgctgatga 464 | |||||||||||||||||||||||||| || |||| ||| |||||||||||||||| || Sbjct: 121623 cgataaagaacacatttgatgctgcaaggtgctcaacggtcgcatctatgctgctgacga 121682 Query: 465 cagaa 469 ||||| Sbjct: 121683 cagaa 121687
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 192 bits (97), Expect = 7e-46 Identities = 208/245 (84%) Strand = Plus / Plus Query: 225 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 284 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 13557427 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13557486 Query: 285 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 344 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 13557487 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 13557546 Query: 345 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 404 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 13557547 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 13557606 Query: 405 caataaagaacacatttgatgctgcaagatgttcaatggtggcatctatgctgctgatga 464 | |||||||||||||||||||||||||| || |||| ||| |||||||||||||||| || Sbjct: 13557607 cgataaagaacacatttgatgctgcaaggtgctcaacggtcgcatctatgctgctgacga 13557666 Query: 465 cagaa 469 ||||| Sbjct: 13557667 cagaa 13557671
>dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087B10, full insert sequence Length = 1904 Score = 192 bits (97), Expect = 7e-46 Identities = 208/245 (84%) Strand = Plus / Minus Query: 225 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 284 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 1728 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1669 Query: 285 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 344 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 1668 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 1609 Query: 345 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 404 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 1608 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 1549 Query: 405 caataaagaacacatttgatgctgcaagatgttcaatggtggcatctatgctgctgatga 464 | |||||||||||||||||||||||||| || |||| ||| |||||||||||||||| || Sbjct: 1548 cgataaagaacacatttgatgctgcaaggtgctcaacggtcgcatctatgctgctgacga 1489 Query: 465 cagaa 469 ||||| Sbjct: 1488 cagaa 1484
>dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007F10, full insert sequence Length = 1842 Score = 192 bits (97), Expect = 7e-46 Identities = 208/245 (84%) Strand = Plus / Minus Query: 225 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 284 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 1479 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1420 Query: 285 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 344 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 1419 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 1360 Query: 345 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 404 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 1359 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 1300 Query: 405 caataaagaacacatttgatgctgcaagatgttcaatggtggcatctatgctgctgatga 464 | |||||||||||||||||||||||||| || |||| ||| |||||||||||||||| || Sbjct: 1299 cgataaagaacacatttgatgctgcaaggtgctcaacggtcgcatctatgctgctgacga 1240 Query: 465 cagaa 469 ||||| Sbjct: 1239 cagaa 1235
>dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A07, full insert sequence Length = 834 Score = 192 bits (97), Expect = 7e-46 Identities = 208/245 (84%) Strand = Plus / Minus Query: 225 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 284 |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| | Sbjct: 546 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 487 Query: 285 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 344 | || |||||||| | |||||| |||| || ||||||||||||||||||||||| || | Sbjct: 486 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 427 Query: 345 tcccacgggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttgg 404 | ||||| || ||||| ||||||| ||||| |||||| | |||| ||| ||||||||| Sbjct: 426 ttccacgcggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttgg 367 Query: 405 caataaagaacacatttgatgctgcaagatgttcaatggtggcatctatgctgctgatga 464 | |||||||||||||||||||||||||| || |||| ||| |||||||||||||||| || Sbjct: 366 cgataaagaacacatttgatgctgcaaggtgctcaacggtcgcatctatgctgctgacga 307 Query: 465 cagaa 469 ||||| Sbjct: 306 cagaa 302
>dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D19, full insert sequence Length = 2979 Score = 186 bits (94), Expect = 5e-44 Identities = 202/238 (84%) Strand = Plus / Minus Query: 232 aagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgc 291 |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| || || || Sbjct: 2706 aagagactccatggcttcgaagaagagagccaccatctccttgtttggagttttgaccgc 2647 Query: 292 acactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaatcccacg 351 |||||| | |||||| |||| || ||||||||||||||||||||||| || || ||||| Sbjct: 2646 acacttcacgccaggaacaccgactgcagcagtaagctctatcaggaaggggattccacg 2587 Query: 352 ggggatcttcgcagacagatacagcacatccatatttgcatttctcctcttggcaataaa 411 || ||||| ||||||| ||||| |||||| | |||| ||| |||||||||| ||||| Sbjct: 2586 cggaatctttgcagacatgtacagaacatccttgtttgagtttttcctcttggcgataaa 2527 Query: 412 gaacacatttgatgctgcaagatgttcaatggtggcatctatgctgctgatgacagaa 469 ||||||||||||||||||||| || |||| ||| |||||||||||||||| ||||||| Sbjct: 2526 gaacacatttgatgctgcaaggtgctcaacggtcgcatctatgctgctgacgacagaa 2469
>gb|AY109428.1| Zea mays CL501_1 mRNA sequence Length = 3187 Score = 153 bits (77), Expect = 6e-34 Identities = 195/236 (82%) Strand = Plus / Plus Query: 233 agagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgca 292 |||| |||||||||||||||||| ||||| || | |||||| ||||| || || |||||| Sbjct: 356 agagcctccatagcttcaaagaagagaggaaccatctccctatttggtgttttgactgca 415 Query: 293 cactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaatcccacgg 352 ||||| |||||||| ||||||| ||||| |||| |||||| ||||| || || |||||| Sbjct: 416 cacttcacaccaggaacaccaaccgcagctgtaacctctataaggaaggggattccacgg 475 Query: 353 gggatcttcgcagacagatacagcacatccatatttgcatttctcctcttggcaataaag 412 || |||||||| || |||||||| |||||||| || ||| || |||||| || ||| Sbjct: 476 ggcatcttcgcggagagatacagaacatccatgttcgcannnnnccgcttggctatgaag 535 Query: 413 aacacatttgatgctgcaagatgttcaatggtggcatctatgctgctgatgacaga 468 ||||||||||||||| | || | |||| || ||||||||||||||||||||||| Sbjct: 536 aacacatttgatgctacgaggcgctcaacagtagcatctatgctgctgatgacaga 591
>gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, complete sequence Length = 95280 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 172 ctcataactgaataattttgac 193 |||||||||||||||||||||| Sbjct: 57533 ctcataactgaataattttgac 57512
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 aaatgtccaggatgagtatccc 59 |||||||||||||||||||||| Sbjct: 7266918 aaatgtccaggatgagtatccc 7266897
>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0062A09 Length = 173541 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 aaatgtccaggatgagtatccc 59 |||||||||||||||||||||| Sbjct: 881 aaatgtccaggatgagtatccc 860
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 aaatgtccaggatgagtatccc 59 |||||||||||||||||||||| Sbjct: 119023 aaatgtccaggatgagtatccc 119002
>gb|AC130666.9| Mus musculus chromosome 5, clone RP24-79O7, complete sequence Length = 172995 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 aacacatttgatgctgcaaga 433 ||||||||||||||||||||| Sbjct: 131452 aacacatttgatgctgcaaga 131472
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54 Length = 198715 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ataacaacacaatacaattca 139 ||||||||||||||||||||| Sbjct: 188407 ataacaacacaatacaattca 188427
>emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project) Length = 89219 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ataacaacacaatacaattca 139 ||||||||||||||||||||| Sbjct: 45130 ataacaacacaatacaattca 45150
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 tggcatctatgctgctgatga 464 ||||||||||||||||||||| Sbjct: 1137364 tggcatctatgctgctgatga 1137384
>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0057M23 Length = 168029 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 tggcatctatgctgctgatga 464 ||||||||||||||||||||| Sbjct: 38971 tggcatctatgctgctgatga 38991
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022B05 Length = 151317 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 tggcatctatgctgctgatga 464 ||||||||||||||||||||| Sbjct: 134952 tggcatctatgctgctgatga 134972
>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete sequence Length = 206914 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 aaaggcaagatatacaattta 28 ||||||||||||||||||||| Sbjct: 50133 aaaggcaagatatacaattta 50153
>dbj|D26096.1|CA3CPRP27A Chrysochromulina alifera chloroplast rpl27 gene for ribosomal protein L27, partial cds Length = 223 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 18 tatacaatttatgcgacacaaaatg 42 |||||||||| |||||||||||||| Sbjct: 146 tatacaatttttgcgacacaaaatg 170
>ref|NM_124186.2| Arabidopsis thaliana unknown protein AT5G48120 mRNA, complete cds Length = 3718 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 tttgatgctgcaagatgttcaatg 442 ||||||||||||||| |||||||| Sbjct: 1397 tttgatgctgcaagaagttcaatg 1374
>ref|NM_202601.1| Arabidopsis thaliana unknown protein AT3G17860 transcript variant AT3G17860.2 mRNA, complete cds Length = 1370 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1087 cacatccatatttgcatttc 1106
>ref|NM_112667.2| Arabidopsis thaliana unknown protein AT3G17860 transcript variant AT3G17860.1 mRNA, complete cds Length = 1580 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1297 cacatccatatttgcatttc 1316
>gb|AC158787.14| Mus musculus chromosome 15, clone RP23-136G8, complete sequence Length = 203772 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tttgcatttctcctcttggc 405 |||||||||||||||||||| Sbjct: 793 tttgcatttctcctcttggc 774
>gb|AC145791.2| Xenopus tropicalis clone CH216-136M10, complete sequence Length = 138176 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cagcacatccatatttgcat 392 |||||||||||||||||||| Sbjct: 116229 cagcacatccatatttgcat 116248
>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence Length = 232320 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aataacaacacaatacaatt 137 |||||||||||||||||||| Sbjct: 151220 aataacaacacaatacaatt 151239
>gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosome 18, complete sequence Length = 208462 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aataacaacacaatacaatt 137 |||||||||||||||||||| Sbjct: 196667 aataacaacacaatacaatt 196648
>emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, complete sequence Length = 31143 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aattctgaaaccaagaaact 84 |||||||||||||||||||| Sbjct: 26630 aattctgaaaccaagaaact 26611
>gb|AC002487.1| Homo sapiens BAC clone CTA-369K23 from 7, complete sequence Length = 181588 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 acagcacatccatatttgcatttc 395 ||||||||| |||||||||||||| Sbjct: 135647 acagcacatacatatttgcatttc 135624
>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7, complete sequence Length = 168455 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tagaagtaacacaataacaa 125 |||||||||||||||||||| Sbjct: 80485 tagaagtaacacaataacaa 80504
>emb|AL359987.13| Human DNA sequence from clone RP11-596A13 on chromosome 6, complete sequence Length = 189370 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 433 atgttcaatggtggcatctatgctgctgatga 464 |||||||||||||||| | |||||| |||||| Sbjct: 174085 atgttcaatggtggcagcgatgctgatgatga 174116
>emb|AL160159.12| Human DNA sequence from clone RP11-71K7 on chromosome 13, complete sequence Length = 129575 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tcaaaggcaagatatacaatttat 29 ||||||||||||| |||||||||| Sbjct: 29688 tcaaaggcaagatttacaatttat 29711
>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3 Contains the 3' part of a novel gene, complete sequence Length = 88509 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 aagtaacacaataacaacacaata 132 |||||||||||||| ||||||||| Sbjct: 22962 aagtaacacaataataacacaata 22939
>gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integration site Length = 1655 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aataacaacacaatacaatt 137 |||||||||||||||||||| Sbjct: 52 aataacaacacaatacaatt 71
>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete sequence Length = 149978 Score = 40.1 bits (20), Expect = 6.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 225 acttgataagagactccatagcttcaaagaatagag 260 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 109697 acttgagaagagactccatggcttcgaagaagagag 109662
>gb|AC159101.2| Mus musculus BAC clone RP24-212G22 from chromosome 9, complete sequence Length = 183017 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gtggcatctatgctgctgat 462 |||||||||||||||||||| Sbjct: 70335 gtggcatctatgctgctgat 70316
>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16, complete sequence Length = 165294 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gtaaagtagaagtaacacaa 119 |||||||||||||||||||| Sbjct: 116674 gtaaagtagaagtaacacaa 116693
>gb|AC079439.26| Mus musculus strain 129/Sv chromosome 2 clone ct7-295g23, complete sequence Length = 115747 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ttccatgaaacagcacagct 166 |||||||||||||||||||| Sbjct: 33060 ttccatgaaacagcacagct 33041
>gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13, complete sequence Length = 201182 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 cctcttggcaataaagaaca 416 |||||||||||||||||||| Sbjct: 169002 cctcttggcaataaagaaca 168983
>dbj|AK136716.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230028P05 product:unclassifiable, full insert sequence Length = 1057 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ttccatgaaacagcacagct 166 |||||||||||||||||||| Sbjct: 543 ttccatgaaacagcacagct 562
>dbj|AK135406.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820415M06 product:Rap guanine nucleotide exchange factor (GEF) 3, full insert sequence Length = 3684 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tttgcatttctcctcttggc 405 |||||||||||||||||||| Sbjct: 630 tttgcatttctcctcttggc 611
>dbj|AK222169.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-30-L21 Length = 1307 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1016 cacatccatatttgcatttc 1035
>gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's Hospital Oakland Research Institute) complete sequence Length = 228097 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ctagaaaattctgaaaccaa 78 |||||||||||||||||||| Sbjct: 16993 ctagaaaattctgaaaccaa 17012
>gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome 14, complete sequence Length = 215658 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 acaataacaacacaatacaattca 139 |||||||||||| ||||||||||| Sbjct: 47726 acaataacaacaaaatacaattca 47749
>gb|AF372907.1|AF372907 Arabidopsis thaliana AT3g17860/MEB5_8 mRNA, complete cds Length = 1578 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1297 cacatccatatttgcatttc 1316
>gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-B, complete sequence Length = 5471 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 aacacaataacaacacaata 132 |||||||||||||||||||| Sbjct: 797 aacacaataacaacacaata 778 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 aacacaataacaacacaata 132 |||||||||||||||||||| Sbjct: 752 aacacaataacaacacaata 733
>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds; alternatively spliced Length = 34001 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 atgctcataactgaataatt 188 |||||||||||||||||||| Sbjct: 22591 atgctcataactgaataatt 22610
>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence Length = 191373 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aaaattctgaaaccaagaaa 82 |||||||||||||||||||| Sbjct: 33949 aaaattctgaaaccaagaaa 33968
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 225 acttgataagagactccatagcttcaaagaatagag 260 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 16491598 acttgagaagagactccatggcttcgaagaagagag 16491563
>emb|BX822774.1|CNS0A63D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 976 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 812 cacatccatatttgcatttc 831
>emb|BX822297.1|CNS0A611 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZB09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1436 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1193 cacatccatatttgcatttc 1212
>emb|BX824913.1|CNS0A5NW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZB08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1087 cacatccatatttgcatttc 1106
>emb|BX824776.1|CNS0A5NG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZB02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1454 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1228 cacatccatatttgcatttc 1247
>emb|BX822695.1|CNS0A5WD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1475 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1226 cacatccatatttgcatttc 1245
>emb|BX824527.1|CNS0A4QA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZC12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1492 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1238 cacatccatatttgcatttc 1257
>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence Length = 118195 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 atgctcataactgaataatt 188 |||||||||||||||||||| Sbjct: 13587 atgctcataactgaataatt 13606
>gb|AY085082.1| Arabidopsis thaliana clone 12707 mRNA, complete sequence Length = 1535 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 1255 cacatccatatttgcatttc 1274
>emb|BX901906.3| Mouse DNA sequence from clone RP23-328F9 on chromosome 2, complete sequence Length = 213629 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ttccatgaaacagcacagct 166 |||||||||||||||||||| Sbjct: 57543 ttccatgaaacagcacagct 57524
>gb|AC113458.10| Mus musculus chromosome 3, clone RP23-372O21, complete sequence Length = 232529 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 agaggcacaaactccctgtt 276 |||||||||||||||||||| Sbjct: 146507 agaggcacaaactccctgtt 146488
>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5 Length = 74968 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cacatccatatttgcatttc 395 |||||||||||||||||||| Sbjct: 33282 cacatccatatttgcatttc 33301
>dbj|AB023039.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIF21 Length = 59372 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 419 tttgatgctgcaagatgttcaatg 442 ||||||||||||||| |||||||| Sbjct: 3719 tttgatgctgcaagaagttcaatg 3742
>dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full insert sequence Length = 575 Score = 40.1 bits (20), Expect = 6.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 225 acttgataagagactccatagcttcaaagaatagag 260 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 399 acttgagaagagactccatggcttcgaagaagagag 364
>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20, complete sequence Length = 158302 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 acaataacaacacaatacaa 135 |||||||||||||||||||| Sbjct: 126271 acaataacaacacaatacaa 126290
>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175725 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 tagaggcacaaactccctgt 275 |||||||||||||||||||| Sbjct: 98529 tagaggcacaaactccctgt 98548
>dbj|AP003530.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-514H18, complete sequence Length = 205804 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 tatttgcatttctcctcttg 403 |||||||||||||||||||| Sbjct: 13697 tatttgcatttctcctcttg 13716
>gb|AC104225.18| Mus musculus chromosome 15, clone RP23-74H8, complete sequence Length = 246325 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 tttgcatttctcctcttggc 405 |||||||||||||||||||| Sbjct: 23035 tttgcatttctcctcttggc 23054
>gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence Length = 122469 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cacactttgcaccaggagca 310 |||||||||||||||||||| Sbjct: 47122 cacactttgcaccaggagca 47103
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16, complete sequence Length = 184760 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gtaaagtagaagtaacacaa 119 |||||||||||||||||||| Sbjct: 47402 gtaaagtagaagtaacacaa 47383 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gtaaagtagaagtaacacaa 119 |||||||||||||||||||| Sbjct: 46938 gtaaagtagaagtaacacaa 46919
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 acatccatatttgcatttct 396 |||||||||||||||||||| Sbjct: 1359986 acatccatatttgcatttct 1360005
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 225 acttgataagagactccatagcttcaaagaatagag 260 |||||| |||||||||||| ||||| ||||| |||| Sbjct: 16499839 acttgagaagagactccatggcttcgaagaagagag 16499804
>emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chromosome 2, complete sequence Length = 233417 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ttccatgaaacagcacagct 166 |||||||||||||||||||| Sbjct: 85626 ttccatgaaacagcacagct 85645
>dbj|AP003181.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-94P11, complete sequence Length = 165611 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 tatttgcatttctcctcttg 403 |||||||||||||||||||| Sbjct: 74368 tatttgcatttctcctcttg 74387 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,842,787 Number of Sequences: 3902068 Number of extensions: 4842787 Number of successful extensions: 94492 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94169 Number of HSP's gapped (non-prelim): 319 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)