>OREX_RAT (O55232) Orexin precursor (Hypocretin) (Hcrt) [Contains: Orexin-A|
           (Hypocretin-1) (Hcrt1); Orexin-B (Hypocretin-2) (Hcrt2)]
          Length = 130

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 298 RQSPIAVDPGPCPGERCPAAFASLM 372
           R++   ++P PCPG RCP A A+ +
Sbjct: 98  RRAGAELEPYPCPGRRCPTATATAL 122

>LAMB3_MOUSE (Q61087) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Kalinin|
           B1 chain)
          Length = 1168

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 298 RQSPIAVDPGPCPGERCPAAFASLMQRHHPGSLKR 402
           R    A  PG CPGE CP    +    H  G+L R
Sbjct: 786 RSRQTACTPGDCPGELCPQDNGTACGSHCRGALPR 820

>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3963

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 423  FGIVDPITL*GSWMVSLHQRCKSCWATLSRT 331
            FGIV    L G++++S   RCK CW +  RT
Sbjct: 1375 FGIVADCILAGAYVLS-QGRCKKCWGSCVRT 1404

>PEPT_HAEIN (P45172) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)|
           (Aminotripeptidase) (Tripeptidase)
          Length = 412

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -3

Query: 418 YRGSDYALGI----LDGVFASEMQKLLGNAL 338
           YRG D ALGI    +  V+ S MQKL+G  L
Sbjct: 104 YRGGDIALGIGEEFISPVYYSFMQKLVGQTL 134

>PEPT_HAEI8 (Q4QK58) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)|
           (Aminotripeptidase) (Tripeptidase)
          Length = 412

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -3

Query: 418 YRGSDYALGI----LDGVFASEMQKLLGNAL 338
           YRG D ALGI    +  V+ S MQKL+G  L
Sbjct: 104 YRGGDIALGIGEEFISPVYYSFMQKLVGQTL 134

>PUR6_CANAL (Q92210) Phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21)|
           (AIR carboxylase) (AIRC)
          Length = 568

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 17  IYTPFKIPNTLFGKHILLATNQLHNFP 97
           +Y P +IP+TL  K  +LA N + +FP
Sbjct: 222 VYAPARIPDTLGQKASILAKNAVKSFP 248

>VIF_FIVPE (P16089) Virion infectivity factor|
          Length = 251

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 243 EC*TVLLLPRRPQQRIERASITDCGGSRSLSWRALPSSFCISDAKTPSRIPKA*SDPRYQ 422
           +C  ++ L   P + ++R ++  CG      WR   +   +S  +TP+ +    S P + 
Sbjct: 186 DCWNLMCLRNSPPKTLQRLAMLACGVPAK-KWRGCCNQRFVSPYRTPADLEVIQSKPSWN 244

Query: 423 ILFS 434
           +L+S
Sbjct: 245 LLWS 248


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,192,484
Number of Sequences: 219361
Number of extensions: 1482633
Number of successful extensions: 3904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3903
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)