ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464489.1| Oryza sativa (japonica cultivar-group), mRNA 133 5e-28
2gb|AY111343.1| Zea mays CL40259_1 mRNA sequence 129 8e-27
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
5gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, c... 46 0.097
6ref|NM_009551.2| Mus musculus zinc finger, A20 domain containing... 46 0.097
7dbj|AK131911.1| Mus musculus adult male tongue cDNA, RIKEN full-... 46 0.097
8dbj|AK076397.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 46 0.097
9dbj|AK018054.1| Mus musculus adult male thymus cDNA, RIKEN full-... 46 0.097
10gb|BC080270.1| Mus musculus cDNA clone IMAGE:6816490, containing... 46 0.097
11emb|BX545857.1|CJ17683CPS Campylobacter jejuni 44 0.38
12emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC... 44 0.38
13gb|AC172371.3| Gallus gallus BAC clone CH261-20I24 from chromoso... 44 0.38
14gb|AY501912.1| Campylobacter jejuni strain TGH 9011 contig013 Tg... 42 1.5
15ref|NM_105567.1| Arabidopsis thaliana unknown protein AT1G68930 ... 40 6.0
16gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, co... 40 6.0
17ref|XM_417045.1| PREDICTED: Gallus gallus similar to KIAA0853 pr... 40 6.0
18gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, co... 40 6.0
19ref|XR_004546.1| PREDICTED: Mus musculus RIKEN cDNA E230002P03 g... 40 6.0
20ref|XR_002334.1| PREDICTED: Mus musculus RIKEN cDNA E230002P03 g... 40 6.0
21ref|XR_005160.1| PREDICTED: Mus musculus RIKEN cDNA E230002P03 g... 40 6.0
22emb|CR932244.1|CNS0KYIZ PAZ and PIWI domain protein, Paramecium ... 40 6.0
23gb|AC103630.10| Mus musculus chromosome 6, clone RP24-358D8, com... 40 6.0
24gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome... 40 6.0
25gb|AC135736.6| Mus musculus BAC clone RP23-251A14 from chromosom... 40 6.0
26gb|AC165163.2| Mus musculus BAC clone RP23-146B12 from chromosom... 40 6.0
27emb|AL593854.6| Human DNA sequence from clone RP11-423B13 on chr... 40 6.0
28emb|AL590491.13| Human DNA sequence from clone RP11-144A16 on ch... 40 6.0
29emb|AL513206.6| Human DNA sequence from clone RP11-382F13 on chr... 40 6.0
30emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on ch... 40 6.0
31emb|X63727.1|MCMDH1A M.crystallinum mRNA for NADP-malate dehydro... 40 6.0
32gb|AC113137.2| Homo sapiens chromosome 18, clone RP11-622J9, com... 40 6.0
33gb|AC106868.5| Homo sapiens BAC clone RP11-174E22 from 4, comple... 40 6.0
34gb|AC037441.12| Homo sapiens chromosome , clone RP11-87E22, comp... 40 6.0
35dbj|AK136409.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 6.0
36gb|AC154208.2| Mus musculus BAC clone RP24-377L12 from chromosom... 40 6.0
37emb|CR386368.1| Gallus gallus finished cDNA, clone ChEST236f12 40 6.0
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
39emb|BX005183.9| Zebrafish DNA sequence from clone CH211-136A14 i... 40 6.0
40gb|AC097477.2| Homo sapiens BAC clone RP11-112L18 from 4, comple... 40 6.0
41gb|AC011665.8|AC011665 Arabidopsis thaliana chromosome 1 BAC T6L... 40 6.0
42gb|AC013277.9| Homo sapiens BAC clone RP11-480N9 from 2, complet... 40 6.0
43dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
44gb|AC167566.1| Mus musculus BAC clone RP24-84B10 from chromosome... 40 6.0
45emb|BX537328.7| Mouse DNA sequence from clone RP23-269E13 on chr... 40 6.0
46emb|BX681417.10| Zebrafish DNA sequence from clone DKEY-161L11 i... 40 6.0
47emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr... 40 6.0
48emb|BX005192.7| Human DNA sequence from clone RP11-211N15 on chr... 40 6.0
49gb|AC134389.4| Homo sapiens chromosome 8, clone CTD-2228A5, comp... 40 6.0 
>ref|XM_464489.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3009

 Score =  133 bits (67), Expect = 5e-28
 Identities = 142/167 (85%)
 Strand = Plus / Minus

                                                                        
Query: 278  tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 337
            |||||| |||||||| || || || | |||||| ||||||||||| |||||| |||||||
Sbjct: 3009 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 2950

                                                                        
Query: 338  gagagcgttgcccagcagcttttgcatctctgatgcaaagacaccatccaggatccctaa 397
             || | |||||| ||  |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 2949 cagggagttgcctagatgcttttgcatttctgatgcaaagacatcgtccaggatccctaa 2890

                                                           
Query: 398  agcgtaatcggatccacgataccaaatcctgttctcctttctgctct 444
             || ||||| ||||| |  ||||||||||||||||| ||||||||||
Sbjct: 2889 tgcataatcagatcctctgtaccaaatcctgttctcttttctgctct 2843
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>gb|AY111343.1| Zea mays CL40259_1 mRNA sequence
          Length = 804

 Score =  129 bits (65), Expect = 8e-27
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                       
Query: 297 gcgtcaatcaccgattgcggtggatccaggtccttgtcctggagagcgttgcccagcagc 356
           ||||||||||| || |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 510 gcgtcaatcactgactgcggtggatccaggtccttgtcctgcagagcgctgcccagcagc 451

                                                
Query: 357 ttttgcatctctgatgcaaagacaccatccaggatcc 393
           ||||||||||| |||||||||||| | || |||||||
Sbjct: 450 ttttgcatctccgatgcaaagacatcgtcaaggatcc 414
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Plus

                                                                           
Query: 278     tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 337
               |||||| |||||||| || || || | |||||| ||||||||||| |||||| |||||||
Sbjct: 5511434 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 5511493

                                                                      
Query: 338     gagagcgttgcccagcagcttttgcatctctgatgcaaagacaccatccaggatc 392
                || | |||||| ||  |||||||||| ||||||||||||||| | |||||||||
Sbjct: 5511494 cagggagttgcctagatgcttttgcatttctgatgcaaagacatcgtccaggatc 5511548



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                    
Query: 392     ccctaaagcgtaatcggatccacgataccaaatcctgttctcctttctgctct 444
               |||||| || ||||| ||||| |  ||||||||||||||||| ||||||||||
Sbjct: 5511952 ccctaatgcataatcagatcctctgtaccaaatcctgttctcttttctgctct 5512004
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>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0026H03
          Length = 151827

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Plus

                                                                         
Query: 278   tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 337
             |||||| |||||||| || || || | |||||| ||||||||||| |||||| |||||||
Sbjct: 56169 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 56228

                                                                    
Query: 338   gagagcgttgcccagcagcttttgcatctctgatgcaaagacaccatccaggatc 392
              || | |||||| ||  |||||||||| ||||||||||||||| | |||||||||
Sbjct: 56229 cagggagttgcctagatgcttttgcatttctgatgcaaagacatcgtccaggatc 56283



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 392   ccctaaagcgtaatcggatccacgataccaaatcctgttctcctttctgctct 444
             |||||| || ||||| ||||| |  ||||||||||||||||| ||||||||||
Sbjct: 56687 ccctaatgcataatcagatcctctgtaccaaatcctgttctcttttctgctct 56739
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>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence
          Length = 245390

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 253    cggttcttctcctaccccgccgccctc 279
              ||||||||||||| |||||||||||||
Sbjct: 101928 cggttcttctcctcccccgccgccctc 101954
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>ref|NM_009551.2| Mus musculus zinc finger, A20 domain containing 2 (Za20d2), mRNA
          Length = 2835

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 253 cggttcttctcctaccccgccgccctc 279
           ||||||||||||| |||||||||||||
Sbjct: 238 cggttcttctcctcccccgccgccctc 264
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>dbj|AK131911.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310021N08 product:zinc finger protein
           216, full insert sequence
          Length = 2559

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 253 cggttcttctcctaccccgccgccctc 279
           ||||||||||||| |||||||||||||
Sbjct: 232 cggttcttctcctcccccgccgccctc 258
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>dbj|AK076397.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732491G13 product:zinc finger protein
           216, full insert sequence
          Length = 2835

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 253 cggttcttctcctaccccgccgccctc 279
           ||||||||||||| |||||||||||||
Sbjct: 238 cggttcttctcctcccccgccgccctc 264
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>dbj|AK018054.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830475F03 product:zinc finger protein
           216, full insert sequence
          Length = 1589

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 253 cggttcttctcctaccccgccgccctc 279
           ||||||||||||| |||||||||||||
Sbjct: 254 cggttcttctcctcccccgccgccctc 280
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>gb|BC080270.1| Mus musculus cDNA clone IMAGE:6816490, containing frame-shift
           errors
          Length = 2572

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 253 cggttcttctcctaccccgccgccctc 279
           ||||||||||||| |||||||||||||
Sbjct: 219 cggttcttctcctcccccgccgccctc 245
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>emb|BX545857.1|CJ17683CPS Campylobacter jejuni
          Length = 36233

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 16    aatatacactccttttaaaatt 37
             ||||||||||||||||||||||
Sbjct: 16301 aatatacactccttttaaaatt 16322
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>emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              5/6
          Length = 263335

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 16     aatatacactccttttaaaatt 37
              ||||||||||||||||||||||
Sbjct: 142353 aatatacactccttttaaaatt 142374
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>gb|AC172371.3| Gallus gallus BAC clone CH261-20I24 from chromosome ul, complete sequence
          Length = 237701

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 236    tccatctgaatgttagacggttcttctcct 265
              |||| ||||||||||||| |||||||||||
Sbjct: 184037 tccagctgaatgttagacagttcttctcct 184008
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>gb|AY501912.1| Campylobacter jejuni strain TGH 9011 contig013 Tgh012 gene, partial
            cds
          Length = 1586

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 17   atatacactccttttaaaatt 37
            |||||||||||||||||||||
Sbjct: 1430 atatacactccttttaaaatt 1410
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>ref|NM_105567.1| Arabidopsis thaliana unknown protein AT1G68930 mRNA, complete cds
          Length = 2232

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 359 ttgcatctctgatgcaaaga 378
           ||||||||||||||||||||
Sbjct: 564 ttgcatctctgatgcaaaga 583
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>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence
          Length = 219244

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ctaaacaaagcaaaaccgaa 199
              ||||||||||||||||||||
Sbjct: 193020 ctaaacaaagcaaaaccgaa 193039
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>ref|XM_417045.1| PREDICTED: Gallus gallus similar to KIAA0853 protein (LOC418850),
           mRNA
          Length = 5480

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  attttcctcttcactttctg 109
           ||||||||||||||||||||
Sbjct: 656 attttcctcttcactttctg 637
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>gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, complete sequence
          Length = 182696

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   aaagcaaaaccgaagtttaa 205
             ||||||||||||||||||||
Sbjct: 75743 aaagcaaaaccgaagtttaa 75724
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>ref|XR_004546.1| PREDICTED: Mus musculus RIKEN cDNA E230002P03 gene (E230002P03Rik),
           misc RNA
          Length = 3286

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 gatgcaaagacaccatccag 388
           ||||||||||||||||||||
Sbjct: 787 gatgcaaagacaccatccag 768
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>ref|XR_002334.1| PREDICTED: Mus musculus RIKEN cDNA E230002P03 gene (E230002P03Rik),
           misc RNA
          Length = 1619

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 gatgcaaagacaccatccag 388
           ||||||||||||||||||||
Sbjct: 787 gatgcaaagacaccatccag 768
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>ref|XR_005160.1| PREDICTED: Mus musculus RIKEN cDNA E230002P03 gene (E230002P03Rik),
           misc RNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 gatgcaaagacaccatccag 388
           ||||||||||||||||||||
Sbjct: 494 gatgcaaagacaccatccag 475
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>emb|CR932244.1|CNS0KYIZ PAZ and PIWI domain protein, Paramecium tetraurelia macronuclear
           gene
          Length = 2656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 24  ctccttttaaaattccaaatacactctttgga 55
           ||||||||||| || ||||| |||||||||||
Sbjct: 840 ctccttttaaattttcaaattcactctttgga 809
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>gb|AC103630.10| Mus musculus chromosome 6, clone RP24-358D8, complete sequence
          Length = 184937

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aattacacaattttcctctt 100
             ||||||||||||||||||||
Sbjct: 27874 aattacacaattttcctctt 27855
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>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence
          Length = 144545

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   ctaaacaaagcaaaaccgaa 199
             ||||||||||||||||||||
Sbjct: 43105 ctaaacaaagcaaaaccgaa 43124
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>gb|AC135736.6| Mus musculus BAC clone RP23-251A14 from chromosome 16, complete
             sequence
          Length = 193253

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 410   tccacgataccaaatcctgttctccttt 437
             ||||| |||||||||||||||| |||||
Sbjct: 80814 tccaccataccaaatcctgttccccttt 80787
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>gb|AC165163.2| Mus musculus BAC clone RP23-146B12 from chromosome 14, complete
            sequence
          Length = 178254

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 80   caattacacaattttcctct 99
            ||||||||||||||||||||
Sbjct: 8334 caattacacaattttcctct 8353
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>emb|AL593854.6| Human DNA sequence from clone RP11-423B13 on chromosome 6 Contains the
             5' part of a novel gene, complete sequence
          Length = 166869

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    cttttaaaattccaaataca 46
             ||||||||||||||||||||
Sbjct: 74586 cttttaaaattccaaataca 74567
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>emb|AL590491.13| Human DNA sequence from clone RP11-144A16 on chromosome 9 Contains a
             pseudogene similar to part of contactin associated protein
             family, a novel pseudogene, the gene for a novel protein
             similar to chromosome 9 open reading frame 36 (C9orf36),
             two novel genes, a 6-pyruvoyltetrahydropterin synthase
             (PTS) pseudogene and a CpG island, complete sequence
          Length = 174366

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tccttttaaaattccaaata 44
             ||||||||||||||||||||
Sbjct: 32420 tccttttaaaattccaaata 32401
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>emb|AL513206.6| Human DNA sequence from clone RP11-382F13 on chromosome 1 Contains
            part of the VAV3 gene for VAV3 oncogene, complete
            sequence
          Length = 108124

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 40   aaatacactctttggaaagcacat 63
            ||||||| ||||||||||||||||
Sbjct: 3719 aaatacattctttggaaagcacat 3742
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>emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on chromosome 13 Contains a
             ubiquitin pseudogene, complete sequence
          Length = 105783

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 148   acatctctacatgtatacataaat 171
             |||| |||||||||||||||||||
Sbjct: 57260 acatatctacatgtatacataaat 57283
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>emb|X63727.1|MCMDH1A M.crystallinum mRNA for NADP-malate dehydrogenase
          Length = 1747

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 274 gccctcaacaaaggatagaacgag 297
           ||||||||||||||||| ||||||
Sbjct: 554 gccctcaacaaaggatataacgag 531
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>gb|AC113137.2| Homo sapiens chromosome 18, clone RP11-622J9, complete sequence
          Length = 167694

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    tctacatgtatacataaatt 172
              ||||||||||||||||||||
Sbjct: 119216 tctacatgtatacataaatt 119235
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>gb|AC106868.5| Homo sapiens BAC clone RP11-174E22 from 4, complete sequence
          Length = 136000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    acaattttcctcttcacttt 106
             ||||||||||||||||||||
Sbjct: 82848 acaattttcctcttcacttt 82829
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>gb|AC037441.12| Homo sapiens chromosome , clone RP11-87E22, complete sequence
          Length = 163147

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    cctgttctcctttctgctct 444
              ||||||||||||||||||||
Sbjct: 121369 cctgttctcctttctgctct 121388
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>dbj|AK136409.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030008F08 product:hypothetical
           Leucine-rich repeat/Leucine-rich repeat, ribonuclease
           inhibitor subtype containing protein, full insert
           sequence
          Length = 3265

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 369 gatgcaaagacaccatccag 388
           ||||||||||||||||||||
Sbjct: 766 gatgcaaagacaccatccag 747
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>gb|AC154208.2| Mus musculus BAC clone RP24-377L12 from chromosome 16, complete sequence
          Length = 178006

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     tacactctttggaaagcaca 62
              ||||||||||||||||||||
Sbjct: 122732 tacactctttggaaagcaca 122713
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>emb|CR386368.1| Gallus gallus finished cDNA, clone ChEST236f12
          Length = 2149

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   ctctttggaaagcacatctt 66
            ||||||||||||||||||||
Sbjct: 1822 ctctttggaaagcacatctt 1803
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 32      aaaattccaaatacactctt 51
               ||||||||||||||||||||
Sbjct: 2474215 aaaattccaaatacactctt 2474196
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>emb|BX005183.9| Zebrafish DNA sequence from clone CH211-136A14 in linkage group 3,
              complete sequence
          Length = 168366

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    taaacaaagcaaaaccgaag 200
              ||||||||||||||||||||
Sbjct: 120238 taaacaaagcaaaaccgaag 120219
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>gb|AC097477.2| Homo sapiens BAC clone RP11-112L18 from 4, complete sequence
          Length = 59853

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   atggagacatctctacatgtatac 165
             |||||||| |||||||||||||||
Sbjct: 16658 atggagacctctctacatgtatac 16681
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>gb|AC011665.8|AC011665 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete
             sequence
          Length = 100515

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   ttgcatctctgatgcaaaga 378
             ||||||||||||||||||||
Sbjct: 60517 ttgcatctctgatgcaaaga 60536
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>gb|AC013277.9| Homo sapiens BAC clone RP11-480N9 from 2, complete sequence
          Length = 98734

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    cttttaaaattccaaataca 46
             ||||||||||||||||||||
Sbjct: 65044 cttttaaaattccaaataca 65063
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>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0416D03
          Length = 157112

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    aaaattccaaatacactctt 51
             ||||||||||||||||||||
Sbjct: 28636 aaaattccaaatacactctt 28617
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>gb|AC167566.1| Mus musculus BAC clone RP24-84B10 from chromosome 14, complete sequence
          Length = 187792

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    caattacacaattttcctct 99
             ||||||||||||||||||||
Sbjct: 17099 caattacacaattttcctct 17080
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>emb|BX537328.7| Mouse DNA sequence from clone RP23-269E13 on chromosome 4, complete
            sequence
          Length = 16634

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  ttagcagagatccatctgaa 245
            ||||||||||||||||||||
Sbjct: 3807 ttagcagagatccatctgaa 3788
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>emb|BX681417.10| Zebrafish DNA sequence from clone DKEY-161L11 in linkage group 2,
             complete sequence
          Length = 233760

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    aaatatacactccttttaaaattc 38
             |||||||||| |||||||||||||
Sbjct: 28786 aaatatacacaccttttaaaattc 28809
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>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
              sequence
          Length = 268616

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    aaagcaaaaccgaagtttaa 205
              ||||||||||||||||||||
Sbjct: 161275 aaagcaaaaccgaagtttaa 161256
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>emb|BX005192.7| Human DNA sequence from clone RP11-211N15 on chromosome 9, complete
             sequence
          Length = 163795

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tccttttaaaattccaaata 44
             ||||||||||||||||||||
Sbjct: 21933 tccttttaaaattccaaata 21914
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>gb|AC134389.4| Homo sapiens chromosome 8, clone CTD-2228A5, complete sequence
          Length = 71310

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   cctgttctcctttctgctct 444
             ||||||||||||||||||||
Sbjct: 65074 cctgttctcctttctgctct 65055


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,851,657
Number of Sequences: 3902068
Number of extensions: 4851657
Number of successful extensions: 118968
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118810
Number of HSP's gapped (non-prelim): 158
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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