>RM04_YEAST (P36517) 60S ribosomal protein L4, mitochondrial precursor (YmL4)|
           (MRP-L4)
          Length = 319

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
 Frame = +1

Query: 88  LRDATKFTVANR-----PSNSKRIKSNLTTATKQL----PKPPVDPILSCPNERPIWLF- 237
           LR  TKFT         P +  R  + LT  +  L    P PP    L CP++ P+W F 
Sbjct: 13  LRARTKFTKPKPKQPVLPKDKIRPPTQLTHHSNNLRITEPIPPTTSNLRCPDDHPLWQFF 72

Query: 238 -HLP*INSYGPLPRSAHPIPSSFSPIK 315
            +   I S   LP S+H  P S   ++
Sbjct: 73  SNKKFIRSADDLPPSSHIRPWSIPELR 99

>Y485_PSEAE (Q9I633) Hypothetical protein PA0485|
          Length = 298

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 182 SLPWIQFFLVPTKGPFGYFTSLKSIPTAHYPGRPIQFHLLFPLS 313
           SLPW+   L  T G +G     K  P A  PG  ++  LL PL+
Sbjct: 149 SLPWVSLVLALTFGFYGLIR--KKAPVAALPGLVVETWLLLPLA 190

>SID2_USTMA (O43103) Ferrichrome siderophore peptide synthetase (EC 6.-.-.-)|
          Length = 3947

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 147 FYSFGIGGTICNCKLGGVSQ 88
           FY++G+GGTIC+C  G + Q
Sbjct: 478 FYTWGLGGTICSCPRGVLLQ 497

>COAT_MUMIV (P03137) Coat protein VP1 [Contains: Coat protein VP2]|
          Length = 716

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 216 RKAHLVISPPLNQFLRPITPVGPSNSIFF 302
           + A LV+ PPLN  L    P+G  N I F
Sbjct: 544 QSAPLVVPPPLNGILTNANPIGTKNDIHF 572

>COAT_MUMIM (P07302) Coat protein VP1 [Contains: Coat protein VP2]|
          Length = 718

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 216 RKAHLVISPPLNQFLRPITPVGPSNSIFF 302
           + A LV+ PPLN  L    P+G  N I F
Sbjct: 546 QSAPLVVPPPLNGILTNANPIGTKNDIHF 574

>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC|
           2.7.11.25) (NF-kappa beta-inducing kinase)
           (Serine/threonine-protein kinase NIK)
          Length = 942

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 175 LPKPPVDPILS---CPNERPIWLFHLP*INSYGPLPRSAHPIPSSFSP 309
           LP+P +  ++S   C N   +W  H P   + GP P   HP P S  P
Sbjct: 221 LPRPELHKLISPLQCLNH--VWKLHHP--QATGPRPHPTHPFPYSGMP 264

>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)|
           (Fragment)
          Length = 461

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 440 GGRKVALGGHTLHVGDLKHTVELR 369
           G R++ LG H L +GDL H V L+
Sbjct: 430 GIRRIPLGEHKLQIGDLSHHVSLQ 453


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,956,447
Number of Sequences: 219361
Number of extensions: 1426400
Number of successful extensions: 3684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3678
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)