ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CFA_ECOLI (P0A9H7) Cyclopropane-fatty-acyl-phospholipid synthase... 36 0.047
2CFA_ECOL6 (P0A9H8) Cyclopropane-fatty-acyl-phospholipid synthase... 36 0.047
3CFA_CITFR (P45509) Cyclopropane-fatty-acyl-phospholipid synthase... 31 1.5
4SYA_PROMP (Q7V3N0) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 28 7.6
5PRPC2_CORGL (Q8NSL1) 2-methylcitrate synthase 2 (EC 2.3.3.5) (Me... 28 9.9

>CFA_ECOLI (P0A9H7) Cyclopropane-fatty-acyl-phospholipid synthase (EC|
           2.1.1.79) (Cyclopropane fatty acid synthase) (CFA
           synthase)
          Length = 381

 Score = 35.8 bits (81), Expect = 0.047
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = -3

Query: 411 LALGFDERFLRIWEYYLIFSAAGFKSRAIGDYQVVFSR 298
           +A  + ERF R++ YYL   A  F++R I  +QVVFSR
Sbjct: 334 IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 371



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>CFA_ECOL6 (P0A9H8) Cyclopropane-fatty-acyl-phospholipid synthase (EC|
           2.1.1.79) (Cyclopropane fatty acid synthase) (CFA
           synthase)
          Length = 381

 Score = 35.8 bits (81), Expect = 0.047
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = -3

Query: 411 LALGFDERFLRIWEYYLIFSAAGFKSRAIGDYQVVFSR 298
           +A  + ERF R++ YYL   A  F++R I  +QVVFSR
Sbjct: 334 IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 371



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>CFA_CITFR (P45509) Cyclopropane-fatty-acyl-phospholipid synthase (EC|
           2.1.1.79) (Cyclopropane fatty acid synthase) (CFA
           synthase) (Fragment)
          Length = 89

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 411 LALGFDERFLRIWEYYLIFSAAGFKSRAIGDYQVVFSR 298
           L+  +   F R++ YYL   A  F++R I  +QV+FSR
Sbjct: 42  LSSRYSATFRRMFNYYLCACAGAFRARDIELWQVLFSR 79



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>SYA_PROMP (Q7V3N0) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 886

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 145 NHLSRIRA*ANHSRTDLLKSRTVLTSNDSAAER 243
           N L+R +A ANH+ T LL+S   +  N+S  ++
Sbjct: 553 NDLARAKAAANHTATHLLQSALKVVVNESVGQK 585



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>PRPC2_CORGL (Q8NSL1) 2-methylcitrate synthase 2 (EC 2.3.3.5) (Methylcitrate|
           synthase 2) (Citrate synthase 2)
          Length = 383

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 116 AWLNNKIDHQTT*VGFGH 169
           AW+NN +D++   +GFGH
Sbjct: 252 AWINNALDNKNVVMGFGH 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,141,428
Number of Sequences: 219361
Number of extensions: 1363844
Number of successful extensions: 2568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2568
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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