ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPA12_RAT (Q8R4Z1) Serpin A12 precursor (Visceral adipose-specif... 35 0.084
2YCF80_GUITH (O78449) Hypothetical 33.2 kDa protein ycf80 30 3.5
3CRY2_VIBCH (Q9KS67) Cryptochrome-like protein cry2 30 4.6
4SPA12_MOUSE (Q7TMF5) Serpin A12 precursor (Visceral adipose-spec... 29 6.0
5FLHC_YEREN (O86047) Flagellar transcriptional activator flhC 29 6.0

>SPA12_RAT (Q8R4Z1) Serpin A12 precursor (Visceral adipose-specific serpin)|
           (Visceral adipose tissue-derived serine protease
           inhibitor) (Vaspin)
          Length = 411

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
 Frame = +1

Query: 142 EITCTVL*LQGRGNLTATMTMPN---LHLHTACAQT*VKS------CKTMHD*SRP---- 282
           +++CT+L +  RGN+TAT  +P+   L L     Q  + +       K + D   P    
Sbjct: 254 QLSCTILEMPYRGNITATFVLPDSGKLRLLEQGLQADIFAKWKSLLSKRVVDVWVPRLHI 313

Query: 283 TAFSGNQQ*ISTLPLNKLMESHLPLERFSRRPLLISGDLVHEALLNKN 426
           +A    ++ +S L ++K+ E H  L R S    L  G+ VH+A L  N
Sbjct: 314 SATYNMKKVLSRLGISKIFEEHGDLTRISSHRSLKVGEAVHKAELRMN 361



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>YCF80_GUITH (O78449) Hypothetical 33.2 kDa protein ycf80|
          Length = 282

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 51  EILQTFPTKKNSRISIRSFLKYNSGCFKLIGDYMYSFIITG-SWELDSN 194
           EI        NSR+S     KY+   FK I  ++YS  +T   W L SN
Sbjct: 216 EIKNILNVNSNSRVSFHPKQKYDKNWFKGIPIFIYSPTVTNLDWTLKSN 264



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>CRY2_VIBCH (Q9KS67) Cryptochrome-like protein cry2|
          Length = 504

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = -3

Query: 310 SIAGFQRMLWAYSNRASF-CNF*LRSVHRRCE----DVNLAWSSLLSSSHD 173
           S+AGF+R L A S+R  + C+F ++     CE     VN A+ SLL  S D
Sbjct: 253 SVAGFRRSLIALSSRLHWHCHF-IQKFESECEMEFRCVNRAYDSLLQQSSD 302



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>SPA12_MOUSE (Q7TMF5) Serpin A12 precursor (Visceral adipose-specific serpin)|
           (Visceral adipose tissue-derived serine protease
           inhibitor) (Vaspin)
          Length = 413

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
 Frame = +1

Query: 142 EITCTVL*LQGRGNLTATMTMPN---LHLHTACAQT*VKS------CKTMHD*SRP---- 282
           +++CT+L +  RGN+TAT  +P+   L L     Q  + +       K + D   P    
Sbjct: 254 QLSCTILEIPYRGNITATFVLPDNGKLKLLEQGLQADIFAKWKSLLSKRVVDVWVPKLRI 313

Query: 283 TAFSGNQQ*ISTLPLNKLMESHLPLERFSRRPLLISGDLVHEALL 417
           ++    ++ +S L ++K+ E +  L R S    L  G+ VH+A L
Sbjct: 314 SSTYNMKKVLSRLGISKIFEENGDLTRISSHRSLKVGEAVHKAEL 358



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>FLHC_YEREN (O86047) Flagellar transcriptional activator flhC|
          Length = 193

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -1

Query: 375 PPTKSFKRQMTLHEFVQRQCTDLLLVSRECCGPTLIVHRFATFNSGLCT 229
           PP  +  R  TL  FV      L L    CCG T I H     NS +C+
Sbjct: 113 PPLLALTRAWTLVRFVDSGM--LQLSGCNCCGGTFITHAHQPRNSFVCS 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,278,161
Number of Sequences: 219361
Number of extensions: 1355456
Number of successful extensions: 2705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2704
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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