ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03e06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC123826.4| Mus musculus BAC clone RP24-97K3 from chromosome 8, complete sequence Length = 188704 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 332 aactcatggagagtcatctgcctct 356 ||||||||||||||||||||||||| Sbjct: 135200 aactcatggagagtcatctgcctct 135176
>gb|AC129606.4| Mus musculus BAC clone RP23-128L6 from 8, complete sequence Length = 235915 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 332 aactcatggagagtcatctgcctct 356 ||||||||||||||||||||||||| Sbjct: 656 aactcatggagagtcatctgcctct 632
>emb|AJ315897.2|MMU315897 Mus musculus partial DCBCK gene for dendritic cell and B cell derived chemokine, promoter region and exon 1-3 Length = 11728 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 332 aactcatggagagtcatctgcctct 356 ||||||||||||||||||||||||| Sbjct: 6428 aactcatggagagtcatctgcctct 6404
>gb|AC126262.4| Mus musculus BAC clone RP23-359F12 from chromosome 12, complete sequence Length = 208710 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 330 caaactcatggagagtcatctgcctct 356 |||||||||||||| |||||||||||| Sbjct: 166180 caaactcatggagattcatctgcctct 166206
>gb|AC167405.5| Mus musculus chromosome 18, clone wi1-977A17, complete sequence Length = 41204 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 cacaccgcctgtgcacagacc 240 ||||||||||||||||||||| Sbjct: 1705 cacaccgcctgtgcacagacc 1725
>gb|AC119181.11| Mus musculus chromosome 18, clone RP24-111I16, complete sequence Length = 195506 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 cacaccgcctgtgcacagacc 240 ||||||||||||||||||||| Sbjct: 189645 cacaccgcctgtgcacagacc 189665
>gb|AC147883.2| Xenopus tropicalis clone CH216-117C13, complete sequence Length = 165987 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 tacatgtacagttttataattacag 171 ||||||||| ||||||||||||||| Sbjct: 43206 tacatgtactgttttataattacag 43230
>gb|AC132095.3| Mus musculus BAC clone RP24-381M10 from chromosome 17, complete sequence Length = 187926 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 acagaaatactacaaacattt 68 ||||||||||||||||||||| Sbjct: 46043 acagaaatactacaaacattt 46063
>gb|AC121864.1| Mus musculus BAC clone RP24-111L8 from 17, complete sequence Length = 194372 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 acagaaatactacaaacattt 68 ||||||||||||||||||||| Sbjct: 190292 acagaaatactacaaacattt 190312
>emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chromosome 11 Contains the gene for a novel protein similar to smoothelin Smtn, three novel genes, the Mybbp1a gene for MYB binding protein (P160) 1a, a ribosomal protein 7a (Rpl7a) pseudogene, the 5' end of the Ube2g1 gene for ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) and four CpG islands, complete sequence Length = 258521 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 aactcatggagagtcatctgcctct 356 |||||||||||| |||||||||||| Sbjct: 160730 aactcatggagattcatctgcctct 160754
>gb|AC084760.2| Gallus gallus clone WAG-65N20, complete sequence Length = 109569 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 cagacaaaagttccagggaag 455 ||||||||||||||||||||| Sbjct: 80806 cagacaaaagttccagggaag 80786
>gb|AC163701.4| Gallus gallus BAC clone CH261-117C7 from chromosome unknown, complete sequence Length = 239874 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 cagacaaaagttccagggaag 455 ||||||||||||||||||||| Sbjct: 49755 cagacaaaagttccagggaag 49775
>gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromosome unknown, complete sequence Length = 209348 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 cagacaaaagttccagggaag 455 ||||||||||||||||||||| Sbjct: 197153 cagacaaaagttccagggaag 197173
>gb|AC167012.3| Mus musculus BAC clone RP23-416A5 from chromosome 13, complete sequence Length = 193916 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 ggagctttctaaaatacaacagcg 123 |||||||||||||||||| ||||| Sbjct: 85374 ggagctttctaaaatacatcagcg 85351
>gb|AC151805.20| Medicago truncatula clone mth2-59n17, complete sequence Length = 143937 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 gaaatactacaaacatttcc 70 |||||||||||||||||||| Sbjct: 40330 gaaatactacaaacatttcc 40349
>gb|AC170084.13| Medicago truncatula clone mth2-156k10, complete sequence Length = 143943 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gaaatactacaaacatttcc 70 |||||||||||||||||||| Sbjct: 103611 gaaatactacaaacatttcc 103592
>ref|XM_455887.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F17996g predicted mRNA Length = 2055 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 tttgaacaaactcatggaga 343 |||||||||||||||||||| Sbjct: 616 tttgaacaaactcatggaga 635
>gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete sequence Length = 89097 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aacaaaaatggagcttgcag 437 |||||||||||||||||||| Sbjct: 41651 aacaaaaatggagcttgcag 41670
>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete sequence Length = 162676 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tctctggaaaccagcaatag 309 |||||||||||||||||||| Sbjct: 923 tctctggaaaccagcaatag 904
>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence Length = 182661 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tctctggaaaccagcaatag 309 |||||||||||||||||||| Sbjct: 55530 tctctggaaaccagcaatag 55549
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 acgacagaaatactacaaac 64 |||||||||||||||||||| Sbjct: 4896509 acgacagaaatactacaaac 4896528
>emb|AL589745.8| Human DNA sequence from clone RP11-478K15 on chromosome 13 Contains parts of four novel genes, the 5' end of a novel gene and a CpG island, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ttccagggaaggtacacata 464 |||||||||||||||||||| Sbjct: 21026 ttccagggaaggtacacata 21045
>gb|AE017158.1| Chlamydophila pneumoniae TW-183, section 2 of 4 of the complete genome Length = 300380 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 gagcttgcagacaaaagttccagg 451 |||||||||||||||| ||||||| Sbjct: 268069 gagcttgcagacaaaacttccagg 268046
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 tttgaacaaactcatggaga 343 |||||||||||||||||||| Sbjct: 1646207 tttgaacaaactcatggaga 1646226
>gb|AC162038.6| Mus musculus 6 BAC RP24-576J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 175787 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 attgcctttgaacaaactcatgga 341 ||||||||||||| |||||||||| Sbjct: 40154 attgcctttgaaccaactcatgga 40131
>emb|CR354603.12| Zebrafish DNA sequence from clone CH211-106J11 in linkage group 24, complete sequence Length = 159582 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgcaagtcactggcattggt 43 |||||||||||||||||||| Sbjct: 39857 tgcaagtcactggcattggt 39876
>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence Length = 129518 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gaaatactacaaacatttcc 70 |||||||||||||||||||| Sbjct: 2093 gaaatactacaaacatttcc 2074
>gb|AC107992.3| Homo sapiens chromosome 15, clone RP11-150L8, complete sequence Length = 149015 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ttttaagctcattggagatt 147 |||||||||||||||||||| Sbjct: 61370 ttttaagctcattggagatt 61389
>gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, complete sequence Length = 177522 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tagtattaggagctttctaa 111 |||||||||||||||||||| Sbjct: 73742 tagtattaggagctttctaa 73761
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 gagcttgcagacaaaagttccagg 451 |||||||||||||||| ||||||| Sbjct: 269975 gagcttgcagacaaaacttccagg 269998
>gb|AC022740.4|AC022740 Homo sapiens chromosome 15, clone RP11-617D22, complete sequence Length = 162482 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ttttaagctcattggagatt 147 |||||||||||||||||||| Sbjct: 99619 ttttaagctcattggagatt 99638
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ctcattggagattacatgta 154 |||||||||||||||||||| Sbjct: 26250351 ctcattggagattacatgta 26250332
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 attacatgtacagttttataatta 168 |||||||||| ||||||||||||| Sbjct: 39427 attacatgtatagttttataatta 39450
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 gagcttgcagacaaaagttccagg 451 |||||||||||||||| ||||||| Sbjct: 571611 gagcttgcagacaaaacttccagg 571588
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455H11 Length = 101607 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ctcattggagattacatgta 154 |||||||||||||||||||| Sbjct: 24979 ctcattggagattacatgta 24960
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 gagcttgcagacaaaagttccagg 451 |||||||||||||||| ||||||| Sbjct: 570930 gagcttgcagacaaaacttccagg 570907
>gb|AC131101.3| Mus musculus BAC clone RP23-60O18 from 6, complete sequence Length = 182176 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 attgcctttgaacaaactcatgga 341 ||||||||||||| |||||||||| Sbjct: 147778 attgcctttgaaccaactcatgga 147755
>emb|BX248136.12| Zebrafish DNA sequence from clone DKEY-81B15 in linkage group 20, complete sequence Length = 222316 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tgtacagttttataattaca 170 |||||||||||||||||||| Sbjct: 74167 tgtacagttttataattaca 74148
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ctcattggagattacatgta 154 |||||||||||||||||||| Sbjct: 142209 ctcattggagattacatgta 142190
>emb|CT485672.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1 (AM084345) Length = 31195 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aaggattagtattaggagct 105 |||||||||||||||||||| Sbjct: 13529 aaggattagtattaggagct 13548
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 attacatgtacagttttataatta 168 |||||||||| ||||||||||||| Sbjct: 29241 attacatgtatagttttataatta 29264
>gb|AC159261.4| Mus musculus BAC clone RP24-80C13 from chromosome 13, complete sequence Length = 230437 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 ggagctttctaaaatacaacagcg 123 |||||||||||||||||| ||||| Sbjct: 57080 ggagctttctaaaatacatcagcg 57057
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 attacatgtacagttttataatta 168 |||||||||| ||||||||||||| Sbjct: 50108 attacatgtatagttttataatta 50085
>emb|AL645963.9| Mouse DNA sequence from clone RP23-76C16 on chromosome 11, complete sequence Length = 176154 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 agatttagtcggaggcccctgctg 384 |||||||||| ||||||||||||| Sbjct: 3009 agatttagtcagaggcccctgctg 3032
>emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chromosome 2, complete sequence Length = 193057 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 agcattctctggaaaccagc 304 |||||||||||||||||||| Sbjct: 1783 agcattctctggaaaccagc 1802
>emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chromosome 4, complete sequence Length = 218429 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aggagctttctaaaatacaa 118 |||||||||||||||||||| Sbjct: 39369 aggagctttctaaaatacaa 39388
>emb|AL663028.12| Mouse DNA sequence from clone RP23-23J11 on chromosome 2, complete sequence Length = 110275 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 agcattctctggaaaccagc 304 |||||||||||||||||||| Sbjct: 110058 agcattctctggaaaccagc 110077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,777,827 Number of Sequences: 3902068 Number of extensions: 4777827 Number of successful extensions: 88731 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88559 Number of HSP's gapped (non-prelim): 172 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
