ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y063_SYNY3 (Q55147) Hypothetical UPF0118 protein sll0063 30 2.3

>Y063_SYNY3 (Q55147) Hypothetical UPF0118 protein sll0063|
          Length = 395

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 219 LSPSPLHHEETLVAQLRYWASILKRVIVELDVKVYILGWSI 97
           L P  L   + LVA+L  W    ++ +V LD K  ILGW +
Sbjct: 107 LIPLALSQAQQLVARLPDWLDSGQKQLVLLDQKAEILGWPV 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,863,876
Number of Sequences: 219361
Number of extensions: 944989
Number of successful extensions: 2265
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2265
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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