Clone Name | rbastl03e04 |
---|---|
Clone Library Name | barley_pub |
>emb|AL357774.11| Human DNA sequence from clone RP11-473N15 on chromosome X Contains the 5' end of the PAK3 gene for p21 (CDKN1A)-activated kinase 3, complete sequence Length = 156498 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ggttaagaatgtatgacaaat 50 ||||||||||||||||||||| Sbjct: 65624 ggttaagaatgtatgacaaat 65644
>ref|XM_812246.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508543.40) partial mRNA Length = 537 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tcgtcctgcgacaccgcctc 251 |||||||||||||||||||| Sbjct: 182 tcgtcctgcgacaccgcctc 163
>ref|XM_816174.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506401.130) partial mRNA Length = 393 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tcgtcctgcgacaccgcctc 251 |||||||||||||||||||| Sbjct: 38 tcgtcctgcgacaccgcctc 19
>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32 Length = 198788 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ttaagaatgtatgacaaatt 51 |||||||||||||||||||| Sbjct: 36423 ttaagaatgtatgacaaatt 36442
>emb|AL050399.1|ATF25E4 Arabidopsis thaliana DNA chromosome 4, BAC clone F25E4 (ESSA project) Length = 80019 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ttaagaatgtatgacaaatt 51 |||||||||||||||||||| Sbjct: 57774 ttaagaatgtatgacaaatt 57793
>emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chromosome 11, complete sequence Length = 224603 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cacttttacatccagttcaa 137 |||||||||||||||||||| Sbjct: 212583 cacttttacatccagttcaa 212564
>gb|AY340408.1| Ophelina acuminata 28S ribosomal RNA gene, partial sequence Length = 331 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 gacggtgatagccgacgggc 228 |||||||||||||||||||| Sbjct: 221 gacggtgatagccgacgggc 202
>gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, complete sequence Length = 157871 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ttctcccccacccaatcatg 275 |||||||||||||||||||| Sbjct: 156712 ttctcccccacccaatcatg 156693
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tgacctggacctcttcttct 347 |||||||||||||||||||| Sbjct: 676439 tgacctggacctcttcttct 676458
>gb|AY612630.1| Ophelina acuminata 28S ribosomal RNA gene, partial sequence Length = 800 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 gacggtgatagccgacgggc 228 |||||||||||||||||||| Sbjct: 240 gacggtgatagccgacgggc 221
>emb|BX537104.9| Zebrafish DNA sequence from clone DKEY-80G18 in linkage group 15, complete sequence Length = 198108 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 35 agaatgtatgacaaattgtacgccaacg 62 |||||||| |||||||||||||| |||| Sbjct: 42628 agaatgtacgacaaattgtacgcaaacg 42601
>gb|AC104971.5| Homo sapiens chromosome 18, clone RP11-126O1, complete sequence Length = 164132 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ttctcccccacccaatcatg 275 |||||||||||||||||||| Sbjct: 1367 ttctcccccacccaatcatg 1348
>emb|BX004776.4| Zebrafish DNA sequence from clone CH211-137A8 in linkage group 15, complete sequence Length = 195462 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 agaatgtatgacaaattgtacgccaacg 62 |||||||| |||||||||||||| |||| Sbjct: 47356 agaatgtacgacaaattgtacgcaaacg 47383
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 acctggacctcttcttctac 349 |||||||||||||||||||| Sbjct: 417589 acctggacctcttcttctac 417570 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,195,239 Number of Sequences: 3902068 Number of extensions: 3195239 Number of successful extensions: 50385 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50355 Number of HSP's gapped (non-prelim): 30 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)