ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL357774.11| Human DNA sequence from clone RP11-473N15 on ch... 42 1.6
2ref|XM_812246.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.3
3ref|XM_816174.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.3
4emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, ... 40 6.3
5emb|AL050399.1|ATF25E4 Arabidopsis thaliana DNA chromosome 4, BA... 40 6.3
6emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chr... 40 6.3
7gb|AY340408.1| Ophelina acuminata 28S ribosomal RNA gene, partia... 40 6.3
8gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, co... 40 6.3
9dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 40 6.3
10gb|AY612630.1| Ophelina acuminata 28S ribosomal RNA gene, partia... 40 6.3
11emb|BX537104.9| Zebrafish DNA sequence from clone DKEY-80G18 in ... 40 6.3
12gb|AC104971.5| Homo sapiens chromosome 18, clone RP11-126O1, com... 40 6.3
13emb|BX004776.4| Zebrafish DNA sequence from clone CH211-137A8 in... 40 6.3
14gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 40 6.3

>emb|AL357774.11| Human DNA sequence from clone RP11-473N15 on chromosome X Contains the
             5' end of the PAK3 gene for p21 (CDKN1A)-activated kinase
             3, complete sequence
          Length = 156498

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    ggttaagaatgtatgacaaat 50
             |||||||||||||||||||||
Sbjct: 65624 ggttaagaatgtatgacaaat 65644



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>ref|XM_812246.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508543.40) partial mRNA
          Length = 537

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 232 tcgtcctgcgacaccgcctc 251
           ||||||||||||||||||||
Sbjct: 182 tcgtcctgcgacaccgcctc 163



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>ref|XM_816174.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506401.130) partial mRNA
          Length = 393

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 232 tcgtcctgcgacaccgcctc 251
           ||||||||||||||||||||
Sbjct: 38  tcgtcctgcgacaccgcctc 19



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>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32
          Length = 198788

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ttaagaatgtatgacaaatt 51
             ||||||||||||||||||||
Sbjct: 36423 ttaagaatgtatgacaaatt 36442



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>emb|AL050399.1|ATF25E4 Arabidopsis thaliana DNA chromosome 4, BAC clone F25E4 (ESSA project)
          Length = 80019

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ttaagaatgtatgacaaatt 51
             ||||||||||||||||||||
Sbjct: 57774 ttaagaatgtatgacaaatt 57793



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>emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chromosome 11, complete
              sequence
          Length = 224603

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    cacttttacatccagttcaa 137
              ||||||||||||||||||||
Sbjct: 212583 cacttttacatccagttcaa 212564



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>gb|AY340408.1| Ophelina acuminata 28S ribosomal RNA gene, partial sequence
          Length = 331

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 gacggtgatagccgacgggc 228
           ||||||||||||||||||||
Sbjct: 221 gacggtgatagccgacgggc 202



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>gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, complete sequence
          Length = 157871

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttctcccccacccaatcatg 275
              ||||||||||||||||||||
Sbjct: 156712 ttctcccccacccaatcatg 156693



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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    tgacctggacctcttcttct 347
              ||||||||||||||||||||
Sbjct: 676439 tgacctggacctcttcttct 676458



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>gb|AY612630.1| Ophelina acuminata 28S ribosomal RNA gene, partial sequence
          Length = 800

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 209 gacggtgatagccgacgggc 228
           ||||||||||||||||||||
Sbjct: 240 gacggtgatagccgacgggc 221



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>emb|BX537104.9| Zebrafish DNA sequence from clone DKEY-80G18 in linkage group 15,
             complete sequence
          Length = 198108

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 35    agaatgtatgacaaattgtacgccaacg 62
             |||||||| |||||||||||||| ||||
Sbjct: 42628 agaatgtacgacaaattgtacgcaaacg 42601



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>gb|AC104971.5| Homo sapiens chromosome 18, clone RP11-126O1, complete sequence
          Length = 164132

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  ttctcccccacccaatcatg 275
            ||||||||||||||||||||
Sbjct: 1367 ttctcccccacccaatcatg 1348



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>emb|BX004776.4| Zebrafish DNA sequence from clone CH211-137A8 in linkage group 15,
             complete sequence
          Length = 195462

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 35    agaatgtatgacaaattgtacgccaacg 62
             |||||||| |||||||||||||| ||||
Sbjct: 47356 agaatgtacgacaaattgtacgcaaacg 47383



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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    acctggacctcttcttctac 349
              ||||||||||||||||||||
Sbjct: 417589 acctggacctcttcttctac 417570


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,195,239
Number of Sequences: 3902068
Number of extensions: 3195239
Number of successful extensions: 50385
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50355
Number of HSP's gapped (non-prelim): 30
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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