ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5) 31 1.6
2CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1) 31 1.6
3CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1) 31 1.6
4MSHM_SARGL (O63852) Mitochondrial MutS protein homolog 30 2.7
5Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22) 30 3.5
6CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1) 29 5.9
7GATA7_ARATH (Q9SKN6) Putative GATA transcription factor 7 28 7.7

>DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5)|
          Length = 915

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
 Frame = +3

Query: 153 PYSPLH---SIPGPASTT---SWSLLNNSW---RYRAEHQS*SEITMLEMANGLLNPPAT 305
           PYSP H    +P  A+TT   S SL +++W     + E  S   ++ L +A G  +P   
Sbjct: 70  PYSPRHESWGLPSNANTTLLGSSSLTSSNWFPFTDQKETSSNEILSSLNLAAGSSSPALP 129

Query: 306 STPTR 320
           STP+R
Sbjct: 130 STPSR 134



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>CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1)|
          Length = 258

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 135 AK*SSAPYSPLHSIPGPASTTSWSLLNNSWRYRAEH 242
           AK  SAPY     +PG       SLLNN W   A H
Sbjct: 39  AKNGSAPYQVSLQVPGWGHNCGGSLLNNRWVLTAAH 74



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>CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1)|
          Length = 259

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 135 AK*SSAPYSPLHSIPGPASTTSWSLLNNSWRYRAEH 242
           AK  SAPY     +PG       SLLNN W   A H
Sbjct: 39  AKNGSAPYQVSLQVPGWGHNCGGSLLNNRWVLTAAH 74



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>MSHM_SARGL (O63852) Mitochondrial MutS protein homolog|
          Length = 982

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 3   EQATSTMFMLTEGTIKNKYFQKEGYNIFSSSRKMT 107
           EQ ++ +F  T  +IK +YF KEGY    SS+K+T
Sbjct: 518 EQISNIVFQDTT-SIKAEYFNKEGYAFSISSKKLT 551



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>Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22)|
          Length = 220

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +1

Query: 61  FKRKDTTSSLLQER*HTAHAY----PQ-HQQNNLLHLTPPYTPFQDQPRLPAGRF*TIHG 225
           F RK+T S  +  R H    Y    PQ HQ    LHLT P  P+    R PA       G
Sbjct: 94  FHRKETES--IGGRAHRVPTYYNRPPQPHQPPGYLHLTSPAAPY----RPPAA-----SG 142

Query: 226 DTEQSTNPN 252
           D E ++NP+
Sbjct: 143 DEEDTSNPS 151



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>CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1)|
          Length = 505

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 37  KARLKTSIFKRKDTTSSLLQER*HTAHAYPQHQQ 138
           +A +KT +F   DTTSS +    +    YP+HQQ
Sbjct: 305 QAEVKTFMFAGHDTTSSAISWILYCLAKYPEHQQ 338



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>GATA7_ARATH (Q9SKN6) Putative GATA transcription factor 7|
          Length = 315

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 146 FCTLLPPTLHSRTSLDYQLVAFEQFMEIQSRAPILI 253
           F  L+PP L    SL Y+     Q +++Q   PIL+
Sbjct: 48  FQKLVPPPLDELMSLSYEFTCNGQRVQVQKHVPILL 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,162,022
Number of Sequences: 219361
Number of extensions: 1471169
Number of successful extensions: 3345
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3345
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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