ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03e02 |
|---|---|
| Clone Library Name | barley_pub |
>OPSD_CATBO (Q17296) Rhodopsin| Length = 378 Score = 30.8 bits (68), Expect = 0.84 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = -2 Query: 149 WVAGPHICKIFGQTG---GCGNPFT 84 WV GP +C+++G TG GCG+ +T Sbjct: 120 WVLGPLVCELYGLTGSLFGCGSIWT 144
>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1093 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 127 AKYLGRREAAATPSPLCSSATKKKKEIQPASQQVSESVP 11 AK+ ++ AA P SA K+KKE PA +S P Sbjct: 84 AKFAAKQAAAKAKQPAAQSAPKEKKEKTPALPPYEDSTP 122
>PDLI2_MOUSE (Q8R1G6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)| Length = 349 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Frame = +3 Query: 288 STCFNPIISSPR-CSPDRTPP 347 S CF+P+ SPR CSP TPP Sbjct: 120 SACFSPVSLSPRPCSPFSTPP 140
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -3 Query: 109 REAAATPSPLCSSATKKKKEIQPASQQVSESVP 11 REAA P S++T++ Q A+QQ SES P Sbjct: 3359 REAANAPEEQASTSTEQTPAQQEATQQPSESTP 3391
>Y1791_AQUAE (O67660) Hypothetical protein aq_1791| Length = 127 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -1 Query: 147 GSWASYMQNIWADGRLRQPLHLCAVRPRRRRKKYSQ 40 GS+ S M+N+ DGR ++ LC P R R+++ + Sbjct: 16 GSFQSVMENLVKDGRGKEIQILCMHAPPRERRRFKR 51
>T2R55_PONPY (Q645U9) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 15 TDSLTCWLAGCISFFFFVAELH 80 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PAPHA (Q646G3) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 15 TDSLTCWLAGCISFFFFVAELH 80 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PANTR (Q646B8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 15 TDSLTCWLAGCISFFFFVAELH 80 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PANPA (Q5Y4Z2) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 15 TDSLTCWLAGCISFFFFVAELH 80 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_HUMAN (Q7RTR8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 15 TDSLTCWLAGCISFFFFVAELH 80 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -1 Query: 372 LAKTDGPLLEECGLDC 325 L K GPLL++CG+DC Sbjct: 1034 LPKQTGPLLKQCGVDC 1049
>T2R55_GORGO (Q645Z3) Taste receptor type 2 member 55 (T2R55)| Length = 299 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 15 TDSLTCWLAGCISFFFFVAELH 80 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSVFYFFKIAH 113
>OPSO_LIMPO (P35361) Ocellar opsin| Length = 376 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -2 Query: 161 FVPWWVAGPHICKIFGQTG---GCGNPFTSV 78 F W+ GP +C+++G G GC + ++ V Sbjct: 109 FAETWILGPFMCEVYGMAGSLFGCASIWSMV 139
>OPSL_LIMPO (P35360) Lateral eye opsin| Length = 376 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -2 Query: 161 FVPWWVAGPHICKIFGQTG---GCGNPFTSV 78 F W+ GP +C+++G G GC + ++ V Sbjct: 109 FAETWILGPFMCEVYGMAGSLFGCASIWSMV 139
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -1 Query: 360 DGPLLEECGLDC 325 DGP+LE CGLDC Sbjct: 1075 DGPVLEICGLDC 1086
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = +1 Query: 52 LSSSSWPNCTEVKGLPQPPVCPNILHI*GPATHHGTKPIT*HL 180 LS+ S T + PQP P L P T T P T H+ Sbjct: 1388 LSTVSPTTSTPISSTPQPTSSPTTLPTTSPLTSSATSPTTSHI 1430
>HIR2_YEAST (P32480) Histone transcription regulator 2| Length = 875 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 118 LGRREAAATPSPLCSSATKKKKEIQP 41 L R+ ATPS + + K+KKE+QP Sbjct: 452 LKRKPKEATPSNIAPGSKKQKKELQP 477
>OPS6_DROME (O01668) Opsin Rh6 (Rhodopsin Rh6, long-wavelength)| Length = 369 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Frame = -2 Query: 164 GFVPWWVAGPHICKIFGQTG---GC 99 GF W+ GP +C+++G G GC Sbjct: 108 GFYGTWIMGPFLCELYGMFGSLFGC 132
>DUSC_VIBPA (Q87N01) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 322 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +3 Query: 72 ELHRGEGVAAASRLPKYFAYMRPSYPPWNK 161 E+ +G+ +R+ ++FAY+R SYP N+ Sbjct: 260 EMKGDKGLYYPNRVKQWFAYLRQSYPEANE 289
>ADA24_MOUSE (Q9R160) ADAM 24 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 24) (Testase 1) Length = 761 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Frame = +1 Query: 28 LAGWLAVFLSSSSWPN--CTEVKGLPQ 102 L WL + L SS WP C E KG P+ Sbjct: 16 LQAWLRMLLFSSVWPPTWCAEYKGPPE 42
>Y118_CHLMU (P58106) Hypothetical RNA methyltransferase TC0118 (EC 2.1.1.-)| Length = 397 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 134 HICKIFGQTGGCGNPFTSVQFGHEEEE 54 H CK FG GGC +P T + + +E Sbjct: 6 HNCKHFGICGGCSSPQTEYELSLKAKE 32
>PSBC_CHLVU (P56308) Photosystem II 44 kDa reaction center protein (P6 protein)| (CP43) Length = 473 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = +3 Query: 33 WLAG---CISFFFFVAEL-HRGEGVAAASRLPK 119 WLA C+ FFFFV L H G AAA+ K Sbjct: 425 WLATSHFCLGFFFFVGHLWHAGRARAAAAGFEK 457
>OPSD_SPHSP (P35362) Rhodopsin (Opsin)| Length = 376 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Frame = -2 Query: 149 WVAGPHICKIFGQTG---GCGNPFTSV 78 WV GP +C+++ G GCG+ +T V Sbjct: 118 WVLGPFMCELYALLGSLFGCGSIWTMV 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,944,162 Number of Sequences: 219361 Number of extensions: 889490 Number of successful extensions: 2583 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2582 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
