>CCNL1_BRARE (Q7ZVX0) Cyclin-L1|
          Length = 498

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 411 SRDRSQSRP-ARSRDH--GRNDRGSSDYHEDHHDRKRMRA 301
           SR RS SR   R RDH   + +R  S +H DH DR+R R+
Sbjct: 436 SRSRSNSRERVRDRDHIKHKQERSGSGHHWDHRDRERDRS 475



 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKR 310
           + RDR + R   SRDHGRN R S  +    H R R
Sbjct: 466 DHRDRERDR---SRDHGRNKRQSRSHSGHSHSRHR 497

>PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)|
           (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G)
           (Cyclophilin G) (Matrin cyclophilin) (Matrin-cyp)
          Length = 752

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 295
           SR R +SR  RSR H R+   S +YH       R R  S
Sbjct: 565 SRSRDRSRRVRSRSHDRDRSRSKEYHRYREQEYRRRGRS 603

>PPIG_HUMAN (Q13427) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)|
           (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G)
           (Cyclophilin G) (Clk-associating RS-cyclophilin)
           (CARS-cyclophilin) (CARS-Cyp) (SR-cyclophilin) (SRcyp)
           (SR-cyp) (CASP10)
          Length = 754

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 295
           SR R +SR  RSR H R+   S +YH       R R  S
Sbjct: 566 SRSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRS 604

>CS029_MOUSE (Q9CS00) Protein C19orf29 homolog|
          Length = 772

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKR 310
           SR RS+SR +RSR HGR+ R   + HE   +RKR
Sbjct: 42  SRSRSRSR-SRSRSHGRSSRRRRE-HERRRERKR 73

>EGGS_SCHMA (P08016) Putative eggshell protein (Fragment)|
          Length = 149

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 375 RDHGRNDRGSSDYHEDHHDRK 313
           +DH ++D    D+H+DHHD +
Sbjct: 107 KDHDKHDHDEHDHHDDHHDHR 127

>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRK 313
           + RDR +    R RD GR DR   D   D  DR+
Sbjct: 187 DRRDRDRRDRDRDRDRGRGDRRGDDRQRDRRDRR 220

>YP68_CAEEL (Q09217) Hypothetical protein B0495.8|
          Length = 313

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRK 313
           +RDRS+SR    R + R+DRG   Y  D+ DR+
Sbjct: 278 NRDRSRSR---DRSYRRDDRGDRRYDRDNRDRR 307

>HXA2_MOUSE (P31245) Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11)|
          Length = 372

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 53  CKRNCPPLSETYIITG-KTSLISNAATSPPSLFRTLYPSMATGDHRPH 193
           C  + PP+++T+  +  KTS +S++   PP   +T+ PS+  G H  H
Sbjct: 21  CLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTI-PSLNPGSHPRH 67

>HXA2_HUMAN (O43364) Homeobox protein Hox-A2|
          Length = 376

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 53  CKRNCPPLSETYIITG-KTSLISNAATSPPSLFRTLYPSMATGDHRPH 193
           C  + PP+++T+  +  KTS +S++   PP   +T+ PS+  G H  H
Sbjct: 21  CLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTI-PSLNPGSHPRH 67

>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
           (ATP-dependent RNA helicase #46)
          Length = 795

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDHGR-NDRGSSDYHEDHHDRKRMRASS 295
           + RDR + R  RS+D  R  DRG  +   +    K +RAS+
Sbjct: 25  KDRDRDRDREDRSKDRDRERDRGDREREREKEKEKELRAST 65

>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASSTVDG 283
           SRDR +SR   SR  GR  R SS  ++      R R+    DG
Sbjct: 87  SRDRRRSR---SRSRGRRSRSSSPGNKSKKTENRSRSKEKTDG 126

>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (PRP5 homolog)
          Length = 1032

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASSTVDG 283
           SRDR +SR   SR  GR  R SS  ++      R R+    DG
Sbjct: 87  SRDRRRSR---SRSRGRRSRSSSPGNKSKKTENRSRSKEKTDG 126

>MYOE_DICDI (Q03479) Myosin IE heavy chain|
          Length = 1003

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  LIYYNLRYNKWFKILQEELSSAFRDI 87
           L Y + RYNKWF+    EL  AF+D+
Sbjct: 725 LFYRSYRYNKWFR----ELHRAFKDV 746

>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMR 304
           SR+R + RP R R+  R+ R   D   +   R+R R
Sbjct: 175 SRERERRRPRRKREDSRDRRNRRDMEREGERRRRRR 210

>HXA2_RAT (P31246) Homeobox protein Hox-A2 (Hox-1.11)|
          Length = 372

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 53  CKRNCPPLSETYIITG-KTSLISNAATSPPSLFRTLYPSMATGDH 184
           C  + PP+++T+  +  KTS +S++   PP   +T+ PS+  G H
Sbjct: 21  CLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTI-PSLNPGSH 64

>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 551

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDH-GRNDRGSSDYHEDHHDRKRMRASSTV 289
           ++RDRS  R  R  D   +  R  S+ H+ H D +R   S  V
Sbjct: 422 DTRDRSNKRSRRHHDDVPQQSRSRSERHDSHRDHERHHLSRHV 464

>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 239

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRA 301
           SR RS+ R +RSRD GR   G         +R R R+
Sbjct: 194 SRSRSRERRSRSRDRGRGGGGGGGGGGGGRERDRRRS 230

>YOD2_CAEEL (P34594) Hypothetical protein ZC262.2|
          Length = 233

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDHGRND-----RGSSDYHEDHHDRKRMR 304
           ESR        R RD+GRND     RG   +  D +DR   R
Sbjct: 60  ESRRHDDRDQERRRDYGRNDRRDDRRGDGSWKTDRNDRNDRR 101

>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 488

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -3

Query: 411 SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMR 304
           SRDR      RSR   R DR  S   E   DR R R
Sbjct: 63  SRDRGDRDRKRSRSRDRRDRDRSRSRERRRDRSRDR 98



 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRA 301
           +  DR + + +RSRD G  DR  S    D  DR R R+
Sbjct: 51  DDEDRKKRKRSRSRDRGDRDRKRS-RSRDRRDRDRSRS 87

>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
          Length = 795

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDHGR-NDRGSSDYHEDHHDRKRMRASS 295
           + R+R + R  RS+D  R  DRG  +   +    K +RAS+
Sbjct: 25  KDRERDRDREDRSKDRDRERDRGDREREREKEKEKELRAST 65

>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDHGRNDRGSSDYHED-HHDRKRMR 304
           + R+RS+ RP   + H   D+G  D   D   DR R R
Sbjct: 285 QPRERSRDRPREDKHHRDRDQGGRDRDRDSRRDRDRTR 322

>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1045

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 408 RDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRA 301
           R R +SR + SR   R+     + H  HH +KRM++
Sbjct: 592 RKRGRSRSSDSRSQSRSGHDQKN-HRKHHGKKRMKS 626

>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
            discs protein homolog)
          Length = 2792

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
 Frame = -3

Query: 414  ESRDRSQSRPARSRDHGRNDRGSSDY-----------HEDHHDRK 313
            + R  SQS+P R RD  ++D  S+D             EDHHD +
Sbjct: 1538 QQRRISQSQPVRGRDEEQDDIVSADVEEVEVVEGVAGEEDHHDEQ 1582

>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase|
           1) (Cyclophilin) (BmCYP-1)
          Length = 843

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 405 DRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 295
           +RS+SR  RSR +GR  R SS        R + R+ S
Sbjct: 699 ERSRSRRRRSRSNGRRRRSSSRRSRSRDRRHKSRSRS 735

>CWC25_EMENI (Q5B0I1) Pre-mRNA-splicing factor cwc25|
          Length = 415

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 414 ESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 295
           + R+R Q R  R R H       +D H  H  R+R R+ S
Sbjct: 168 QGRERHQERE-RERGHRHRRDSGNDSHRSHRHRRRSRSRS 206

>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
            discs protein homolog) (hHYD) (Progestin-induced protein)
          Length = 2799

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
 Frame = -3

Query: 414  ESRDRSQSRPARSRDHGRNDRGSSDY-----------HEDHHDRK 313
            + R  SQS+P R RD  ++D  S+D             EDHHD +
Sbjct: 1544 QQRRISQSQPVRGRDEEQDDIVSADVEEVEVVEGVAGEEDHHDEQ 1588


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,970,565
Number of Sequences: 219361
Number of extensions: 895250
Number of successful extensions: 2633
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2629
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)