>ref|XM_469113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2094

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 295  agaagacgcgcgcattctcttcctgtcgtggtgatcctcg 334
            ||||||||||||||||||||| |||  | |||||||||||
Sbjct: 1893 agaagacgcgcgcattctcttgctgctgcggtgatcctcg 1854

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 295      agaagacgcgcgcattctcttcctgtcgtggtgatcctcg 334
                ||||||||||||||||||||| |||  | |||||||||||
Sbjct: 25519366 agaagacgcgcgcattctcttgctgctgcggtgatcctcg 25519405



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     ccccacttcctcttgaaatt 207
               ||||||||||||||||||||
Sbjct: 6502584 ccccacttcctcttgaaatt 6502603

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 295      agaagacgcgcgcattctcttcctgtcgtggtgatcctcg 334
                ||||||||||||||||||||| |||  | |||||||||||
Sbjct: 25610675 agaagacgcgcgcattctcttgctgctgcggtgatcctcg 25610714



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     ccccacttcctcttgaaatt 207
               ||||||||||||||||||||
Sbjct: 6501797 ccccacttcctcttgaaatt 6501816

>gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genomic sequence, complete
             sequence
          Length = 117046

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 295   agaagacgcgcgcattctcttcctgtcgtggtgatcctcg 334
             ||||||||||||||||||||| |||  | |||||||||||
Sbjct: 15486 agaagacgcgcgcattctcttgctgctgcggtgatcctcg 15447

>dbj|AK111930.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A06, full
           insert sequence
          Length = 1413

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 295 agaagacgcgcgcattctcttcctgtcgtggtgatcctcg 334
           ||||||||||||||||||||| |||  | |||||||||||
Sbjct: 920 agaagacgcgcgcattctcttgctgctgcggtgatcctcg 881

>dbj|AK111718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021J03, full
            insert sequence
          Length = 2874

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 295  agaagacgcgcgcattctcttcctgtcgtggtgatcctcg 334
            ||||||||||||||||||||| |||  | |||||||||||
Sbjct: 2397 agaagacgcgcgcattctcttgctgctgcggtgatcctcg 2358

>gb|AC131717.3| Mus musculus chromosome 12 clone RP23-167A18, complete sequence
          Length = 190372

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 202    gaaattctgctcatcgtcgctt 223
              ||||||||||||||||||||||
Sbjct: 149023 gaaattctgctcatcgtcgctt 149044

>gb|AC126277.3| Mus musculus BAC clone RP23-161L22 from 12, complete sequence
          Length = 191231

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 202  gaaattctgctcatcgtcgctt 223
            ||||||||||||||||||||||
Sbjct: 4771 gaaattctgctcatcgtcgctt 4792

>gb|AC123752.8| Mus musculus chromosome 1, clone RP24-194N4, complete sequence
          Length = 223110

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 310    tctcttcctgtcgtggtgatc 330
              |||||||||||||||||||||
Sbjct: 118187 tctcttcctgtcgtggtgatc 118167

>ref|NM_009283.2| Mus musculus signal transducer and activator of transcription 1
            (Stat1), mRNA
          Length = 4248

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1686 tctcttcctgtcgtggtgatc 1706

>gb|AF349678.1| Mus musculus signal transducer and activator of transcription 1
            (Stat1) gene, partial cds
          Length = 17321

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 4134 tctcttcctgtcgtggtgatc 4154

>gb|BC004808.1| Mus musculus signal transducer and activator of transcription 1, mRNA
            (cDNA clone MGC:6411 IMAGE:3587831), complete cds
          Length = 2643

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1640 tctcttcctgtcgtggtgatc 1660

>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence
          Length = 156107

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    taaaattctgcaagaggaatt 65
             |||||||||||||||||||||
Sbjct: 96395 taaaattctgcaagaggaatt 96375

>dbj|AK157263.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830208J20 product:signal transducer and
            activator of transcription 1, full insert sequence
          Length = 2530

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1553 tctcttcctgtcgtggtgatc 1573

>dbj|AK159887.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420036J05 product:signal transducer and
            activator of transcription 1, full insert sequence
          Length = 4211

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1688 tctcttcctgtcgtggtgatc 1708

>dbj|AK046517.1| Mus musculus adult male adrenal gland cDNA, RIKEN full-length
            enriched library, clone:B330003H23 product:signal
            transducer and activator of transcription 1, full insert
            sequence
          Length = 4000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1671 tctcttcctgtcgtggtgatc 1691

>dbj|AK084855.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430002O20 product:signal transducer and
            activator of transcription 1, full insert sequence
          Length = 4244

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1638 tctcttcctgtcgtggtgatc 1658

>dbj|AK039458.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330045H06 product:signal transducer and
            activator of transcription 1, full insert sequence
          Length = 2699

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1705 tctcttcctgtcgtggtgatc 1725

>dbj|AK018544.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
            library, clone:9030611B09 product:signal transducer and
            activator of transcription 1, full insert sequence
          Length = 2634

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1655 tctcttcctgtcgtggtgatc 1675

>dbj|AK082706.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230091J07 product:signal
            transducer and activator of transcription 1, full insert
            sequence
          Length = 4248

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1686 tctcttcctgtcgtggtgatc 1706

>gb|AC137672.2| Homo sapiens chromosome 3 clone RP11-72I12, complete sequence
          Length = 150313

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 45     taaaattctgcaagaggaatt 65
              |||||||||||||||||||||
Sbjct: 150292 taaaattctgcaagaggaatt 150312

>dbj|D63377.1|PSECUME1 Pseudomonas fluorescens 2-hydroxypenta-2,4-dienoate hydratase (cumE),
            acetaldehyde dehydrogenase (cumG),
            4-hydroxy-2-oxovalerate aldolase (cumF) genes, complete
            cds
          Length = 3111

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 381  tcgccggccttgactgggacc 401
            |||||||||||||||||||||
Sbjct: 1017 tcgccggccttgactgggacc 997

>gb|U06924.1|MMU06924 Mus musculus signal transducer and activator of transcription (Stat1)
            mRNA, complete cds
          Length = 2277

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  tctcttcctgtcgtggtgatc 330
            |||||||||||||||||||||
Sbjct: 1358 tctcttcctgtcgtggtgatc 1378

>gb|AY307915.1| Stappia sp. M4 carbon monoxide dehydrogenase form I large subunit
           (coxL) gene, partial cds
          Length = 1223

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 atcgtcgcttccatcgtcac 233
           ||||||||||||||||||||
Sbjct: 25  atcgtcgcttccatcgtcac 44

>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0081P02, complete sequence
          Length = 162425

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ccccacttcctcttgaaatt 207
             ||||||||||||||||||||
Sbjct: 45346 ccccacttcctcttgaaatt 45365

>emb|AL132671.20|HSDJ92C8 Human DNA sequence from clone RP1-92C8 on chromosome 6 Contains a novel
             gene, a RAP1A pseudogene, the 5' end of the ROS1 gene for
             v-ros UR2 sarcoma virus oncogene homolog 1 (avian), the 5'
             end of the DCBLD1 gene for discoidin CUB and LCCL domain
             containing 1 and two CpG islands, complete sequence
          Length = 131060

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   catcgtccccacttcctctt 201
             ||||||||||||||||||||
Sbjct: 18088 catcgtccccacttcctctt 18069

>gb|AC158572.3| Mus musculus chromosome 7, clone RP24-402J3, complete sequence
          Length = 171722

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    gcctgaggctcctagaactg 253
              ||||||||||||||||||||
Sbjct: 133228 gcctgaggctcctagaactg 133247

>emb|AL161515.2|ATCHRIV27 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 27
          Length = 197394

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     taacaaatggtttaaaattc 52
              ||||||||||||||||||||
Sbjct: 180289 taacaaatggtttaaaattc 180270

>emb|AL049482.1|ATF17A8 Arabidopsis thaliana DNA chromosome 4, BAC clone  F17A8 (ESSA project)
          Length = 128071

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    taacaaatggtttaaaattc 52
             ||||||||||||||||||||
Sbjct: 60988 taacaaatggtttaaaattc 60969

>gb|AC021127.9| Homo sapiens BAC clone RP11-377G16 from 4, complete sequence
          Length = 194158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    tggtaaaacaagtctcatca 116
             ||||||||||||||||||||
Sbjct: 35692 tggtaaaacaagtctcatca 35711

>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and
              S-adenosylhomocysteine hydrolase, complete cds
          Length = 127234

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    tggctgctatctgtatcacc 285
              ||||||||||||||||||||
Sbjct: 100264 tggctgctatctgtatcacc 100283

>dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24
          Length = 88989

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    taacaaatggtttaaaattc 52
             ||||||||||||||||||||
Sbjct: 81326 taacaaatggtttaaaattc 81307

>emb|AL929113.9| Mouse DNA sequence from clone RP23-424D23 on chromosome 2, complete
            sequence
          Length = 161187

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    ctctcatatattacaatctc 27
            ||||||||||||||||||||
Sbjct: 9348 ctctcatatattacaatctc 9367

>emb|AL355099.5|CNS05TCI Human chromosome 14 DNA sequence BAC R-1A16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155827

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     aacaaatggtttaaaattct 53
              ||||||||||||||||||||
Sbjct: 139930 aacaaatggtttaaaattct 139949


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,290,442
Number of Sequences: 3902068
Number of extensions: 3290442
Number of successful extensions: 63039
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62915
Number of HSP's gapped (non-prelim): 124
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)