ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03d12 |
|---|---|
| Clone Library Name | barley_pub |
>GCSP_PELUB (Q4FMV1) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 952 Score = 32.0 bits (71), Expect = 0.65 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +2 Query: 203 TSLTIYNPSAAS-RLEESFGTEQSLFCFAGSSVSAAGTFSQFPSKADGLGLSPCFGSAES 379 TS T Y P A RLE +Q + F G ++ A + + A+ +GLS +ES Sbjct: 105 TSYTPYQPEVAQGRLEMLLNFQQMIIDFTGMDIANASLLDEGTAAAEAMGLSYRISKSES 164 Query: 380 R 382 + Sbjct: 165 K 165
>NUP42_YEAST (P49686) Nucleoporin NUP42 (Nuclear pore protein NUP42)| Length = 430 Score = 31.2 bits (69), Expect = 1.1 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Frame = +2 Query: 170 LQAKVEERNQNTSLTIYNPS--AASRLEESFGTEQSLFCFAGSSVSAAGTF-------SQ 322 LQ + +TS P+ AA+ + FGT Q+ +G+ VS GTF S Sbjct: 187 LQQNASQNASSTSSAFGKPTFGAATNTQSPFGTIQNTSTSSGTGVSPFGTFGTNSNNKSP 246 Query: 323 FPSKADGLGL-SPCFGSAESRA 385 F + G G S FG+ S+A Sbjct: 247 FSNLQSGAGAGSSPFGTTTSKA 268
>RT15_HUMAN (P82914) 28S ribosomal protein S15, mitochondrial precursor (S15mt)| (MRP-S15) Length = 257 Score = 30.8 bits (68), Expect = 1.5 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -2 Query: 390 YIALDSADPKQGDNPSPSALLGNWENVPAAE-TDDPAKQ 277 Y+ A + D+P PS LL +++NVP E DD K+ Sbjct: 53 YVVRKPAQSRLDDDPPPSTLLKDYQNVPGIEKVDDVVKR 91
>ICP34_HHV11 (P36313) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 248 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -2 Query: 405 AVKGSYIALDSADPKQGDNPSPSALLGNWENVPAAETDDPAKQNSDCSVPKDSS 244 AV+ + A P G PS S LL W +VP + +DD + S P +S+ Sbjct: 38 AVRSAPAAAPPPPPAGGPPPSCSLLLRQWLHVPESASDDDDDDDWPDSPPPESA 91
>SYL_SYNY3 (P73274) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 869 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 357 GDNPSPSALLGNWENVPAAETDDPAKQNSD 268 G PSP A L +W NVP PA++ +D Sbjct: 466 GRGPSPLAKLEDWINVPCPSCGKPARRETD 495
>Y274_CHLMU (Q9PL34) Hypothetical protein TC0274| Length = 193 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +3 Query: 237 LALRSPLEPSSHCFALQDHLFRLQEHSPSSLVKQTDLGCRLASGRQSP 380 +++ L + CF + HLF EH PSS +K + +L+ +P Sbjct: 122 ISIGMALATTETCFQIYTHLFPALEHKPSSPLKIENTTTKLSRSSSAP 169
>Y006_CHLTR (O84009) Hypothetical protein CT_006| Length = 189 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +3 Query: 273 CFALQDHLFRLQEHSPSSLVKQTDLGCRLASGRQSPGQCNFP 398 CF + HLF EH PSS +K +L +P N+P Sbjct: 134 CFQIYTHLFPALEHKPSSSLKIEIAAAKLPRSSSAP-DLNYP 174
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = +2 Query: 251 SFGTEQ--SLFCFAGSSVSAAGTFSQFPSKADGLGLSPCFGS 370 SFG ++ F G SV++ G P+K G G +P FGS Sbjct: 1937 SFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGS 1978
>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 263 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 405 AVKGSYIALDSADPKQGDNPSPSALLGNWENVPAAETDD 289 AV+ + A P G PS S LL W +VP + +DD Sbjct: 38 AVRSAPAAAPPPPPASGPPPSCSLLLRQWLHVPESASDD 76
>PPARB_MOUSE (P35396) Peroxisome proliferator-activated receptor delta| (PPAR-delta) (PPAR-beta) (Nuclear hormone receptor 1) (NUC1) Length = 440 Score = 29.3 bits (64), Expect = 4.2 Identities = 18/43 (41%), Positives = 21/43 (48%) Frame = +3 Query: 261 PSSHCFALQDHLFRLQEHSPSSLVKQTDLGCRLASGRQSPGQC 389 PSS C L Q SPSSL+ Q +GC ASG +C Sbjct: 37 PSSSCADLS------QNSSPSSLLDQLQMGCDGASGGSLNMEC 73
>SYL_SYNEL (Q8DH61) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 857 Score = 29.3 bits (64), Expect = 4.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 357 GDNPSPSALLGNWENVPAAETDDPAKQNSD 268 G PSP A L W +VP + PA++ +D Sbjct: 465 GRGPSPLAKLAAWRDVPCPKCGGPAQRETD 494
>LDHD_STRA5 (Q8E0N5) D-lactate dehydrogenase (EC 1.1.1.28) (D-LDH) (D-specific| D-2-hydroxyacid dehydrogenase) Length = 330 Score = 28.9 bits (63), Expect = 5.5 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 410 RAQSREVTLPWTLPTRSKATTQVRLLY*GTGRMFL 306 RA RE WTLP R + + + GTGR+ L Sbjct: 124 RANVREQNFSWTLPIRGRVLGNMTVAIIGTGRIGL 158
>LDHD_STRA3 (Q8E6A9) D-lactate dehydrogenase (EC 1.1.1.28) (D-LDH) (D-specific| D-2-hydroxyacid dehydrogenase) Length = 330 Score = 28.9 bits (63), Expect = 5.5 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 410 RAQSREVTLPWTLPTRSKATTQVRLLY*GTGRMFL 306 RA RE WTLP R + + + GTGR+ L Sbjct: 124 RANVREQNFSWTLPIRGRVLGNMTVAIIGTGRIGL 158
>RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)| Length = 248 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 405 AVKGSYIALDSADPKQGDNPSPSALLGNWENVPAAETDD 289 AV+ + A P G PS S LL W +VP + +DD Sbjct: 38 AVRSAPAAAPPPPPAGGPPPSCSLLLRQWLHVPESASDD 76
>COAT_BPHK7 (P49861) Major capsid protein precursor (Gp5) (Head protein)| Length = 385 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 282 LQDHLFRLQEHSPSSLVKQTDLGCRLASGRQSPGQ 386 LQ L ++QE S + DL +LASG ++PG+ Sbjct: 39 LQSDLMKVQEELTKSGTRLFDLEQKLASGAENPGE 73
>DEOB_YERPE (Q8ZIQ3) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 40 RLQKPTYYGQLHQSLTIIMDTLNGNGFKTSMDIDFAS 150 R P Y G H S T+I+D L KT I + S Sbjct: 135 RANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTS 171
>DEOB_SHIFL (P0A6K9) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 40 RLQKPTYYGQLHQSLTIIMDTLNGNGFKTSMDIDFAS 150 R P Y G H S T+I+D L KT I + S Sbjct: 135 RANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTS 171
>DEOB_SALTY (P63923) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 40 RLQKPTYYGQLHQSLTIIMDTLNGNGFKTSMDIDFAS 150 R P Y G H S T+I+D L KT I + S Sbjct: 135 RANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTS 171
>DEOB_SALTI (P63924) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 40 RLQKPTYYGQLHQSLTIIMDTLNGNGFKTSMDIDFAS 150 R P Y G H S T+I+D L KT I + S Sbjct: 135 RANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTS 171
>DEOB_PHOLL (Q7N931) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 40 RLQKPTYYGQLHQSLTIIMDTLNGNGFKTSMDIDFAS 150 R P Y G H S T+I+D L KT I + S Sbjct: 135 RANLPGYLGNCHSSGTVILDKLGEEHMKTGKPIFYTS 171
>DEOB_ECOLI (P0A6K6) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 40 RLQKPTYYGQLHQSLTIIMDTLNGNGFKTSMDIDFAS 150 R P Y G H S T+I+D L KT I + S Sbjct: 135 RANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTS 171
>DEOB_ECOL6 (P0A6K7) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 40 RLQKPTYYGQLHQSLTIIMDTLNGNGFKTSMDIDFAS 150 R P Y G H S T+I+D L KT I + S Sbjct: 135 RANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTS 171
>DEOB_ECO57 (P0A6K8) Phosphopentomutase (EC 5.4.2.7) (Phosphodeoxyribomutase)| Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 40 RLQKPTYYGQLHQSLTIIMDTLNGNGFKTSMDIDFAS 150 R P Y G H S T+I+D L KT I + S Sbjct: 135 RANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTS 171
>UVH3_ARATH (Q9ATY5) DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive| protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog) (AtUVH3) (AtXPG) (AtRAD2) Length = 1479 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = -2 Query: 396 GSYIALDSADPKQGDNPSPSALLGNWENVPAAETDDPAKQNSDCS---VPKDSSRRE 235 G + + S + ++ SP A +WE VP + +K ++ S +PKD S E Sbjct: 547 GGPVTISSTENDPKEDTSPWASDSDWEEVPVEQNTSVSKLEANLSNQHIPKDISIAE 603
>JPH2_RABIT (Q9GKY7) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 694 Score = 28.1 bits (61), Expect = 9.4 Identities = 19/53 (35%), Positives = 23/53 (43%) Frame = -2 Query: 378 DSADPKQGDNPSPSALLGNWENVPAAETDDPAKQNSDCSVPKDSSRREAADGL 220 DSA P + LGN E P + PAK VPK +R+ A GL Sbjct: 595 DSAPASPATAPGQAPALGNPEPAP----ESPAKLEPKPIVPKAKARKTEARGL 643
>SYL_ANASP (Q8YS09) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 872 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 357 GDNPSPSALLGNWENVPAAETDDPAKQNSD 268 G SP A L +W NVP PAK+ +D Sbjct: 482 GRGGSPLAQLESWVNVPCPTCGTPAKRETD 511
>KS6C1_MOUSE (Q8BLK9) Ribosomal protein S6 kinase delta-1 (EC 2.7.11.1) (52 kDa| ribosomal protein S6 kinase) Length = 1056 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -2 Query: 354 DNPSPSALLGNWENVPAAETDDPAKQNSDCSVPKDSSRREAADGL 220 D SPS L E+ +E D + SD SVP S + AA+ + Sbjct: 631 DGDSPSQSLDPGESKRESEAQDSVSRGSDDSVPVISFKEAAAEAI 675 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,435,171 Number of Sequences: 219361 Number of extensions: 1185892 Number of successful extensions: 3177 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3176 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
