ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03d11 |
|---|---|
| Clone Library Name | barley_pub |
>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus| (Acinus) Length = 1338 Score = 33.1 bits (74), Expect = 0.40 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 128 FRLYQLKYVLHSSSVHCTEIFWVDAICSQCFIYVATGEK 12 F L QLK +L + E FW+D I S CF+ +T E+ Sbjct: 1022 FTLGQLKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEE 1060
>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus| (Acinus) Length = 1341 Score = 33.1 bits (74), Expect = 0.40 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 128 FRLYQLKYVLHSSSVHCTEIFWVDAICSQCFIYVATGEK 12 F L QLK +L + E FW+D I S CF+ +T E+ Sbjct: 1023 FTLGQLKELLGRTGTLVEEAFWIDKIKSHCFVTYSTVEE 1061
>VHS3_YEAST (Q08438) Protein VHS3 (Viable in a HAL3 SIT4 background protein 3)| Length = 674 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Frame = +1 Query: 232 ASEFELPMAIDVTISFGQPL--LLQSKVPFAGLVDSSIGIDQVSIIPKHEHLPESPEDHP 405 AS F P +I G + LL K+ F G DS + D S P+ EH P + P Sbjct: 153 ASSFSTPTSILSNADMGNNISSLLAKKLSFTGGTDSILNSDNSSDSPRKEH-PHFYVEDP 211 Query: 406 LH 411 LH Sbjct: 212 LH 213
>LRRK1_MOUSE (Q3UHC2) Leucine-rich repeat serine/threonine-protein kinase 1 (EC| 2.7.11.1) Length = 2014 Score = 29.6 bits (65), Expect = 4.4 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -2 Query: 323 RPAKGTLL*SRSG*PKLMVTSIAMGSSNSEATMDHTRWKLRRPQG 189 R K TLL +++ T A ++SEAT+ T+W+L+RP G Sbjct: 648 RQGKSTLL-------EILQTGKAPQLAHSEATIRTTKWELQRPAG 685
>TB182_HUMAN (Q9C0C2) 182 kDa tankyrase 1-binding protein| Length = 1729 Score = 29.6 bits (65), Expect = 4.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 141 PPAQGSPCQQQMTGSPSLRASQLPPC 218 PP + SPC Q+ + S ASQ PC Sbjct: 306 PPDKSSPCHSQLLEAQSPEASQASPC 331
>YIFC_SCHPO (Q9P7S1) Hypothetical protein C23G3.12c in chromosome I| Length = 996 Score = 29.3 bits (64), Expect = 5.7 Identities = 15/60 (25%), Positives = 33/60 (55%) Frame = -1 Query: 327 NEAGKRYLALKQEWLTKTDGDIDRHGEFKFRGYHGSYTVEVATPSGKVTRSFVVDKENPV 148 N+A ++ L++ W+++ D ++ +GE + ++ +Y A SG + S VV++ V Sbjct: 169 NDAAEK-LSILAGWISRIDRNVPDYGELTYCDFNTNYIQAAANASGGSSGSPVVERNGNV 227
>GP111_HUMAN (Q8IZF7) Probable G-protein coupled receptor 111 (G-protein coupled| receptor PGR20) Length = 708 Score = 29.3 bits (64), Expect = 5.7 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -3 Query: 373 HVSELCSPGRCRWNCQRGRQKVPCSEAGVAD 281 H S C+ +C W + ++KVP GV D Sbjct: 80 HCSAGCTHRKCGWAASKSKEKVPARPHGVCD 110
>WC1_NEUCR (Q01371) White collar 1 protein (WC1)| Length = 1167 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = -2 Query: 482 RRRTNTSGRMISRCASVSASPTLPWRGWSSGDSGRCSCFGI 360 R+R G M+ CA+ T WR SG+ C+ G+ Sbjct: 921 RKRRKGGGNMVRDCANCHTRNTPEWRRGPSGNRDLCNSCGL 961
>Y908_METJA (Q58318) Hypothetical protein MJ0908| Length = 1232 Score = 28.9 bits (63), Expect = 7.5 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = -1 Query: 330 VNEAGKRYLALKQEWLTKTDGDIDRHGEFKFRGYHGSYTVEVATPSGKVTRSFVVDKENP 151 +N K L +K E + DI +F YHG V SGK S+V D NP Sbjct: 1049 INRLSKIELTVKNE--DSQEWDIFEGDDFN--SYHGGLIASVTYYSGKKPVSYVGDTSNP 1104 Query: 150 VQVVTLNI 127 + T ++ Sbjct: 1105 NDIRTKHL 1112
>FOXD4_HUMAN (Q12950) Forkhead box protein D4 (Forkhead-related protein FKHL9)| (Forkhead-related transcription factor 5) (FREAC-5) (Myeloid factor-alpha) Length = 439 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%) Frame = +3 Query: 276 FWSATPASEQ----GTFCRPR*QFHRHRP 350 +WS PAS+ G+F R R +F RH+P Sbjct: 177 YWSLDPASQDMFDNGSFLRRRKRFQRHQP 205
>PFA4_NEUCR (Q7SCY6) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 486 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = -1 Query: 426 FAHPAVEGVVLW-GFWEMFMFRNYAHLVDADGTVNEAGKRYLALKQEWLTKTDGDIDRHG 250 FA PAV G++++ G++ ++F A L T E+ + L WLT G Sbjct: 16 FAIPAVCGLIIFLGYYSQYLFNTSADLAPGPLTCRESLIFNILLVCLWLTYYQACTVDPG 75 Query: 249 EFKF 238 ++KF Sbjct: 76 QYKF 79
>GP135_HUMAN (Q8IZ08) Probable G-protein coupled receptor 135| Length = 494 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 437 SVSASPTLPWRGWSSGDSGRCSCFGIMLTWSMPM 336 S A+ PWRG+ + SCFGI+ T S+ + Sbjct: 171 SAPAAAAGPWRGFCAASRFFSSCFGIVSTLSVAL 204
>PROB_CORJK (Q4JWT5) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 377 Score = 28.5 bits (62), Expect = 9.7 Identities = 22/88 (25%), Positives = 36/88 (40%) Frame = -1 Query: 483 SAENEHIRADDLEVCLRECFAHPAVEGVVLWGFWEMFMFRNYAHLVDADGTVNEAGKRYL 304 S EN D EV CF P + + W FW ++ ++ L G V+ + + Sbjct: 243 STENIGAALDTAEV--GTCF-WPDQDRLSAWKFWVLYAADSHGQLHLDAGAVHAVTENHK 299 Query: 303 ALKQEWLTKTDGDIDRHGEFKFRGYHGS 220 +L +TK +GD + G G+ Sbjct: 300 SLLSVGITKVEGDFSQRDVVDLVGPDGN 327 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,491,347 Number of Sequences: 219361 Number of extensions: 1690692 Number of successful extensions: 4602 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4454 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4598 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
