ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477949.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3793 Score = 206 bits (104), Expect = 5e-50 Identities = 299/364 (82%) Strand = Plus / Minus Query: 119 acaacctaaatgttcaaggtaaccacctgcacagggttctccttgtcaacaacaaatgac 178 |||| ||||||||||| |||||||||||| |||| ||| ||||||||||||||||| || Sbjct: 3637 acaagctaaatgttcagggtaaccacctgaacagcgttatccttgtcaacaacaaacgat 3578 Query: 179 cgggtcaccttccctgagggcgtcgcaacttccaccgtgtatgatccatggtagcctctg 238 | ||| ||||| ||||| ||||| || ||||| ||||||||||| ||||||||||||||| Sbjct: 3577 ctggttacctttcctgaaggcgttgctacttctaccgtgtatgacccatggtagcctctg 3518 Query: 239 aatttgaactccccatggcgatcgatgtcaccatcagttttggtcagccactcctgcttc 298 || || ||||| |||||| |||| | || ||| | | |||| |||||||| |||||| Sbjct: 3517 aacttcaactctccatggtgatccacgttgccagtaatgctggttagccactcttgcttc 3458 Query: 299 agagcaaggtaccttttgccggcctcgttgacagttccatcggcatcgaccaggtgagca 358 || |||| |||||||||||| ||||| |||| |||||||| |||| ||||||||||| Sbjct: 3457 agtgcaatgtaccttttgccagcctcattgatcgttccatcaacatcaaccaggtgagcg 3398 Query: 359 taattccgaaacatgaacatctcccagaatccccagaggaccaccccctccacggcaggg 418 | | || |||||||||| ||||||||||||||| |||| | ||||||||||| ||| Sbjct: 3397 tgttctcggaacatgaacagctcccagaatccccaaaggataatcccctccacggaagga 3338 Query: 419 tgggcgaagcactcacggaggcacacctcgagatcatccgcccggatgtgttcgttctcc 478 || || ||| || || ||| ||||||| |||||||| || ||||||||||| ||||| Sbjct: 3337 tgcgcaaaggcttcgcgaaggtacacctccagatcatcggctcggatgtgttcattctca 3278 Query: 479 gccg 482 |||| Sbjct: 3277 gccg 3274
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 206 bits (104), Expect = 5e-50 Identities = 299/364 (82%) Strand = Plus / Minus Query: 119 acaacctaaatgttcaaggtaaccacctgcacagggttctccttgtcaacaacaaatgac 178 |||| ||||||||||| |||||||||||| |||| ||| ||||||||||||||||| || Sbjct: 15836296 acaagctaaatgttcagggtaaccacctgaacagcgttatccttgtcaacaacaaacgat 15836237 Query: 179 cgggtcaccttccctgagggcgtcgcaacttccaccgtgtatgatccatggtagcctctg 238 | ||| ||||| ||||| ||||| || ||||| ||||||||||| ||||||||||||||| Sbjct: 15836236 ctggttacctttcctgaaggcgttgctacttctaccgtgtatgacccatggtagcctctg 15836177 Query: 239 aatttgaactccccatggcgatcgatgtcaccatcagttttggtcagccactcctgcttc 298 || || ||||| |||||| |||| | || ||| | | |||| |||||||| |||||| Sbjct: 15836176 aacttcaactctccatggtgatccacgttgccagtaatgctggttagccactcttgcttc 15836117 Query: 299 agagcaaggtaccttttgccggcctcgttgacagttccatcggcatcgaccaggtgagca 358 || |||| |||||||||||| ||||| |||| |||||||| |||| ||||||||||| Sbjct: 15836116 agtgcaatgtaccttttgccagcctcattgatcgttccatcaacatcaaccaggtgagcg 15836057 Query: 359 taattccgaaacatgaacatctcccagaatccccagaggaccaccccctccacggcaggg 418 | | || |||||||||| ||||||||||||||| |||| | ||||||||||| ||| Sbjct: 15836056 tgttctcggaacatgaacagctcccagaatccccaaaggataatcccctccacggaagga 15835997 Query: 419 tgggcgaagcactcacggaggcacacctcgagatcatccgcccggatgtgttcgttctcc 478 || || ||| || || ||| ||||||| |||||||| || ||||||||||| ||||| Sbjct: 15835996 tgcgcaaaggcttcgcgaaggtacacctccagatcatcggctcggatgtgttcattctca 15835937 Query: 479 gccg 482 |||| Sbjct: 15835936 gccg 15835933
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 206 bits (104), Expect = 5e-50 Identities = 299/364 (82%) Strand = Plus / Minus Query: 119 acaacctaaatgttcaaggtaaccacctgcacagggttctccttgtcaacaacaaatgac 178 |||| ||||||||||| |||||||||||| |||| ||| ||||||||||||||||| || Sbjct: 75810 acaagctaaatgttcagggtaaccacctgaacagcgttatccttgtcaacaacaaacgat 75751 Query: 179 cgggtcaccttccctgagggcgtcgcaacttccaccgtgtatgatccatggtagcctctg 238 | ||| ||||| ||||| ||||| || ||||| ||||||||||| ||||||||||||||| Sbjct: 75750 ctggttacctttcctgaaggcgttgctacttctaccgtgtatgacccatggtagcctctg 75691 Query: 239 aatttgaactccccatggcgatcgatgtcaccatcagttttggtcagccactcctgcttc 298 || || ||||| |||||| |||| | || ||| | | |||| |||||||| |||||| Sbjct: 75690 aacttcaactctccatggtgatccacgttgccagtaatgctggttagccactcttgcttc 75631 Query: 299 agagcaaggtaccttttgccggcctcgttgacagttccatcggcatcgaccaggtgagca 358 || |||| |||||||||||| ||||| |||| |||||||| |||| ||||||||||| Sbjct: 75630 agtgcaatgtaccttttgccagcctcattgatcgttccatcaacatcaaccaggtgagcg 75571 Query: 359 taattccgaaacatgaacatctcccagaatccccagaggaccaccccctccacggcaggg 418 | | || |||||||||| ||||||||||||||| |||| | ||||||||||| ||| Sbjct: 75570 tgttctcggaacatgaacagctcccagaatccccaaaggataatcccctccacggaagga 75511 Query: 419 tgggcgaagcactcacggaggcacacctcgagatcatccgcccggatgtgttcgttctcc 478 || || ||| || || ||| ||||||| |||||||| || ||||||||||| ||||| Sbjct: 75510 tgcgcaaaggcttcgcgaaggtacacctccagatcatcggctcggatgtgttcattctca 75451 Query: 479 gccg 482 |||| Sbjct: 75450 gccg 75447
>dbj|AK100891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130H08, full insert sequence Length = 3792 Score = 206 bits (104), Expect = 5e-50 Identities = 299/364 (82%) Strand = Plus / Minus Query: 119 acaacctaaatgttcaaggtaaccacctgcacagggttctccttgtcaacaacaaatgac 178 |||| ||||||||||| |||||||||||| |||| ||| ||||||||||||||||| || Sbjct: 3636 acaagctaaatgttcagggtaaccacctgaacagcgttatccttgtcaacaacaaacgat 3577 Query: 179 cgggtcaccttccctgagggcgtcgcaacttccaccgtgtatgatccatggtagcctctg 238 | ||| ||||| ||||| ||||| || ||||| ||||||||||| ||||||||||||||| Sbjct: 3576 ctggttacctttcctgaaggcgttgctacttctaccgtgtatgacccatggtagcctctg 3517 Query: 239 aatttgaactccccatggcgatcgatgtcaccatcagttttggtcagccactcctgcttc 298 || || ||||| |||||| |||| | || ||| | | |||| |||||||| |||||| Sbjct: 3516 aacttcaactctccatggtgatccacgttgccagtaatgctggttagccactcttgcttc 3457 Query: 299 agagcaaggtaccttttgccggcctcgttgacagttccatcggcatcgaccaggtgagca 358 || |||| |||||||||||| ||||| |||| |||||||| |||| ||||||||||| Sbjct: 3456 agtgcaatgtaccttttgccagcctcattgatcgttccatcaacatcaaccaggtgagcg 3397 Query: 359 taattccgaaacatgaacatctcccagaatccccagaggaccaccccctccacggcaggg 418 | | || |||||||||| ||||||||||||||| |||| | ||||||||||| ||| Sbjct: 3396 tgttctcggaacatgaacagctcccagaatccccaaaggataatcccctccacggaagga 3337 Query: 419 tgggcgaagcactcacggaggcacacctcgagatcatccgcccggatgtgttcgttctcc 478 || || ||| || || ||| ||||||| |||||||| || ||||||||||| ||||| Sbjct: 3336 tgcgcaaaggcttcgcgaaggtacacctccagatcatcggctcggatgtgttcattctca 3277 Query: 479 gccg 482 |||| Sbjct: 3276 gccg 3273
>gb|AY110871.1| Zea mays CL50920_1 mRNA sequence Length = 651 Score = 93.7 bits (47), Expect = 5e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 280 ggtcagccactcctgcttcagagcaaggtaccttttgccggcctcgttgacagttccatc 339 |||||||||||| || || |||||||||||||| |||| |||||||||| || ||||| Sbjct: 282 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 341 Query: 340 ggcatcgaccaggtgagcataattccgaaacatgaacatctcccagaatccccagagga 398 ||||||||||| || || | | |||||||| ||||||||||||||||||||||||| Sbjct: 342 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagagga 400
>ref|NM_001036516.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT4G08160 transcript variant AT4G08160.2 mRNA, complete cds Length = 2527 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 224 ccatggtagcctctgaatttgaactc 249 |||||||||||||||||| ||||||| Sbjct: 2241 ccatggtagcctctgaatgtgaactc 2216
>ref|NM_116885.3| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT4G08160 transcript variant AT4G08160.1 mRNA, complete cds Length = 2516 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 224 ccatggtagcctctgaatttgaactc 249 |||||||||||||||||| ||||||| Sbjct: 2230 ccatggtagcctctgaatgtgaactc 2205
>gb|AC006267.1| Arabidopsis thaliana BAC F9M13 from chromosome IV near 21.5 cM, complete sequence Length = 101644 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 224 ccatggtagcctctgaatttgaactc 249 |||||||||||||||||| ||||||| Sbjct: 2784 ccatggtagcctctgaatgtgaactc 2759
>ref|XM_848548.1| PREDICTED: Canis familiaris similar to peptide deformylase-like protein (LOC610955), mRNA Length = 729 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 178 ccgggtcaccttccctgagggc 199 |||||||||||||||||||||| Sbjct: 489 ccgggtcaccttccctgagggc 510
>gb|DQ152919.1| Nicotiana tabacum putative xylanase Xyn1 mRNA, complete cds Length = 2757 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 286 ccactcctgcttcagagcaaggtacctttt 315 |||||| ||||| ||||||||||||||||| Sbjct: 2595 ccactcgtgcttaagagcaaggtacctttt 2566
>emb|AL161510.2|ATCHRIV22 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 22 Length = 198131 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 224 ccatggtagcctctgaatttgaactc 249 |||||||||||||||||| ||||||| Sbjct: 126255 ccatggtagcctctgaatgtgaactc 126280
>gb|BT005962.1| Arabidopsis thaliana At4g08160 gene, complete cds Length = 2259 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 224 ccatggtagcctctgaatttgaactc 249 |||||||||||||||||| ||||||| Sbjct: 2150 ccatggtagcctctgaatgtgaactc 2125
>dbj|AK117349.1| Arabidopsis thaliana At4g08160 mRNA for putative xylan endohydrolase, complete cds, clone: RAFL16-91-G20 Length = 2516 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 224 ccatggtagcctctgaatttgaactc 249 |||||||||||||||||| ||||||| Sbjct: 2230 ccatggtagcctctgaatgtgaactc 2205
>ref|XM_514913.1| PREDICTED: Pan troglodytes similar to PR-domain zinc finger protein 15 (Zinc finger protein 298) (LOC458572), mRNA Length = 1584 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 tccatcggcatcgaccaggtgagca 358 ||||||||||||| ||||||||||| Sbjct: 73 tccatcggcatcgtccaggtgagca 97
>ref|XM_874561.1| PREDICTED: Bos taurus similar to additional sex combs like 1, transcript variant 3 (LOC538107), mRNA Length = 6950 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 tcagccactcctgcttcagag 302 ||||||||||||||||||||| Sbjct: 5797 tcagccactcctgcttcagag 5777
>ref|XM_618301.2| PREDICTED: Bos taurus similar to additional sex combs like 1, transcript variant 1 (LOC538107), mRNA Length = 6773 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 tcagccactcctgcttcagag 302 ||||||||||||||||||||| Sbjct: 5620 tcagccactcctgcttcagag 5600
>emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chromosome 11 no genes, complete sequence Length = 216199 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 44 gtgaacatatggcatcaacccaaaa 68 |||||||| |||||||||||||||| Sbjct: 194087 gtgaacatttggcatcaacccaaaa 194111
>gb|AC114289.2| Homo sapiens chromosome 5 clone CTD-2541N22, complete sequence Length = 187032 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 tcagtacaatgcacactgctc 93 ||||||||||||||||||||| Sbjct: 23823 tcagtacaatgcacactgctc 23803
>gb|AC108118.2| Homo sapiens chromosome 5 clone RP11-44C2, complete sequence Length = 86421 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 tcagtacaatgcacactgctc 93 ||||||||||||||||||||| Sbjct: 11281 tcagtacaatgcacactgctc 11301
>ref|XM_808221.1| Trypanosoma cruzi strain CL Brener protein kinase (Tc00.1047053509053.100) partial mRNA Length = 1530 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gaagggacttcttttctccc 21 |||||||||||||||||||| Sbjct: 595 gaagggacttcttttctccc 614
>gb|DQ152920.1| Nicotiana tabacum putative xylanase Xyn2 mRNA, complete cds Length = 2757 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 catgaacatctcccagaatcccca 393 |||||||| ||||||||||||||| Sbjct: 2511 catgaacagctcccagaatcccca 2488
>emb|AL590624.8| Human DNA sequence from clone RP11-380B22 on chromosome 1 Contains a novel gene, complete sequence Length = 157779 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 aacatatggcatcaacccaa 66 |||||||||||||||||||| Sbjct: 9086 aacatatggcatcaacccaa 9105
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 catcggcatcgaccaggtga 355 |||||||||||||||||||| Sbjct: 815857 catcggcatcgaccaggtga 815838
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cactcctgcttcagagcaag 306 |||||||||||||||||||| Sbjct: 1077556 cactcctgcttcagagcaag 1077537
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tcaccatcagttttggtcag 285 |||||||||||||||||||| Sbjct: 827165 tcaccatcagttttggtcag 827146
>gb|AC155721.7| Mus musculus 6 BAC RP24-186O21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 180652 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aaaaaatctcagtacaatgc 84 |||||||||||||||||||| Sbjct: 5598 aaaaaatctcagtacaatgc 5617
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1274878 atcgatgtcaccatcagttt 1274859
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1322581 atcgatgtcaccatcagttt 1322562
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1711250 atcgatgtcaccatcagttt 1711269
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence Length = 108484 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 atgtcaccatcagttttggt 282 |||||||||||||||||||| Sbjct: 57531 atgtcaccatcagttttggt 57512
>gb|AC149092.6| Pan troglodytes BAC clone CH251-553I6 from chromosome 7, complete sequence Length = 194702 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 tgaacatctcccagaatccccaga 395 |||||||||| ||||||||||||| Sbjct: 159714 tgaacatctcacagaatccccaga 159737
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1285648 atcgatgtcaccatcagttt 1285629
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1570551 atcgatgtcaccatcagttt 1570570
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1181874 atcgatgtcaccatcagttt 1181855
>gb|AC073057.6| Homo sapiens BAC clone RP11-114G11 from 7, complete sequence Length = 178105 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 tgaacatctcccagaatccccaga 395 |||||||||| ||||||||||||| Sbjct: 85339 tgaacatctcacagaatccccaga 85316
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1261819 atcgatgtcaccatcagttt 1261800
>emb|BX828318.1|CNS0A4BA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH76ZB12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2440 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 ccatggtagcctctgaatttgaac 247 |||||||||||||||||| ||||| Sbjct: 2238 ccatggtagcctctgaatgtgaac 2215
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1246383 atcgatgtcaccatcagttt 1246364
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1246252 atcgatgtcaccatcagttt 1246233
>gb|AC122733.11| Mus musculus chromosome 5, clone RP24-506B15, complete sequence Length = 157625 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ataaagcactgtgaacatat 53 |||||||||||||||||||| Sbjct: 29410 ataaagcactgtgaacatat 29429
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 828522 atcgatgtcaccatcagttt 828503
>gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, complete sequence Length = 220813 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 ataaagcactgtgaacatat 53 |||||||||||||||||||| Sbjct: 87790 ataaagcactgtgaacatat 87771
>gb|AC148935.6| Pan troglodytes BAC clone CH251-485J2 from chromosome 7, complete sequence Length = 215177 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 tgaacatctcccagaatccccaga 395 |||||||||| ||||||||||||| Sbjct: 171583 tgaacatctcacagaatccccaga 171606
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1288085 atcgatgtcaccatcagttt 1288066
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 934930 atcgatgtcaccatcagttt 934911
>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208921 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tctcccagaatccccagagg 397 |||||||||||||||||||| Sbjct: 118010 tctcccagaatccccagagg 117991
>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence Length = 207908 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tctcccagaatccccagagg 397 |||||||||||||||||||| Sbjct: 198220 tctcccagaatccccagagg 198201
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 atcgatgtcaccatcagttt 278 |||||||||||||||||||| Sbjct: 1211270 atcgatgtcaccatcagttt 1211251
>gb|AC153908.2| Mus musculus 6 BAC RP23-190K19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201588 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aaaaaatctcagtacaatgc 84 |||||||||||||||||||| Sbjct: 61562 aaaaaatctcagtacaatgc 61581
>emb|AL606929.13| Mouse DNA sequence from clone RP23-139J21 on chromosome 4, complete sequence Length = 198728 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 atggtagcctctgaatttga 245 |||||||||||||||||||| Sbjct: 193293 atggtagcctctgaatttga 193274
>emb|AL671880.15| Mouse DNA sequence from clone RP23-384C22 on chromosome X, complete sequence Length = 200535 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ataaagcactgtgaacatat 53 |||||||||||||||||||| Sbjct: 36085 ataaagcactgtgaacatat 36104
>emb|AL034384.1|HSMTM0 Human chromosome Xq28, cosmid clones 7H3, 14D7, C1230, 11E7, F1096, A12197, 12G8, A09100; complete sequence bases 1..217657 Length = 217657 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 cagccactcctgcttcagag 302 |||||||||||||||||||| Sbjct: 89449 cagccactcctgcttcagag 89430 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,797,100 Number of Sequences: 3902068 Number of extensions: 3797100 Number of successful extensions: 86262 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85971 Number of HSP's gapped (non-prelim): 282 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
